Wall clock time and date at job start Mon Mar 8 2021 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 108.58051 * 2 1 4 4 O 1.42103 * 108.58112 * 228.97306 * 2 1 3 5 5 C 1.81402 * 101.92060 * 114.48554 * 2 1 3 6 6 H 1.08998 * 112.85093 * 311.19254 * 5 2 1 7 7 C 1.53777 * 113.61305 * 82.50536 * 5 2 1 8 8 C 1.53785 * 87.08241 * 139.97895 * 7 5 2 9 9 H 1.09002 * 113.61570 * 220.01842 * 8 7 5 10 10 N 1.46500 * 113.68813 * 89.12417 * 8 7 5 11 11 C 1.39006 * 119.99974 * 105.94129 * 10 8 7 12 12 N 1.32394 * 119.70660 * 179.97438 * 11 10 8 13 13 C 1.31969 * 121.62369 * 179.97438 * 12 11 10 14 14 C 1.38024 * 120.85526 * 359.97366 * 13 12 11 15 15 C 1.50697 * 120.33464 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47084 * 245.00201 * 15 14 13 17 17 Si 1.86305 * 109.47339 * 4.99591 * 15 14 13 18 18 C 1.38877 * 119.33279 * 0.02562 * 14 13 12 19 19 C 1.38308 * 118.50206 * 359.72823 * 18 14 13 20 20 C 1.53781 * 87.08241 * 334.56547 * 8 7 5 21 21 H 1.09002 * 109.47059 * 305.51216 * 1 2 3 22 22 H 1.08997 * 109.47239 * 65.51721 * 1 2 3 23 23 H 1.09003 * 109.46809 * 185.51224 * 1 2 3 24 24 H 1.08999 * 113.61947 * 25.43320 * 7 5 2 25 25 H 1.08997 * 113.61348 * 254.52535 * 7 5 2 26 26 H 0.96998 * 120.00149 * 285.93056 * 10 8 7 27 27 H 1.08005 * 119.57299 * 179.97438 * 13 12 11 28 28 H 1.08995 * 109.47375 * 124.99962 * 15 14 13 29 29 H 0.96700 * 114.00286 * 59.99789 * 16 15 14 30 30 H 1.48506 * 109.99585 * 58.68252 * 17 15 14 31 31 H 1.48497 * 110.00082 * 180.02562 * 17 15 14 32 32 H 1.07999 * 120.75494 * 179.97438 * 18 14 13 33 33 H 1.07996 * 120.45013 * 180.28623 * 19 18 14 34 34 H 1.09000 * 113.61578 * 139.97748 * 20 8 7 35 35 H 1.08997 * 113.61673 * 270.88717 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.6289 -0.2761 2.4298 7 6 2.1361 -2.2725 1.6193 8 6 3.3796 -2.2344 2.5233 9 1 4.1159 -3.0023 2.2858 10 7 3.0662 -2.1694 3.9529 11 6 3.2382 -3.2924 4.7538 12 7 2.9537 -3.2271 6.0452 13 6 3.1023 -4.2700 6.8401 14 6 3.5628 -5.4748 6.3487 15 6 3.7276 -6.6583 7.2669 16 8 5.1114 -7.0039 7.3549 17 14 3.0873 -6.2235 8.9616 18 6 3.8727 -5.5853 4.9994 19 6 3.7019 -4.4769 4.1900 20 6 3.6947 -0.8648 1.8989 21 1 -0.3633 0.5970 0.8365 22 1 -0.3633 0.4259 -0.9352 23 1 -0.3633 -1.0230 0.0987 24 1 2.3204 -2.7183 0.6419 25 1 1.2515 -2.6778 2.1105 26 1 2.7389 -1.3427 4.3406 27 1 2.8605 -4.1796 7.8889 28 1 3.1660 -7.5051 6.8725 29 1 5.6726 -6.2955 7.6989 30 1 1.6573 -5.8315 8.8790 31 1 3.2447 -7.3823 9.8767 32 1 4.2351 -6.5169 4.5906 33 1 3.9288 -4.5291 3.1355 34 1 4.0683 -0.1336 2.6158 35 1 4.3050 -0.9257 0.9979 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12912158_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:43 Heat of formation + Delta-G solvation = -16.336491 kcal Electronic energy + Delta-G solvation = -20124.736349 eV Core-core repulsion = 16832.417278 eV Total energy + Delta-G solvation = -3292.319072 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65926 -40.39649 -38.06863 -37.89049 -37.09212 -35.35018 -33.44870 -31.30110 -30.71783 -27.41594 -27.20850 -25.94363 -24.78936 -22.86706 -21.03936 -19.98651 -19.20529 -18.50424 -18.02242 -17.55756 -17.30096 -17.04002 -16.57080 -16.41611 -16.06728 -15.71697 -15.42765 -15.03001 -14.51157 -14.34025 -14.28843 -14.16029 -14.12384 -13.98729 -13.85600 -13.42838 -13.16141 -13.05042 -12.50770 -12.37868 -12.18644 -12.06851 -12.02703 -11.41035 -11.16300 -10.80513 -10.46596 -10.43360 -8.84938 -5.06661 -1.12616 0.15781 0.34384 1.27182 1.57326 1.60398 1.84015 1.95654 2.37660 2.62618 2.74938 2.94028 3.17014 3.28925 3.44159 3.50243 3.53779 3.70822 3.71857 3.84729 3.89960 3.97786 4.11607 4.22977 4.25153 4.35645 4.44595 4.49195 4.54164 4.57513 4.65234 4.69959 4.93950 5.24017 5.42232 5.86749 6.38380 6.55734 7.05244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.426 3.574 3 O -0.937 6.937 4 O -0.934 6.934 5 C -0.609 4.609 6 H 0.151 0.849 7 C -0.133 4.133 8 C 0.142 3.858 9 H 0.109 0.891 10 N -0.706 5.706 11 C 0.408 3.592 12 N -0.538 5.538 13 C 0.157 3.843 14 C -0.233 4.233 15 C -0.053 4.053 16 O -0.542 6.542 17 Si 0.680 3.320 18 C -0.005 4.005 19 C -0.237 4.237 20 C -0.113 4.113 21 H 0.128 0.872 22 H 0.130 0.870 23 H 0.129 0.871 24 H 0.117 0.883 25 H 0.091 0.909 26 H 0.407 0.593 27 H 0.156 0.844 28 H 0.112 0.888 29 H 0.379 0.621 30 H -0.256 1.256 31 H -0.253 1.253 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 0.037 1.484 1.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.608 3.392 3 O -0.934 6.934 4 O -0.931 6.931 5 C -0.717 4.717 6 H 0.169 0.831 7 C -0.173 4.173 8 C 0.034 3.966 9 H 0.127 0.873 10 N -0.338 5.338 11 C 0.173 3.827 12 N -0.255 5.255 13 C 0.000 4.000 14 C -0.238 4.238 15 C -0.165 4.165 16 O -0.347 6.347 17 Si 0.582 3.418 18 C -0.031 4.031 19 C -0.262 4.262 20 C -0.152 4.152 21 H 0.147 0.853 22 H 0.148 0.852 23 H 0.147 0.853 24 H 0.135 0.865 25 H 0.110 0.890 26 H 0.244 0.756 27 H 0.172 0.828 28 H 0.130 0.870 29 H 0.226 0.774 30 H -0.181 1.181 31 H -0.178 1.178 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.115 0.885 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.395 0.354 1.374 1.990 hybrid contribution -0.771 -0.764 -0.161 1.097 sum -2.166 -0.410 1.213 2.516 Atomic orbital electron populations 1.30235 1.26608 1.11654 1.11914 1.07744 0.78463 0.75604 0.77384 1.93619 1.79094 1.34283 1.86412 1.93614 1.79198 1.67154 1.53150 1.31771 1.07321 1.08927 1.23716 0.83069 1.23367 1.01208 0.89924 1.02780 1.21679 0.96814 0.98367 0.79711 0.87311 1.44084 1.71865 1.11776 1.06037 1.18330 0.89840 0.86711 0.87825 1.67109 1.22690 1.32226 1.03439 1.22194 0.92542 0.87072 0.98231 1.21022 1.08969 0.97387 0.96386 1.24791 0.87406 0.97175 1.07089 1.86499 1.16824 1.43064 1.88335 0.94906 0.82961 0.86362 0.77565 1.21222 0.91690 0.98050 0.92125 1.21527 1.09746 0.93190 1.01725 1.23006 0.90883 0.98275 1.03039 0.85349 0.85159 0.85258 0.86505 0.89017 0.75621 0.82751 0.87047 0.77403 1.18091 1.17754 0.84548 0.84616 0.88456 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.88 10.62 101.05 1.07 3.95 16 2 S 2.43 -4.92 5.34 -107.50 -0.57 -5.50 16 3 O -0.94 -2.21 18.10 -57.83 -1.05 -3.26 16 4 O -0.93 -1.32 17.19 -57.83 -0.99 -2.31 16 5 C -0.61 2.60 4.06 -25.91 -0.11 2.50 16 6 H 0.15 -0.94 8.14 -51.93 -0.42 -1.36 16 7 C -0.13 0.55 7.42 -25.92 -0.19 0.35 16 8 C 0.14 -0.48 4.06 -67.12 -0.27 -0.75 16 9 H 0.11 -0.44 6.18 -51.93 -0.32 -0.76 16 10 N -0.71 1.29 5.44 -53.14 -0.29 1.00 16 11 C 0.41 0.16 7.65 -155.02 -1.19 -1.03 16 12 N -0.54 -0.87 10.39 -12.44 -0.13 -1.00 16 13 C 0.16 0.04 9.84 -17.57 -0.17 -0.13 16 14 C -0.23 0.04 5.36 -104.46 -0.56 -0.52 16 15 C -0.05 0.04 2.82 36.00 0.10 0.14 16 16 O -0.54 0.12 12.84 -35.23 -0.45 -0.33 16 17 Si 0.68 -0.96 29.83 -169.99 -5.07 -6.03 16 18 C -0.01 0.00 9.84 -39.32 -0.39 -0.39 16 19 C -0.24 0.11 9.28 -39.22 -0.36 -0.25 16 20 C -0.11 0.41 7.41 -25.91 -0.19 0.21 16 21 H 0.13 -0.75 8.14 -51.92 -0.42 -1.17 16 22 H 0.13 -0.55 8.14 -51.93 -0.42 -0.97 16 23 H 0.13 -0.76 8.14 -51.92 -0.42 -1.18 16 24 H 0.12 -0.51 7.36 -51.93 -0.38 -0.89 16 25 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 26 H 0.41 -0.96 8.83 -40.82 -0.36 -1.32 16 27 H 0.16 -0.28 4.91 -52.48 -0.26 -0.54 16 28 H 0.11 -0.04 7.96 -51.93 -0.41 -0.46 16 29 H 0.38 -1.48 8.70 45.56 0.40 -1.09 16 30 H -0.26 -0.26 7.11 56.52 0.40 0.14 16 31 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 32 H 0.14 -0.17 8.06 -52.49 -0.42 -0.59 16 33 H 0.14 -0.33 6.07 -52.49 -0.32 -0.64 16 34 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16 35 H 0.11 -0.44 8.10 -51.93 -0.42 -0.86 16 LS Contribution 306.72 15.07 4.62 4.62 Total: 0.00 -11.68 306.72 -10.43 -22.11 By element: Atomic # 1 Polarization: -9.16 SS G_CDS: -4.23 Total: -13.39 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.26 Total: 4.09 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -0.42 Total: 0.00 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -2.49 Total: -5.90 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -5.07 Total: -6.03 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -0.57 Total: -5.50 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -11.68 -10.43 -22.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.771 kcal (2) G-P(sol) polarization free energy of solvation -11.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds