Wall clock time and date at job start Mon Mar 8 2021 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95410 * 2 1 4 4 C 1.50705 * 122.70694 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.46793 * 113.54426 * 4 3 2 6 6 Si 1.86298 * 109.46807 * 233.54226 * 4 3 2 7 7 N 1.32120 * 114.57971 * 180.29061 * 3 2 1 8 8 C 1.29685 * 116.86485 * 359.48148 * 7 3 2 9 9 N 1.38609 * 124.94588 * 180.22773 * 8 7 3 10 10 C 1.46504 * 119.99820 * 180.27890 * 9 8 7 11 11 H 1.08996 * 112.85198 * 23.80653 * 10 9 8 12 12 C 1.53786 * 113.61450 * 155.00028 * 10 9 8 13 13 C 1.53778 * 87.07957 * 89.11354 * 12 10 9 14 14 H 1.08998 * 113.62074 * 270.88220 * 13 12 10 15 15 S 1.81407 * 113.60866 * 140.06475 * 13 12 10 16 16 C 1.81406 * 101.91961 * 184.99971 * 15 13 12 17 17 O 1.42095 * 108.57927 * 299.48516 * 15 13 12 18 18 O 1.42090 * 108.57862 * 70.51675 * 15 13 12 19 19 C 1.53780 * 113.61623 * 252.49683 * 10 9 8 20 20 S 1.70963 * 110.10152 * 0.49333 * 8 7 3 21 21 H 1.08995 * 109.46588 * 84.88483 * 1 2 3 22 22 H 1.09003 * 109.46762 * 204.88424 * 1 2 3 23 23 H 1.08993 * 109.46837 * 324.88413 * 1 2 3 24 24 H 1.08994 * 109.46800 * 353.54398 * 4 3 2 25 25 H 0.96699 * 114.00244 * 59.99783 * 5 4 3 26 26 H 1.48503 * 109.99600 * 180.02562 * 6 4 3 27 27 H 1.48493 * 110.00279 * 301.31723 * 6 4 3 28 28 H 0.97002 * 120.00075 * 0.27944 * 9 8 7 29 29 H 1.08991 * 113.61525 * 203.66980 * 12 10 9 30 30 H 1.09006 * 113.61195 * 334.56404 * 12 10 9 31 31 H 1.09009 * 109.46816 * 60.00273 * 16 15 13 32 32 H 1.08997 * 109.47221 * 179.97438 * 16 15 13 33 33 H 1.08995 * 109.47133 * 300.00311 * 16 15 13 34 34 H 1.09002 * 113.61338 * 25.43357 * 19 10 9 35 35 H 1.08999 * 113.61450 * 156.33435 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 2.0699 3.1222 1.2358 6 14 2.4872 3.4415 -1.4122 7 7 3.5851 0.8187 -0.0061 8 6 3.9315 -0.4310 -0.0008 9 7 5.2385 -0.8926 -0.0012 10 6 5.5066 -2.3329 -0.0010 11 1 4.6804 -2.9173 -0.4059 12 6 6.8745 -2.7050 -0.5970 13 6 7.4479 -2.5440 0.8207 14 1 7.7793 -1.5301 1.0453 15 16 8.6834 -3.8005 1.2518 16 6 9.0198 -3.4137 2.9919 17 8 8.0703 -5.0805 1.1829 18 8 9.8619 -3.5541 0.4973 19 6 6.0365 -2.8607 1.3427 20 16 2.5413 -1.4261 -0.0005 21 1 -0.3632 0.0916 -1.0236 22 1 -0.3633 -0.9323 0.4324 23 1 -0.3633 0.8406 0.5911 24 1 0.6581 2.4498 -0.1146 25 1 3.0198 3.1868 1.4048 26 1 1.9549 4.8278 -1.4223 27 1 3.9664 3.4670 -1.2839 28 1 5.9756 -0.2621 -0.0017 29 1 6.9232 -3.7263 -0.9744 30 1 7.2551 -1.9715 -1.3079 31 1 8.0991 -3.5035 3.5686 32 1 9.7619 -4.1102 3.3821 33 1 9.4000 -2.3952 3.0708 34 1 5.7406 -2.2529 2.1978 35 1 5.8560 -3.9247 1.4956 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12912158_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:48 Heat of formation + Delta-G solvation = -20.855889 kcal Electronic energy + Delta-G solvation = -20720.591837 eV Core-core repulsion = 17361.691417 eV Total energy + Delta-G solvation = -3358.900420 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19234 -40.40029 -38.05136 -37.70717 -37.08531 -35.42934 -32.77446 -30.43618 -29.07301 -26.96322 -26.82425 -25.61097 -24.44448 -21.59027 -20.54189 -19.82005 -18.90188 -18.38083 -18.04937 -17.27101 -17.15100 -16.98745 -16.59395 -16.34283 -15.80085 -15.51099 -15.18424 -14.46277 -14.26132 -14.23492 -14.02050 -13.95321 -13.88848 -13.67526 -13.61377 -13.52681 -13.18660 -13.07113 -12.96276 -12.49407 -12.15297 -12.06066 -11.90097 -11.82708 -11.18793 -11.07069 -10.70614 -10.50895 -10.05098 -8.67973 -4.97429 -0.95976 -0.04754 0.14671 0.72642 1.24327 1.66702 1.75122 1.76095 1.83993 2.05842 2.56379 2.83290 3.13865 3.29726 3.35852 3.41614 3.59479 3.84047 4.04363 4.06214 4.18704 4.23254 4.26974 4.50062 4.50434 4.55971 4.65305 4.81167 4.81837 4.85822 4.93625 4.94872 5.02986 5.29670 5.61288 6.26726 6.34157 6.88291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.246 4.246 3 C 0.055 3.945 4 C -0.042 4.042 5 O -0.542 6.542 6 Si 0.773 3.227 7 N -0.572 5.572 8 C 0.306 3.694 9 N -0.672 5.672 10 C 0.134 3.866 11 H 0.111 0.889 12 C -0.119 4.119 13 C -0.591 4.591 14 H 0.176 0.824 15 S 2.427 3.573 16 C -0.644 4.644 17 O -0.974 6.974 18 O -0.990 6.990 19 C -0.128 4.128 20 S 0.132 5.868 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.140 0.860 25 H 0.384 0.616 26 H -0.290 1.290 27 H -0.297 1.297 28 H 0.416 0.584 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 -1.353 0.792 3.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.369 4.369 3 C -0.075 4.075 4 C -0.153 4.153 5 O -0.349 6.349 6 Si 0.678 3.322 7 N -0.299 5.299 8 C -0.065 4.065 9 N -0.312 5.312 10 C 0.026 3.974 11 H 0.129 0.871 12 C -0.158 4.158 13 C -0.702 4.702 14 H 0.194 0.806 15 S 2.615 3.385 16 C -0.796 4.796 17 O -0.972 6.972 18 O -0.987 6.987 19 C -0.168 4.168 20 S 0.381 5.619 21 H 0.112 0.888 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.158 0.842 25 H 0.232 0.768 26 H -0.217 1.217 27 H -0.224 1.224 28 H 0.255 0.745 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.170 0.830 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.123 0.877 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.370 -2.197 0.049 3.232 hybrid contribution 0.881 1.851 1.581 2.589 sum -1.489 -0.345 1.630 2.234 Atomic orbital electron populations 1.20328 0.85243 1.03733 1.04161 1.25507 1.02386 0.93228 1.15782 1.20041 0.86825 0.97491 1.03110 1.24799 1.05669 0.89783 0.95082 1.86540 1.30155 1.80139 1.38047 0.93890 0.77344 0.77537 0.83476 1.66027 1.18090 1.17821 1.27977 1.23461 0.92627 0.91657 0.98780 1.43589 1.01345 1.06527 1.79733 1.21882 0.98517 0.79530 0.97422 0.87124 1.23115 0.94093 1.05249 0.93346 1.31670 1.12327 1.19122 1.07032 0.80623 1.07355 0.75552 0.76477 0.79111 1.30119 1.13579 1.13757 1.22177 1.93559 1.78142 1.38364 1.87103 1.93553 1.47805 1.86735 1.70579 1.23416 0.89750 1.04645 0.99019 1.83836 0.95414 1.09248 1.73355 0.88780 0.90653 0.89979 0.84215 0.76759 1.21720 1.22392 0.74511 0.86538 0.87849 0.83026 0.85116 0.83348 0.87745 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.33 9.71 71.24 0.69 1.02 16 2 C -0.25 -0.17 6.57 24.58 0.16 0.00 16 3 C 0.06 0.18 5.20 41.41 0.22 0.40 16 4 C -0.04 -0.09 2.84 71.24 0.20 0.12 16 5 O -0.54 -3.08 12.88 -148.98 -1.92 -5.00 16 6 Si 0.77 1.62 32.61 68.60 2.24 3.86 16 7 N -0.57 -2.78 9.76 -189.86 -1.85 -4.64 16 8 C 0.31 0.31 8.24 179.32 1.48 1.79 16 9 N -0.67 2.78 5.42 -327.89 -1.78 1.01 16 10 C 0.13 -1.00 4.31 45.52 0.20 -0.80 16 11 H 0.11 -0.88 7.06 -2.39 -0.02 -0.90 16 12 C -0.12 0.94 7.42 31.12 0.23 1.17 16 13 C -0.59 5.80 4.04 31.12 0.13 5.92 16 14 H 0.18 -2.56 8.14 -2.39 -0.02 -2.58 16 15 S 2.43 -9.95 5.30 -56.49 -0.30 -10.25 16 16 C -0.64 6.75 10.62 113.37 1.20 7.95 16 17 O -0.97 -3.19 17.35 -127.37 -2.21 -5.40 16 18 O -0.99 -5.72 18.10 -127.37 -2.30 -8.02 16 19 C -0.13 1.27 7.43 31.12 0.23 1.50 16 20 S 0.13 -0.16 21.69 -56.49 -1.23 -1.39 16 21 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 22 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.08 -0.37 7.17 -2.39 -0.02 -0.39 16 24 H 0.14 -0.29 6.33 -2.39 -0.02 -0.31 16 25 H 0.38 1.04 8.70 -74.06 -0.64 0.39 16 26 H -0.29 -2.13 7.11 99.48 0.71 -1.43 16 27 H -0.30 -2.80 7.11 99.48 0.71 -2.09 16 28 H 0.42 -2.28 8.83 -92.71 -0.82 -3.10 16 29 H 0.12 -0.94 8.10 -2.39 -0.02 -0.96 16 30 H 0.10 -0.88 8.14 -2.38 -0.02 -0.90 16 31 H 0.15 -2.21 8.14 -2.39 -0.02 -2.23 16 32 H 0.13 -1.25 8.14 -2.39 -0.02 -1.27 16 33 H 0.15 -2.09 8.14 -2.39 -0.02 -2.11 16 34 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 35 H 0.12 -1.31 7.49 -2.39 -0.02 -1.33 16 Total: 0.00 -27.40 322.49 -4.90 -32.30 By element: Atomic # 1 Polarization: -21.26 SS G_CDS: -0.29 Total: -21.55 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 4.74 Total: 19.07 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -3.63 Total: -3.63 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -6.43 Total: -18.42 kcal Atomic # 14 Polarization: 1.62 SS G_CDS: 2.24 Total: 3.86 kcal Atomic # 16 Polarization: -10.11 SS G_CDS: -1.52 Total: -11.64 kcal Total: -27.40 -4.90 -32.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.444 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds