Wall clock time and date at job start Mon Mar 8 2021 06:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95410 * 2 1 4 4 C 1.50705 * 122.70694 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.46793 * 113.54426 * 4 3 2 6 6 Si 1.86298 * 109.46807 * 233.54226 * 4 3 2 7 7 N 1.32120 * 114.57971 * 180.29061 * 3 2 1 8 8 C 1.29685 * 116.86485 * 359.48148 * 7 3 2 9 9 N 1.38609 * 124.94588 * 180.22773 * 8 7 3 10 10 C 1.46504 * 119.99820 * 180.27890 * 9 8 7 11 11 H 1.08996 * 112.85198 * 23.80653 * 10 9 8 12 12 C 1.53786 * 113.61450 * 155.00028 * 10 9 8 13 13 C 1.53778 * 87.07957 * 89.11354 * 12 10 9 14 14 H 1.08998 * 113.62074 * 270.88220 * 13 12 10 15 15 S 1.81407 * 113.60866 * 140.06475 * 13 12 10 16 16 C 1.81406 * 101.91961 * 184.99971 * 15 13 12 17 17 O 1.42095 * 108.57927 * 299.48516 * 15 13 12 18 18 O 1.42090 * 108.57862 * 70.51675 * 15 13 12 19 19 C 1.53780 * 113.61623 * 252.49683 * 10 9 8 20 20 S 1.70963 * 110.10152 * 0.49333 * 8 7 3 21 21 H 1.08995 * 109.46588 * 84.88483 * 1 2 3 22 22 H 1.09003 * 109.46762 * 204.88424 * 1 2 3 23 23 H 1.08993 * 109.46837 * 324.88413 * 1 2 3 24 24 H 1.08994 * 109.46800 * 353.54398 * 4 3 2 25 25 H 0.96699 * 114.00244 * 59.99783 * 5 4 3 26 26 H 1.48503 * 109.99600 * 180.02562 * 6 4 3 27 27 H 1.48493 * 110.00279 * 301.31723 * 6 4 3 28 28 H 0.97002 * 120.00075 * 0.27944 * 9 8 7 29 29 H 1.08991 * 113.61525 * 203.66980 * 12 10 9 30 30 H 1.09006 * 113.61195 * 334.56404 * 12 10 9 31 31 H 1.09009 * 109.46816 * 60.00273 * 16 15 13 32 32 H 1.08997 * 109.47221 * 179.97438 * 16 15 13 33 33 H 1.08995 * 109.47133 * 300.00311 * 16 15 13 34 34 H 1.09002 * 113.61338 * 25.43357 * 19 10 9 35 35 H 1.08999 * 113.61450 * 156.33435 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 2.0699 3.1222 1.2358 6 14 2.4872 3.4415 -1.4122 7 7 3.5851 0.8187 -0.0061 8 6 3.9315 -0.4310 -0.0008 9 7 5.2385 -0.8926 -0.0012 10 6 5.5066 -2.3329 -0.0010 11 1 4.6804 -2.9173 -0.4059 12 6 6.8745 -2.7050 -0.5970 13 6 7.4479 -2.5440 0.8207 14 1 7.7793 -1.5301 1.0453 15 16 8.6834 -3.8005 1.2518 16 6 9.0198 -3.4137 2.9919 17 8 8.0703 -5.0805 1.1829 18 8 9.8619 -3.5541 0.4973 19 6 6.0365 -2.8607 1.3427 20 16 2.5413 -1.4261 -0.0005 21 1 -0.3632 0.0916 -1.0236 22 1 -0.3633 -0.9323 0.4324 23 1 -0.3633 0.8406 0.5911 24 1 0.6581 2.4498 -0.1146 25 1 3.0198 3.1868 1.4048 26 1 1.9549 4.8278 -1.4223 27 1 3.9664 3.4670 -1.2839 28 1 5.9756 -0.2621 -0.0017 29 1 6.9232 -3.7263 -0.9744 30 1 7.2551 -1.9715 -1.3079 31 1 8.0991 -3.5035 3.5686 32 1 9.7619 -4.1102 3.3821 33 1 9.4000 -2.3952 3.0708 34 1 5.7406 -2.2529 2.1978 35 1 5.8560 -3.9247 1.4956 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12912158_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:49 Heat of formation + Delta-G solvation = -15.636936 kcal Electronic energy + Delta-G solvation = -20720.365526 eV Core-core repulsion = 17361.691417 eV Total energy + Delta-G solvation = -3358.674109 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.059 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.27019 -40.58105 -38.09470 -37.62185 -37.13124 -35.53511 -32.87715 -30.76977 -29.10109 -27.28625 -27.02327 -25.67807 -24.49125 -21.77629 -20.61200 -19.97567 -18.99139 -18.52756 -17.97975 -17.37466 -17.32953 -17.16926 -16.74536 -16.35199 -15.81255 -15.50846 -15.33439 -14.69543 -14.54663 -14.34198 -14.21185 -14.19325 -13.98770 -13.83539 -13.79603 -13.61818 -13.19992 -13.09029 -12.92193 -12.58637 -12.31990 -12.22474 -12.11122 -11.76488 -11.37768 -11.19474 -10.71459 -10.47913 -10.06317 -8.75128 -4.88699 -1.16885 -0.06867 0.09811 0.70504 1.30188 1.52363 1.67235 1.77610 1.82756 2.15561 2.31847 2.57168 2.86538 3.10730 3.13398 3.31857 3.47093 3.57731 3.68467 3.81682 3.94964 4.00529 4.15854 4.16091 4.25664 4.34145 4.43159 4.46428 4.54214 4.56050 4.61294 4.85789 4.88920 5.15902 5.45592 6.12923 6.40971 6.84941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.238 4.238 3 C 0.072 3.928 4 C -0.036 4.036 5 O -0.526 6.526 6 Si 0.698 3.302 7 N -0.545 5.545 8 C 0.316 3.684 9 N -0.678 5.678 10 C 0.139 3.861 11 H 0.108 0.892 12 C -0.111 4.111 13 C -0.611 4.611 14 H 0.152 0.848 15 S 2.427 3.573 16 C -0.654 4.654 17 O -0.933 6.933 18 O -0.936 6.936 19 C -0.131 4.131 20 S 0.111 5.889 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.379 0.621 26 H -0.256 1.256 27 H -0.252 1.252 28 H 0.413 0.587 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -1.228 0.137 2.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.361 4.361 3 C -0.058 4.058 4 C -0.148 4.148 5 O -0.332 6.332 6 Si 0.597 3.403 7 N -0.270 5.270 8 C -0.055 4.055 9 N -0.318 5.318 10 C 0.031 3.969 11 H 0.125 0.875 12 C -0.150 4.150 13 C -0.719 4.719 14 H 0.170 0.830 15 S 2.609 3.391 16 C -0.804 4.804 17 O -0.930 6.930 18 O -0.933 6.933 19 C -0.172 4.172 20 S 0.360 5.640 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.140 0.860 25 H 0.228 0.772 26 H -0.181 1.181 27 H -0.176 1.176 28 H 0.252 0.748 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.113 0.887 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.570 -2.019 -0.584 2.623 hybrid contribution 0.607 1.790 1.749 2.575 sum -0.963 -0.229 1.165 1.528 Atomic orbital electron populations 1.20223 0.86661 1.03357 1.03053 1.25158 1.01235 0.93072 1.16667 1.19990 0.86693 0.97145 1.01958 1.24633 1.04550 0.89834 0.95829 1.86571 1.29603 1.79848 1.37170 0.94741 0.81138 0.79999 0.84379 1.66028 1.17512 1.16796 1.26695 1.23216 0.91577 0.91692 0.98992 1.43486 1.02018 1.05871 1.80466 1.21769 0.98227 0.80322 0.96535 0.87453 1.23011 0.94238 1.04927 0.92820 1.31797 1.13537 1.19137 1.07432 0.82979 1.07724 0.76293 0.76785 0.78305 1.30229 1.12274 1.12582 1.25281 1.93618 1.77722 1.35548 1.86090 1.93621 1.45329 1.86072 1.68310 1.23368 0.90375 1.04134 0.99275 1.83968 0.96246 1.10062 1.73685 0.90352 0.91209 0.90152 0.85971 0.77244 1.18127 1.17616 0.74823 0.86695 0.88247 0.85203 0.85086 0.85329 0.88747 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.12 9.71 36.01 0.35 0.47 16 2 C -0.24 -0.15 6.57 -36.02 -0.24 -0.39 16 3 C 0.07 0.12 5.20 -84.18 -0.44 -0.31 16 4 C -0.04 -0.04 2.84 36.01 0.10 0.07 16 5 O -0.53 -1.38 12.88 -35.23 -0.45 -1.83 16 6 Si 0.70 0.46 32.61 -169.99 -5.54 -5.09 16 7 N -0.54 -1.25 9.76 -11.36 -0.11 -1.36 16 8 C 0.32 0.20 8.24 -87.68 -0.72 -0.53 16 9 N -0.68 1.25 5.42 -54.99 -0.30 0.95 16 10 C 0.14 -0.48 4.31 -67.11 -0.29 -0.76 16 11 H 0.11 -0.40 7.06 -51.93 -0.37 -0.77 16 12 C -0.11 0.43 7.42 -25.92 -0.19 0.24 16 13 C -0.61 2.79 4.04 -25.92 -0.10 2.68 16 14 H 0.15 -0.99 8.14 -51.93 -0.42 -1.41 16 15 S 2.43 -5.55 5.30 -107.50 -0.57 -6.12 16 16 C -0.65 3.04 10.62 101.05 1.07 4.11 16 17 O -0.93 -1.02 17.35 -57.83 -1.00 -2.02 16 18 O -0.94 -2.03 18.10 -57.83 -1.05 -3.07 16 19 C -0.13 0.58 7.43 -25.92 -0.19 0.39 16 20 S 0.11 -0.03 21.69 -107.50 -2.33 -2.37 16 21 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 22 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 23 H 0.08 -0.14 7.17 -51.93 -0.37 -0.51 16 24 H 0.12 -0.09 6.33 -51.93 -0.33 -0.42 16 25 H 0.38 0.33 8.70 45.56 0.40 0.72 16 26 H -0.26 -0.79 7.11 56.52 0.40 -0.39 16 27 H -0.25 -0.94 7.11 56.52 0.40 -0.54 16 28 H 0.41 -1.04 8.83 -40.82 -0.36 -1.40 16 29 H 0.11 -0.50 8.10 -51.93 -0.42 -0.92 16 30 H 0.10 -0.42 8.14 -51.93 -0.42 -0.85 16 31 H 0.13 -0.80 8.14 -51.92 -0.42 -1.23 16 32 H 0.13 -0.58 8.14 -51.93 -0.42 -1.01 16 33 H 0.13 -0.78 8.14 -51.93 -0.42 -1.20 16 34 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 35 H 0.12 -0.58 7.49 -51.93 -0.39 -0.97 16 LS Contribution 322.49 15.07 4.86 4.86 Total: 0.00 -11.50 322.49 -11.57 -23.07 By element: Atomic # 1 Polarization: -8.56 SS G_CDS: -4.42 Total: -12.98 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.65 Total: 5.96 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -0.41 Total: -0.42 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -2.50 Total: -6.93 kcal Atomic # 14 Polarization: 0.46 SS G_CDS: -5.54 Total: -5.09 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -2.90 Total: -8.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -11.50 -11.57 -23.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.436 kcal (2) G-P(sol) polarization free energy of solvation -11.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds