Wall clock time and date at job start Mon Mar 8 2021 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 108.58051 * 2 1 4 4 O 1.42103 * 108.58112 * 228.97306 * 2 1 3 5 5 C 1.81402 * 101.92060 * 114.48554 * 2 1 3 6 6 H 1.08998 * 112.85093 * 311.19254 * 5 2 1 7 7 C 1.53777 * 113.61305 * 82.50536 * 5 2 1 8 8 C 1.53785 * 87.08241 * 139.97895 * 7 5 2 9 9 H 1.09002 * 113.61570 * 220.01842 * 8 7 5 10 10 N 1.46500 * 113.68813 * 89.12417 * 8 7 5 11 11 C 1.39006 * 119.99974 * 105.94129 * 10 8 7 12 12 N 1.32394 * 119.70660 * 179.97438 * 11 10 8 13 13 C 1.31969 * 121.62369 * 179.97438 * 12 11 10 14 14 C 1.38024 * 120.85526 * 359.97366 * 13 12 11 15 15 C 1.50697 * 120.33464 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47084 * 245.00201 * 15 14 13 17 17 Si 1.86305 * 109.47339 * 4.99591 * 15 14 13 18 18 C 1.38877 * 119.33279 * 0.02562 * 14 13 12 19 19 C 1.38308 * 118.50206 * 359.72823 * 18 14 13 20 20 C 1.53781 * 87.08241 * 334.56547 * 8 7 5 21 21 H 1.09002 * 109.47059 * 305.51216 * 1 2 3 22 22 H 1.08997 * 109.47239 * 65.51721 * 1 2 3 23 23 H 1.09003 * 109.46809 * 185.51224 * 1 2 3 24 24 H 1.08999 * 113.61947 * 25.43320 * 7 5 2 25 25 H 1.08997 * 113.61348 * 254.52535 * 7 5 2 26 26 H 0.96998 * 120.00149 * 285.93056 * 10 8 7 27 27 H 1.08005 * 119.57299 * 179.97438 * 13 12 11 28 28 H 1.08995 * 109.47375 * 124.99962 * 15 14 13 29 29 H 0.96700 * 114.00286 * 59.99789 * 16 15 14 30 30 H 1.48506 * 109.99585 * 58.68252 * 17 15 14 31 31 H 1.48497 * 110.00082 * 180.02562 * 17 15 14 32 32 H 1.07999 * 120.75494 * 179.97438 * 18 14 13 33 33 H 1.07996 * 120.45013 * 180.28623 * 19 18 14 34 34 H 1.09000 * 113.61578 * 139.97748 * 20 8 7 35 35 H 1.08997 * 113.61673 * 270.88717 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.6289 -0.2761 2.4298 7 6 2.1361 -2.2725 1.6193 8 6 3.3796 -2.2344 2.5233 9 1 4.1159 -3.0023 2.2858 10 7 3.0662 -2.1694 3.9529 11 6 3.2382 -3.2924 4.7538 12 7 2.9537 -3.2271 6.0452 13 6 3.1023 -4.2700 6.8401 14 6 3.5628 -5.4748 6.3487 15 6 3.7276 -6.6583 7.2669 16 8 5.1114 -7.0039 7.3549 17 14 3.0873 -6.2235 8.9616 18 6 3.8727 -5.5853 4.9994 19 6 3.7019 -4.4769 4.1900 20 6 3.6947 -0.8648 1.8989 21 1 -0.3633 0.5970 0.8365 22 1 -0.3633 0.4259 -0.9352 23 1 -0.3633 -1.0230 0.0987 24 1 2.3204 -2.7183 0.6419 25 1 1.2515 -2.6778 2.1105 26 1 2.7389 -1.3427 4.3406 27 1 2.8605 -4.1796 7.8889 28 1 3.1660 -7.5051 6.8725 29 1 5.6726 -6.2955 7.6989 30 1 1.6573 -5.8315 8.8790 31 1 3.2447 -7.3823 9.8767 32 1 4.2351 -6.5169 4.5906 33 1 3.9288 -4.5291 3.1355 34 1 4.0683 -0.1336 2.6158 35 1 4.3050 -0.9257 0.9979 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12912158_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:42 Heat of formation + Delta-G solvation = -22.273847 kcal Electronic energy + Delta-G solvation = -20124.993812 eV Core-core repulsion = 16832.417278 eV Total energy + Delta-G solvation = -3292.576535 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54989 -40.18637 -38.03694 -37.82513 -37.06336 -35.21352 -33.39235 -31.19964 -30.40579 -27.23763 -26.90494 -25.81136 -24.71543 -22.77953 -20.83182 -19.81062 -19.06430 -18.43070 -17.86664 -17.42237 -17.13383 -16.90983 -16.50886 -16.24911 -15.99183 -15.59164 -15.30952 -14.85537 -14.31351 -14.20224 -14.04497 -14.02974 -13.92612 -13.75962 -13.61041 -13.35496 -13.16128 -13.04375 -12.40215 -12.20575 -12.10626 -11.94670 -11.82960 -11.22469 -10.97756 -10.74707 -10.42589 -10.37718 -8.73384 -4.98744 -0.93376 0.21719 0.39266 1.34506 1.64421 1.80850 1.98069 2.01115 2.60192 2.81242 2.86609 3.20787 3.41308 3.53504 3.58533 3.63730 3.79183 3.86329 4.01100 4.06910 4.08405 4.21285 4.33693 4.42009 4.54723 4.55441 4.64794 4.74322 4.77052 4.88290 4.94809 4.96316 5.03894 5.32886 5.53034 6.01103 6.52289 6.80434 7.12657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.426 3.574 3 O -0.990 6.990 4 O -0.977 6.977 5 C -0.589 4.589 6 H 0.176 0.824 7 C -0.130 4.130 8 C 0.139 3.861 9 H 0.116 0.884 10 N -0.700 5.700 11 C 0.397 3.603 12 N -0.562 5.562 13 C 0.147 3.853 14 C -0.236 4.236 15 C -0.054 4.054 16 O -0.557 6.557 17 Si 0.764 3.236 18 C -0.014 4.014 19 C -0.241 4.241 20 C -0.122 4.122 21 H 0.149 0.851 22 H 0.129 0.871 23 H 0.150 0.850 24 H 0.119 0.881 25 H 0.100 0.900 26 H 0.409 0.591 27 H 0.169 0.831 28 H 0.107 0.893 29 H 0.394 0.606 30 H -0.287 1.287 31 H -0.298 1.298 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -0.071 1.765 2.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.614 3.386 3 O -0.987 6.987 4 O -0.974 6.974 5 C -0.700 4.700 6 H 0.194 0.806 7 C -0.170 4.170 8 C 0.032 3.968 9 H 0.134 0.866 10 N -0.332 5.332 11 C 0.161 3.839 12 N -0.279 5.279 13 C -0.010 4.010 14 C -0.241 4.241 15 C -0.165 4.165 16 O -0.365 6.365 17 Si 0.671 3.329 18 C -0.039 4.039 19 C -0.265 4.265 20 C -0.161 4.161 21 H 0.167 0.833 22 H 0.148 0.852 23 H 0.168 0.832 24 H 0.137 0.863 25 H 0.118 0.882 26 H 0.246 0.754 27 H 0.186 0.814 28 H 0.124 0.876 29 H 0.244 0.756 30 H -0.214 1.214 31 H -0.226 1.226 32 H 0.162 0.838 33 H 0.170 0.830 34 H 0.119 0.881 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.882 0.286 1.606 2.491 hybrid contribution -0.640 -0.771 -0.213 1.024 sum -2.522 -0.485 1.393 2.922 Atomic orbital electron populations 1.30123 1.23091 1.13556 1.12902 1.07391 0.79517 0.74038 0.77682 1.93551 1.80889 1.36847 1.87403 1.93554 1.80777 1.67525 1.55540 1.31652 1.07293 1.08831 1.22195 0.80633 1.23393 1.01157 0.89666 1.02743 1.21769 0.97444 0.98620 0.79010 0.86625 1.44135 1.71392 1.11325 1.06363 1.18566 0.89933 0.87557 0.87802 1.67122 1.23703 1.32910 1.04193 1.22441 0.92574 0.87059 0.98887 1.21051 1.09091 0.97342 0.96597 1.24842 0.87392 0.96862 1.07435 1.86460 1.17151 1.44293 1.88572 0.93903 0.80283 0.83799 0.74937 1.21419 0.91691 0.98548 0.92279 1.21728 1.09359 0.92827 1.02586 1.23107 0.91382 0.98402 1.03202 0.83306 0.85202 0.83154 0.86272 0.88165 0.75367 0.81444 0.87551 0.75610 1.21390 1.22598 0.83799 0.82954 0.88138 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.45 10.62 113.37 1.20 7.65 16 2 S 2.43 -8.74 5.34 -56.49 -0.30 -9.04 16 3 O -0.99 -6.06 18.10 -127.37 -2.30 -8.37 16 4 O -0.98 -3.86 17.19 -127.37 -2.19 -6.05 16 5 C -0.59 5.50 4.06 31.12 0.13 5.62 16 6 H 0.18 -2.51 8.14 -2.39 -0.02 -2.53 16 7 C -0.13 1.21 7.42 31.12 0.23 1.44 16 8 C 0.14 -1.06 4.06 45.52 0.18 -0.87 16 9 H 0.12 -1.03 6.18 -2.39 -0.01 -1.05 16 10 N -0.70 3.12 5.44 -322.04 -1.75 1.37 16 11 C 0.40 0.11 7.65 133.06 1.02 1.13 16 12 N -0.56 -1.70 10.39 -193.26 -2.01 -3.71 16 13 C 0.15 0.06 9.84 84.62 0.83 0.89 16 14 C -0.24 0.12 5.36 -19.76 -0.11 0.01 16 15 C -0.05 0.08 2.82 71.24 0.20 0.28 16 16 O -0.56 0.42 12.84 -148.98 -1.91 -1.50 16 17 Si 0.76 -1.94 29.83 68.60 2.05 0.10 16 18 C -0.01 0.01 9.84 22.44 0.22 0.23 16 19 C -0.24 0.37 9.28 22.50 0.21 0.58 16 20 C -0.12 0.91 7.41 31.12 0.23 1.14 16 21 H 0.15 -2.05 8.14 -2.39 -0.02 -2.07 16 22 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 23 H 0.15 -2.09 8.14 -2.39 -0.02 -2.11 16 24 H 0.12 -1.11 7.36 -2.39 -0.02 -1.13 16 25 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 26 H 0.41 -2.28 8.83 -92.71 -0.82 -3.10 16 27 H 0.17 -0.64 4.91 -2.91 -0.01 -0.65 16 28 H 0.11 -0.06 7.96 -2.39 -0.02 -0.08 16 29 H 0.39 -3.30 8.70 -74.06 -0.64 -3.94 16 30 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 31 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 32 H 0.14 -0.41 8.06 -2.91 -0.02 -0.44 16 33 H 0.15 -0.89 6.07 -2.91 -0.02 -0.90 16 34 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 35 H 0.11 -0.81 8.10 -2.39 -0.02 -0.83 16 Total: 0.00 -27.44 306.72 -4.36 -31.80 By element: Atomic # 1 Polarization: -22.43 SS G_CDS: -0.29 Total: -22.72 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 4.35 Total: 18.11 kcal Atomic # 7 Polarization: 1.43 SS G_CDS: -3.76 Total: -2.34 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -6.41 Total: -15.92 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.05 Total: 0.10 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -0.30 Total: -9.04 kcal Total: -27.44 -4.36 -31.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.527 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds