Wall clock time and date at job start Mon Mar 8 2021 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42099 * 108.57864 * 2 1 4 4 O 1.42095 * 108.57731 * 228.97645 * 2 1 3 5 5 C 1.81402 * 101.92087 * 114.48639 * 2 1 3 6 6 H 1.09001 * 112.84764 * 53.80024 * 5 2 1 7 7 C 1.53780 * 113.61272 * 184.99885 * 5 2 1 8 8 C 1.53779 * 87.08039 * 140.06661 * 7 5 2 9 9 H 1.09002 * 113.61753 * 219.93334 * 8 7 5 10 10 N 1.46508 * 113.61591 * 89.11388 * 8 7 5 11 11 C 1.38609 * 120.00048 * 154.99896 * 10 8 7 12 12 N 1.29694 * 124.94873 * 359.97438 * 11 10 8 13 13 C 1.32115 * 116.86485 * 180.02562 * 12 11 10 14 14 C 1.33331 * 114.58076 * 0.02562 * 13 12 11 15 15 C 1.50702 * 125.95218 * 180.02562 * 14 13 12 16 16 O 1.42902 * 109.46978 * 64.96989 * 15 14 13 17 17 Si 1.86295 * 109.47350 * 184.96663 * 15 14 13 18 18 S 1.70958 * 124.95058 * 179.97438 * 11 10 8 19 19 C 1.53778 * 87.08202 * 334.56837 * 8 7 5 20 20 H 1.09007 * 109.46963 * 305.51246 * 1 2 3 21 21 H 1.09004 * 109.47281 * 65.50840 * 1 2 3 22 22 H 1.08992 * 109.47074 * 185.51364 * 1 2 3 23 23 H 1.08999 * 113.61391 * 25.51791 * 7 5 2 24 24 H 1.08997 * 113.61301 * 254.60975 * 7 5 2 25 25 H 0.96995 * 119.99527 * 334.99941 * 10 8 7 26 26 H 1.08003 * 122.71042 * 179.97438 * 13 12 11 27 27 H 1.09000 * 109.47163 * 304.97127 * 15 14 13 28 28 H 0.96701 * 114.00215 * 180.02562 * 16 15 14 29 29 H 1.48499 * 109.99992 * 300.00337 * 17 15 14 30 30 H 1.48504 * 109.99575 * 61.31953 * 17 15 14 31 31 H 1.08998 * 113.62011 * 139.98448 * 19 8 7 32 32 H 1.08999 * 113.61665 * 270.88376 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6153 6 1 1.6957 -1.6958 1.7677 7 6 3.6894 -0.7535 1.9508 8 6 3.2920 -0.3815 3.3890 9 1 3.9582 0.3467 3.8516 10 7 3.0348 -1.5418 4.2457 11 6 3.1782 -1.4340 5.6201 12 7 3.5347 -0.3564 6.2476 13 6 3.6217 -0.4330 7.5636 14 6 3.3257 -1.6302 8.0703 15 6 3.3411 -2.0012 9.5308 16 8 2.3352 -1.2577 10.2217 17 14 3.0005 -3.8238 9.7122 18 16 2.9112 -2.7020 6.7351 19 6 2.0173 0.2386 2.7927 20 1 -0.3633 0.5970 0.8366 21 1 -0.3634 0.4260 -0.9352 22 1 -0.3633 -1.0228 0.0987 23 1 4.2601 0.0225 1.4408 24 1 4.1442 -1.7404 1.8650 25 1 2.7641 -2.3855 3.8509 26 1 3.9102 0.4062 8.1793 27 1 4.3186 -1.7703 9.9541 28 1 2.2879 -1.4459 11.1691 29 1 1.6705 -4.1515 9.1388 30 1 4.0573 -4.6087 9.0248 31 1 1.1223 0.0528 3.3864 32 1 2.1309 1.2859 2.5129 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12912158_15704118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:45 Heat of formation + Delta-G solvation = -13.987669 kcal Electronic energy + Delta-G solvation = -18752.062786 eV Core-core repulsion = 15548.997813 eV Total energy + Delta-G solvation = -3203.064973 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 291.043 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14917 -40.08432 -38.06051 -37.75637 -37.09927 -35.26234 -31.45830 -30.44536 -27.42795 -26.96373 -26.31638 -24.47213 -21.83681 -20.69828 -19.72465 -19.43837 -18.52684 -18.24917 -17.45756 -17.16209 -17.01056 -16.67343 -16.07609 -15.83911 -15.43827 -15.26112 -14.72024 -14.35203 -14.19756 -14.09974 -13.97122 -13.86611 -13.67353 -13.19745 -13.08218 -12.91619 -12.56481 -12.28777 -12.14267 -12.06043 -11.90738 -11.34532 -11.02831 -10.79575 -10.42976 -10.24156 -8.90993 -5.18668 -0.97296 -0.22333 -0.09224 0.48935 1.23627 1.56906 1.77035 1.83141 1.91272 1.98120 2.54463 2.83048 3.13286 3.34726 3.45943 3.51457 3.57553 3.85876 3.97557 4.05225 4.19091 4.40759 4.47015 4.48816 4.56038 4.62711 4.64302 4.79444 4.83208 4.93481 5.08124 5.69578 6.00023 6.82738 6.92089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.427 3.573 3 O -0.978 6.978 4 O -0.987 6.987 5 C -0.589 4.589 6 H 0.182 0.818 7 C -0.121 4.121 8 C 0.143 3.857 9 H 0.102 0.898 10 N -0.665 5.665 11 C 0.327 3.673 12 N -0.568 5.568 13 C 0.110 3.890 14 C -0.272 4.272 15 C -0.024 4.024 16 O -0.563 6.563 17 Si 0.755 3.245 18 S 0.061 5.939 19 C -0.125 4.125 20 H 0.149 0.851 21 H 0.131 0.869 22 H 0.151 0.849 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.426 0.574 26 H 0.190 0.810 27 H 0.106 0.894 28 H 0.405 0.595 29 H -0.283 1.283 30 H -0.276 1.276 31 H 0.100 0.900 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 -3.462 5.839 7.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.615 3.385 3 O -0.976 6.976 4 O -0.985 6.985 5 C -0.699 4.699 6 H 0.199 0.801 7 C -0.160 4.160 8 C 0.034 3.966 9 H 0.120 0.880 10 N -0.305 5.305 11 C -0.044 4.044 12 N -0.294 5.294 13 C -0.040 4.040 14 C -0.394 4.394 15 C -0.137 4.137 16 O -0.374 6.374 17 Si 0.659 3.341 18 S 0.309 5.691 19 C -0.165 4.165 20 H 0.168 0.832 21 H 0.150 0.850 22 H 0.170 0.830 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.266 0.734 26 H 0.207 0.793 27 H 0.124 0.876 28 H 0.257 0.743 29 H -0.210 1.210 30 H -0.202 1.202 31 H 0.118 0.882 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.171 -4.101 3.655 5.907 hybrid contribution -0.270 0.522 0.322 0.671 sum -2.441 -3.579 3.977 5.881 Atomic orbital electron populations 1.30104 1.22657 1.13691 1.13009 1.07359 0.79696 0.74372 0.77092 1.93558 1.80897 1.36117 1.86987 1.93551 1.80969 1.67751 1.56194 1.31685 1.06880 1.13180 1.18173 0.80090 1.23126 0.91857 1.05649 0.95359 1.21742 0.97528 0.87831 0.89527 0.88026 1.43699 1.73439 1.14670 0.98701 1.23928 0.96508 0.92481 0.91456 1.66477 1.26953 1.26786 1.09148 1.21605 0.96857 0.97182 0.88376 1.24685 1.18889 0.96884 0.98976 1.23849 0.95535 1.07852 0.86476 1.86467 1.56271 1.67457 1.27190 0.94133 0.77735 0.72961 0.89262 1.84134 1.69776 1.15971 0.99228 1.23300 1.00637 0.98772 0.93805 0.83218 0.85035 0.83039 0.87222 0.87611 0.73430 0.79326 0.87610 0.74333 1.20962 1.20191 0.88162 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.06 10.62 113.37 1.20 7.26 16 2 S 2.43 -6.03 5.30 -56.49 -0.30 -6.33 16 3 O -0.98 -5.68 17.35 -127.37 -2.21 -7.89 16 4 O -0.99 -6.61 18.10 -127.37 -2.30 -8.91 16 5 C -0.59 4.65 4.03 31.12 0.13 4.78 16 6 H 0.18 -2.59 8.14 -2.39 -0.02 -2.61 16 7 C -0.12 0.61 7.42 31.12 0.23 0.84 16 8 C 0.14 -0.39 4.44 45.51 0.20 -0.18 16 9 H 0.10 0.10 7.66 -2.39 -0.02 0.08 16 10 N -0.67 1.40 5.42 -327.89 -1.78 -0.37 16 11 C 0.33 1.31 8.09 179.32 1.45 2.76 16 12 N -0.57 -4.17 9.83 -202.03 -1.99 -6.16 16 13 C 0.11 0.63 11.24 83.54 0.94 1.57 16 14 C -0.27 -1.25 5.76 24.58 0.14 -1.10 16 15 C -0.02 0.03 2.98 71.24 0.21 0.25 16 16 O -0.56 0.76 12.86 -148.98 -1.92 -1.15 16 17 Si 0.75 -1.86 31.07 68.60 2.13 0.27 16 18 S 0.06 0.25 20.59 -56.49 -1.16 -0.91 16 19 C -0.13 0.73 7.43 31.12 0.23 0.96 16 20 H 0.15 -1.95 8.14 -2.39 -0.02 -1.96 16 21 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 22 H 0.15 -2.08 8.14 -2.39 -0.02 -2.10 16 23 H 0.11 -0.46 8.10 -2.39 -0.02 -0.48 16 24 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H 0.43 -3.04 8.82 -92.71 -0.82 -3.86 16 26 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 27 H 0.11 -0.64 7.96 -2.39 -0.02 -0.66 16 28 H 0.40 -4.93 8.74 -74.06 -0.65 -5.58 16 29 H -0.28 -1.36 7.11 99.48 0.71 -0.65 16 30 H -0.28 -0.79 7.11 99.48 0.71 -0.08 16 31 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.11 -0.59 7.49 -2.39 -0.02 -0.61 16 Total: 0.00 -30.10 302.42 -5.05 -35.16 By element: Atomic # 1 Polarization: -20.56 SS G_CDS: -0.27 Total: -20.82 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 4.74 Total: 17.12 kcal Atomic # 7 Polarization: -2.77 SS G_CDS: -3.76 Total: -6.53 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -6.43 Total: -17.96 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: 2.13 Total: 0.27 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.46 Total: -7.24 kcal Total: -30.10 -5.05 -35.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_15704118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.169 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds