Wall clock time and date at job start Mon Mar 8 2021 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42098 * 108.57500 * 2 1 4 4 O 1.42098 * 108.57726 * 228.97268 * 2 1 3 5 5 C 1.81396 * 101.92205 * 114.48537 * 2 1 3 6 6 H 1.09003 * 112.85074 * 311.19631 * 5 2 1 7 7 C 1.54052 * 113.61986 * 82.50734 * 5 2 1 8 8 C 1.53772 * 86.98758 * 139.97991 * 7 5 2 9 9 H 1.09000 * 113.61716 * 219.98170 * 8 7 5 10 10 N 1.46504 * 113.61783 * 89.16177 * 8 7 5 11 11 C 1.39142 * 120.00005 * 105.86486 * 10 8 7 12 12 N 1.32331 * 119.71869 * 359.97438 * 11 10 8 13 13 C 1.32010 * 121.64729 * 179.97438 * 12 11 10 14 14 C 1.37983 * 120.90221 * 359.96989 * 13 12 11 15 15 C 1.50695 * 120.32808 * 179.97438 * 14 13 12 16 16 O 1.42898 * 109.46955 * 120.00791 * 15 14 13 17 17 Si 1.86300 * 109.47389 * 0.02562 * 15 14 13 18 18 C 1.38906 * 119.34333 * 0.28616 * 14 13 12 19 19 C 1.38440 * 118.48566 * 359.49772 * 18 14 13 20 20 F 1.35108 * 120.47348 * 180.22101 * 19 18 14 21 21 C 1.53777 * 87.17464 * 334.57063 * 8 7 5 22 22 H 1.09000 * 109.46893 * 305.51235 * 1 2 3 23 23 H 1.08997 * 109.46839 * 65.51427 * 1 2 3 24 24 H 1.09002 * 109.46963 * 185.51302 * 1 2 3 25 25 H 1.09001 * 113.61500 * 25.47295 * 7 5 2 26 26 H 1.09003 * 113.69476 * 254.49775 * 7 5 2 27 27 H 0.96999 * 119.99828 * 285.86261 * 10 8 7 28 28 H 1.08002 * 119.55182 * 180.02562 * 13 12 11 29 29 H 1.09001 * 109.47545 * 240.00335 * 15 14 13 30 30 H 0.96700 * 113.99995 * 299.99800 * 16 15 14 31 31 H 1.48498 * 109.99998 * 179.97438 * 17 15 14 32 32 H 1.48498 * 109.99919 * 301.31690 * 17 15 14 33 33 H 1.07998 * 120.75565 * 179.72459 * 18 14 13 34 34 H 1.09002 * 113.61614 * 140.02041 * 21 8 7 35 35 H 1.09003 * 113.62036 * 270.93036 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1888 -0.7356 1.6152 6 1 1.6289 -0.2760 2.4298 7 6 2.1362 -2.2752 1.6194 8 6 3.3796 -2.2343 2.5233 9 1 4.1166 -3.0018 2.2870 10 7 3.0644 -2.1692 3.9525 11 6 3.2362 -3.2930 4.7547 12 7 3.6841 -4.4179 4.2208 13 6 3.8616 -5.5064 4.9464 14 6 3.5848 -5.5099 6.2981 15 6 3.7917 -6.7600 7.1139 16 8 4.7429 -6.5016 8.1485 17 14 4.4268 -8.1221 6.0130 18 6 3.1075 -4.3517 6.8983 19 6 2.9356 -3.2242 6.1136 20 9 2.4779 -2.0748 6.6567 21 6 3.6947 -0.8648 1.8989 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0987 25 1 2.3213 -2.7211 0.6422 26 1 1.2524 -2.6820 2.1108 27 1 2.7360 -1.3426 4.3395 28 1 4.2293 -6.4062 4.4756 29 1 2.8444 -7.0642 7.5592 30 1 5.6112 -6.2254 7.8245 31 1 4.6355 -9.3602 6.8058 32 1 3.4615 -8.3787 4.9142 33 1 2.8793 -4.3302 7.9537 34 1 4.0682 -0.1336 2.6158 35 1 4.3050 -0.9256 0.9978 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12912158_17656566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:49:51 Heat of formation + Delta-G solvation = -66.427502 kcal Electronic energy + Delta-G solvation = -22528.379160 eV Core-core repulsion = 18764.434004 eV Total energy + Delta-G solvation = -3763.945157 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.077 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.97426 -41.53476 -40.20493 -38.04560 -37.87213 -37.06565 -35.35971 -33.20392 -31.26975 -30.40956 -27.25129 -26.89903 -26.13791 -24.70069 -23.00496 -20.99831 -19.85241 -19.47588 -18.60953 -18.27223 -17.85468 -17.51766 -17.15111 -17.02131 -16.90761 -16.39354 -16.08663 -15.92075 -15.39628 -15.20132 -14.84355 -14.41028 -14.33935 -14.07285 -13.96987 -13.87108 -13.79087 -13.62474 -13.36322 -13.16314 -13.04505 -12.57172 -12.21341 -12.13261 -11.99807 -11.85928 -11.33618 -10.97646 -10.73596 -10.67780 -10.41028 -8.81446 -4.95808 -0.93731 -0.10397 0.08264 1.32738 1.66825 1.79622 1.90225 2.01341 2.51216 2.60201 2.85899 2.99865 3.16928 3.29299 3.41837 3.49192 3.61984 3.66314 3.85350 3.89399 3.98516 4.06670 4.21388 4.41942 4.47126 4.52105 4.55147 4.65057 4.71150 4.79489 4.87587 4.94628 4.97539 4.98420 5.39975 5.93640 6.16149 6.79357 6.93032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.426 3.574 3 O -0.989 6.989 4 O -0.977 6.977 5 C -0.590 4.590 6 H 0.177 0.823 7 C -0.125 4.125 8 C 0.144 3.856 9 H 0.112 0.888 10 N -0.696 5.696 11 C 0.384 3.616 12 N -0.523 5.523 13 C 0.147 3.853 14 C -0.203 4.203 15 C -0.059 4.059 16 O -0.556 6.556 17 Si 0.773 3.227 18 C -0.041 4.041 19 C -0.034 4.034 20 F -0.140 7.140 21 C -0.123 4.123 22 H 0.149 0.851 23 H 0.130 0.870 24 H 0.150 0.850 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.418 0.582 28 H 0.184 0.816 29 H 0.111 0.889 30 H 0.396 0.604 31 H -0.299 1.299 32 H -0.278 1.278 33 H 0.153 0.847 34 H 0.101 0.899 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -1.892 1.483 2.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.614 3.386 3 O -0.986 6.986 4 O -0.974 6.974 5 C -0.701 4.701 6 H 0.195 0.805 7 C -0.165 4.165 8 C 0.036 3.964 9 H 0.129 0.871 10 N -0.329 5.329 11 C 0.146 3.854 12 N -0.239 5.239 13 C -0.010 4.010 14 C -0.208 4.208 15 C -0.169 4.169 16 O -0.364 6.364 17 Si 0.678 3.322 18 C -0.067 4.067 19 C -0.060 4.060 20 F -0.119 7.119 21 C -0.162 4.162 22 H 0.168 0.832 23 H 0.149 0.851 24 H 0.168 0.832 25 H 0.133 0.867 26 H 0.116 0.884 27 H 0.257 0.743 28 H 0.200 0.800 29 H 0.129 0.871 30 H 0.246 0.754 31 H -0.227 1.227 32 H -0.204 1.204 33 H 0.171 0.829 34 H 0.119 0.881 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.587 -2.483 -0.218 2.561 hybrid contribution -1.601 0.827 2.027 2.713 sum -2.188 -1.656 1.809 3.287 Atomic orbital electron populations 1.30116 1.22946 1.13550 1.12969 1.07380 0.79589 0.74020 0.77610 1.93550 1.80923 1.36738 1.87364 1.93555 1.80814 1.67542 1.55517 1.31728 1.07225 1.08738 1.22392 0.80522 1.23355 1.01043 0.89468 1.02663 1.21649 0.97491 0.98136 0.79075 0.87056 1.44196 1.70878 1.10536 1.07273 1.18497 0.91936 0.88717 0.86264 1.67342 1.19245 0.98638 1.38715 1.22707 0.92902 0.95441 0.89926 1.20997 1.07024 0.97263 0.95567 1.24981 0.96271 1.00172 0.95511 1.86479 1.25684 1.90705 1.33548 0.93793 0.87142 0.74796 0.76421 1.21426 0.93926 0.90271 1.01114 1.18105 1.11506 0.84824 0.91584 1.91475 1.87281 1.47194 1.85977 1.23111 0.91406 0.98429 1.03218 0.83220 0.85116 0.83200 0.86663 0.88442 0.74326 0.80003 0.87122 0.75390 1.22672 1.20439 0.82903 0.88055 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.07 10.62 113.37 1.20 7.27 16 2 S 2.43 -6.44 5.34 -56.49 -0.30 -6.74 16 3 O -0.99 -6.64 18.10 -127.37 -2.30 -8.94 16 4 O -0.98 -5.07 17.19 -127.37 -2.19 -7.26 16 5 C -0.59 4.72 4.06 31.21 0.13 4.84 16 6 H 0.18 -2.41 8.14 -2.39 -0.02 -2.43 16 7 C -0.13 0.85 7.44 31.21 0.23 1.08 16 8 C 0.14 -0.65 4.32 45.51 0.20 -0.45 16 9 H 0.11 -0.31 7.45 -2.39 -0.02 -0.33 16 10 N -0.70 2.34 5.42 -321.81 -1.74 0.59 16 11 C 0.38 0.15 7.49 133.09 1.00 1.15 16 12 N -0.52 -0.22 9.15 -193.04 -1.77 -1.99 16 13 C 0.15 -0.41 9.84 84.61 0.83 0.43 16 14 C -0.20 0.56 5.39 -19.77 -0.11 0.45 16 15 C -0.06 0.23 2.83 71.23 0.20 0.43 16 16 O -0.56 1.54 12.78 -148.98 -1.90 -0.37 16 17 Si 0.77 -4.24 29.82 68.60 2.05 -2.20 16 18 C -0.04 0.02 9.76 22.48 0.22 0.24 16 19 C -0.03 -0.04 7.35 22.58 0.17 0.13 16 20 F -0.14 -0.36 16.65 44.97 0.75 0.39 16 21 C -0.12 0.69 7.41 31.12 0.23 0.92 16 22 H 0.15 -2.01 8.14 -2.39 -0.02 -2.03 16 23 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 24 H 0.15 -1.98 8.14 -2.39 -0.02 -2.00 16 25 H 0.12 -0.71 7.37 -2.39 -0.02 -0.72 16 26 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.42 -2.45 8.18 -92.71 -0.76 -3.21 16 28 H 0.18 -1.39 4.88 -2.91 -0.01 -1.40 16 29 H 0.11 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.40 -4.20 8.70 -74.06 -0.64 -4.84 16 31 H -0.30 -0.79 7.11 99.48 0.71 -0.09 16 32 H -0.28 0.38 7.11 99.48 0.71 1.09 16 33 H 0.15 -0.26 8.06 -2.91 -0.02 -0.28 16 34 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.11 -0.57 8.10 -2.39 -0.02 -0.59 16 Total: 0.00 -26.56 314.71 -3.33 -29.89 By element: Atomic # 1 Polarization: -19.66 SS G_CDS: -0.22 Total: -19.87 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 4.30 Total: 16.49 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -3.51 Total: -1.40 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -6.40 Total: -16.57 kcal Atomic # 9 Polarization: -0.36 SS G_CDS: 0.75 Total: 0.39 kcal Atomic # 14 Polarization: -4.24 SS G_CDS: 2.05 Total: -2.20 kcal Atomic # 16 Polarization: -6.44 SS G_CDS: -0.30 Total: -6.74 kcal Total: -26.56 -3.33 -29.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12912158_17656566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.536 kcal (2) G-P(sol) polarization free energy of solvation -26.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds