Wall clock time and date at job start Mon Mar 8 2021 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42098 * 108.57500 * 2 1 4 4 O 1.42098 * 108.57726 * 228.97268 * 2 1 3 5 5 C 1.81396 * 101.92205 * 114.48537 * 2 1 3 6 6 H 1.09003 * 112.85074 * 311.19631 * 5 2 1 7 7 C 1.54052 * 113.61986 * 82.50734 * 5 2 1 8 8 C 1.53772 * 86.98758 * 139.97991 * 7 5 2 9 9 H 1.09000 * 113.61716 * 219.98170 * 8 7 5 10 10 N 1.46504 * 113.61783 * 89.16177 * 8 7 5 11 11 C 1.39142 * 120.00005 * 105.86486 * 10 8 7 12 12 N 1.32331 * 119.71869 * 359.97438 * 11 10 8 13 13 C 1.32010 * 121.64729 * 179.97438 * 12 11 10 14 14 C 1.37983 * 120.90221 * 359.96989 * 13 12 11 15 15 C 1.50695 * 120.32808 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.46955 * 120.00791 * 15 14 13 17 17 Si 1.86300 * 109.47389 * 0.02562 * 15 14 13 18 18 C 1.38906 * 119.34333 * 0.28616 * 14 13 12 19 19 C 1.38440 * 118.48566 * 359.49772 * 18 14 13 20 20 F 1.35108 * 120.47348 * 180.22101 * 19 18 14 21 21 C 1.53777 * 87.17464 * 334.57063 * 8 7 5 22 22 H 1.09000 * 109.46893 * 305.51235 * 1 2 3 23 23 H 1.08997 * 109.46839 * 65.51427 * 1 2 3 24 24 H 1.09002 * 109.46963 * 185.51302 * 1 2 3 25 25 H 1.09001 * 113.61500 * 25.47295 * 7 5 2 26 26 H 1.09003 * 113.69476 * 254.49775 * 7 5 2 27 27 H 0.96999 * 119.99828 * 285.86261 * 10 8 7 28 28 H 1.08002 * 119.55182 * 180.02562 * 13 12 11 29 29 H 1.09001 * 109.47545 * 240.00335 * 15 14 13 30 30 H 0.96700 * 113.99995 * 299.99800 * 16 15 14 31 31 H 1.48498 * 109.99998 * 179.97438 * 17 15 14 32 32 H 1.48498 * 109.99919 * 301.31690 * 17 15 14 33 33 H 1.07998 * 120.75565 * 179.72459 * 18 14 13 34 34 H 1.09002 * 113.61614 * 140.02041 * 21 8 7 35 35 H 1.09003 * 113.62036 * 270.93036 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1888 -0.7356 1.6152 6 1 1.6289 -0.2760 2.4298 7 6 2.1362 -2.2752 1.6194 8 6 3.3796 -2.2343 2.5233 9 1 4.1166 -3.0018 2.2870 10 7 3.0644 -2.1692 3.9525 11 6 3.2362 -3.2930 4.7547 12 7 3.6841 -4.4179 4.2208 13 6 3.8616 -5.5064 4.9464 14 6 3.5848 -5.5099 6.2981 15 6 3.7917 -6.7600 7.1139 16 8 4.7429 -6.5016 8.1485 17 14 4.4268 -8.1221 6.0130 18 6 3.1075 -4.3517 6.8983 19 6 2.9356 -3.2242 6.1136 20 9 2.4779 -2.0748 6.6567 21 6 3.6947 -0.8648 1.8989 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0987 25 1 2.3213 -2.7211 0.6422 26 1 1.2524 -2.6820 2.1108 27 1 2.7360 -1.3426 4.3395 28 1 4.2293 -6.4062 4.4756 29 1 2.8444 -7.0642 7.5592 30 1 5.6112 -6.2254 7.8245 31 1 4.6355 -9.3602 6.8058 32 1 3.4615 -8.3787 4.9142 33 1 2.8793 -4.3302 7.9537 34 1 4.0682 -0.1336 2.6158 35 1 4.3050 -0.9256 0.9978 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12912158_17656566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:52 Heat of formation + Delta-G solvation = -61.377426 kcal Electronic energy + Delta-G solvation = -22528.160173 eV Core-core repulsion = 18764.434004 eV Total energy + Delta-G solvation = -3763.726169 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.077 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -49.96487 -41.62682 -40.37721 -38.07364 -37.95862 -37.05709 -35.48470 -33.26883 -31.36963 -30.69269 -27.39894 -27.12809 -26.26784 -24.78682 -23.08746 -21.14877 -19.99031 -19.56450 -18.71136 -18.33232 -17.98291 -17.60963 -17.26895 -17.08395 -16.98158 -16.53118 -16.19221 -16.03197 -15.44785 -15.35596 -14.95800 -14.59147 -14.41089 -14.31417 -14.21629 -13.99251 -13.95203 -13.80048 -13.45027 -13.12594 -13.01480 -12.69616 -12.39461 -12.20495 -12.11738 -12.02655 -11.49117 -11.13471 -10.79698 -10.73833 -10.52875 -8.91210 -5.13704 -1.08960 -0.16696 0.02234 1.16881 1.52630 1.60699 1.76532 1.88642 2.40821 2.46323 2.67386 2.93600 2.98369 3.15625 3.22420 3.33485 3.41932 3.50627 3.59680 3.73321 3.75605 3.87389 3.91184 4.27862 4.31065 4.33827 4.35006 4.44236 4.56162 4.57620 4.62213 4.64130 4.78675 4.88904 5.29750 5.81063 6.03365 6.46474 6.83231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.426 3.574 3 O -0.938 6.938 4 O -0.933 6.933 5 C -0.611 4.611 6 H 0.149 0.851 7 C -0.128 4.128 8 C 0.147 3.853 9 H 0.119 0.881 10 N -0.701 5.701 11 C 0.391 3.609 12 N -0.509 5.509 13 C 0.147 3.853 14 C -0.206 4.206 15 C -0.056 4.056 16 O -0.540 6.540 17 Si 0.686 3.314 18 C -0.037 4.037 19 C -0.018 4.018 20 F -0.133 7.133 21 C -0.115 4.115 22 H 0.127 0.873 23 H 0.130 0.870 24 H 0.129 0.871 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.413 0.587 28 H 0.165 0.835 29 H 0.116 0.884 30 H 0.380 0.620 31 H -0.251 1.251 32 H -0.253 1.253 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -1.682 1.068 1.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.608 3.392 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.720 4.720 6 H 0.167 0.833 7 C -0.167 4.167 8 C 0.040 3.960 9 H 0.137 0.863 10 N -0.334 5.334 11 C 0.153 3.847 12 N -0.225 5.225 13 C -0.010 4.010 14 C -0.212 4.212 15 C -0.167 4.167 16 O -0.345 6.345 17 Si 0.588 3.412 18 C -0.064 4.064 19 C -0.044 4.044 20 F -0.112 7.112 21 C -0.154 4.154 22 H 0.146 0.854 23 H 0.148 0.852 24 H 0.147 0.853 25 H 0.135 0.865 26 H 0.107 0.893 27 H 0.251 0.749 28 H 0.181 0.819 29 H 0.133 0.867 30 H 0.228 0.772 31 H -0.176 1.176 32 H -0.178 1.178 33 H 0.168 0.832 34 H 0.113 0.887 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.009 -2.328 -0.602 2.404 hybrid contribution -1.771 0.833 2.090 2.863 sum -1.762 -1.495 1.488 2.748 Atomic orbital electron populations 1.30239 1.26711 1.11628 1.11857 1.07739 0.78427 0.75586 0.77427 1.93615 1.79098 1.34332 1.86450 1.93615 1.79152 1.67116 1.53158 1.31851 1.07384 1.09208 1.23556 0.83284 1.23348 1.01179 0.89303 1.02915 1.21636 0.97075 0.98022 0.79271 0.86308 1.44170 1.71272 1.10733 1.07192 1.18367 0.91952 0.88277 0.86131 1.67285 1.18675 0.98254 1.38311 1.22373 0.93579 0.95149 0.89860 1.20972 1.07268 0.97385 0.95540 1.24871 0.96249 1.00118 0.95481 1.86515 1.24544 1.90605 1.32872 0.94810 0.89105 0.78067 0.79231 1.21295 0.94061 0.90120 1.00889 1.17992 1.10464 0.84749 0.91233 1.91500 1.87064 1.46811 1.85853 1.23027 0.90748 0.98545 1.03100 0.85411 0.85182 0.85263 0.86516 0.89325 0.74929 0.81887 0.86675 0.77238 1.17555 1.17821 0.83197 0.88709 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.65 10.62 101.05 1.07 3.72 16 2 S 2.43 -3.80 5.34 -107.50 -0.57 -4.38 16 3 O -0.94 -2.54 18.10 -57.83 -1.05 -3.59 16 4 O -0.93 -1.80 17.19 -57.83 -0.99 -2.80 16 5 C -0.61 2.25 4.06 -25.78 -0.10 2.15 16 6 H 0.15 -0.87 8.14 -51.93 -0.42 -1.30 16 7 C -0.13 0.39 7.44 -25.78 -0.19 0.20 16 8 C 0.15 -0.32 4.32 -67.12 -0.29 -0.61 16 9 H 0.12 -0.19 7.45 -51.93 -0.39 -0.57 16 10 N -0.70 1.05 5.42 -53.07 -0.29 0.76 16 11 C 0.39 0.10 7.49 -154.86 -1.16 -1.06 16 12 N -0.51 -0.18 9.15 -12.37 -0.11 -0.29 16 13 C 0.15 -0.16 9.84 -17.57 -0.17 -0.34 16 14 C -0.21 0.25 5.39 -104.47 -0.56 -0.32 16 15 C -0.06 0.10 2.83 36.00 0.10 0.20 16 16 O -0.54 0.63 12.78 -35.23 -0.45 0.18 16 17 Si 0.69 -1.79 29.82 -169.99 -5.07 -6.85 16 18 C -0.04 0.01 9.76 -39.26 -0.38 -0.37 16 19 C -0.02 -0.01 7.35 -39.10 -0.29 -0.30 16 20 F -0.13 -0.16 16.65 2.25 0.04 -0.12 16 21 C -0.12 0.33 7.41 -25.92 -0.19 0.14 16 22 H 0.13 -0.71 8.14 -51.92 -0.42 -1.13 16 23 H 0.13 -0.51 8.14 -51.93 -0.42 -0.93 16 24 H 0.13 -0.71 8.14 -51.92 -0.42 -1.13 16 25 H 0.12 -0.36 7.37 -51.93 -0.38 -0.75 16 26 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 27 H 0.41 -1.09 8.18 -40.82 -0.33 -1.42 16 28 H 0.16 -0.54 4.88 -52.49 -0.26 -0.79 16 29 H 0.12 -0.17 7.96 -51.93 -0.41 -0.58 16 30 H 0.38 -1.88 8.70 45.56 0.40 -1.48 16 31 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 32 H -0.25 0.12 7.11 56.52 0.40 0.52 16 33 H 0.15 -0.14 8.06 -52.49 -0.42 -0.57 16 34 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 35 H 0.11 -0.35 8.10 -51.93 -0.42 -0.77 16 LS Contribution 314.71 15.07 4.74 4.74 Total: 0.00 -11.24 314.71 -9.88 -21.11 By element: Atomic # 1 Polarization: -8.24 SS G_CDS: -3.95 Total: -12.19 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.17 Total: 3.42 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -0.40 Total: 0.46 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -2.49 Total: -6.20 kcal Atomic # 9 Polarization: -0.16 SS G_CDS: 0.04 Total: -0.12 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: -5.07 Total: -6.85 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -0.57 Total: -4.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -11.24 -9.88 -21.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_17656566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.263 kcal (2) G-P(sol) polarization free energy of solvation -11.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds