Wall clock time and date at job start Mon Mar 8 2021 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00318 * 2 1 4 4 Si 1.86303 * 109.46996 * 269.99790 * 3 2 1 5 5 C 1.86298 * 109.46880 * 60.00054 * 4 3 2 6 6 C 1.86306 * 109.46936 * 179.97438 * 4 3 2 7 7 C 1.86290 * 109.47228 * 299.99934 * 4 3 2 8 8 C 1.38407 * 119.99545 * 179.97438 * 2 1 3 9 9 N 1.32486 * 119.22032 * 359.97438 * 8 2 1 10 10 C 1.32283 * 120.74232 * 179.97438 * 9 8 2 11 11 C 1.38600 * 119.19467 * 0.28666 * 10 9 8 12 12 C 1.50697 * 120.72097 * 179.69988 * 11 10 9 13 13 O 1.42905 * 109.47433 * 64.99443 * 12 11 10 14 14 Si 1.86297 * 109.47454 * 184.99466 * 12 11 10 15 15 H 1.48504 * 109.47037 * 59.99755 * 14 12 11 16 16 H 1.48503 * 109.47230 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47124 * 300.00047 * 14 12 11 18 18 C 1.38611 * 118.55990 * 359.42678 * 11 10 9 19 19 N 1.32271 * 119.19509 * 0.56948 * 18 11 10 20 20 H 1.08999 * 109.46867 * 270.00626 * 1 2 3 21 21 H 1.09003 * 109.46902 * 29.99667 * 1 2 3 22 22 H 1.08990 * 109.47506 * 150.00136 * 1 2 3 23 23 H 1.09001 * 109.47184 * 29.99839 * 3 2 1 24 24 H 1.09006 * 109.47633 * 150.00127 * 3 2 1 25 25 H 1.09001 * 109.47216 * 60.00003 * 5 4 3 26 26 H 1.09007 * 109.46876 * 179.97438 * 5 4 3 27 27 H 1.08994 * 109.47487 * 299.99897 * 5 4 3 28 28 H 1.08995 * 109.47301 * 60.00096 * 6 4 3 29 29 H 1.09003 * 109.46498 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47237 * 300.00044 * 6 4 3 31 31 H 1.09004 * 109.47325 * 59.99987 * 7 4 3 32 32 H 1.09007 * 109.47175 * 180.02562 * 7 4 3 33 33 H 1.09003 * 109.47390 * 299.99958 * 7 4 3 34 34 H 1.08002 * 120.39924 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.46951 * 304.99400 * 12 11 10 36 36 H 0.96691 * 113.99940 * 60.00018 * 13 12 11 37 37 H 1.07997 * 120.40306 * 180.28888 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 14 2.5081 1.8064 -1.7565 5 6 0.8803 2.0292 -2.6347 6 6 3.4390 3.4202 -1.7565 7 6 3.5149 0.5080 -2.6346 8 6 2.1569 -1.1987 0.0005 9 7 1.4789 -2.3369 0.0016 10 6 2.1095 -3.4997 0.0016 11 6 3.4954 -3.5171 0.0066 12 6 4.2489 -4.8222 0.0136 13 8 3.9982 -5.5236 -1.2060 14 14 6.0742 -4.4848 0.1719 15 1 6.3347 -3.7559 1.4393 16 1 6.8165 -5.7709 0.1794 17 1 6.5262 -3.6584 -0.9762 18 6 4.1734 -2.3082 -0.0008 19 7 3.4818 -1.1806 -0.0008 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5137 23 1 1.6085 2.0283 0.5138 24 1 3.1500 1.1383 0.5138 25 1 0.2912 2.7889 -2.1209 26 1 1.0620 2.3443 -3.6623 27 1 0.3352 1.0853 -2.6347 28 1 4.3914 3.2903 -1.2425 29 1 3.6203 3.7349 -2.7842 30 1 2.8496 4.1797 -1.2428 31 1 2.9698 -0.4360 -2.6346 32 1 3.6970 0.8229 -3.6622 33 1 4.4673 0.3776 -2.1208 34 1 1.5512 -4.4242 0.0020 35 1 3.9171 -5.4288 0.8563 36 1 4.2691 -5.0420 -1.9995 37 1 5.2531 -2.2871 -0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13068046_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:40:22 Heat of formation + Delta-G solvation = -8.396668 kcal Electronic energy + Delta-G solvation = -17561.591153 eV Core-core repulsion = 14884.185782 eV Total energy + Delta-G solvation = -2677.405370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.00799 -38.42015 -37.21232 -34.64187 -32.75351 -29.68048 -29.08154 -28.41874 -28.30341 -27.67758 -25.37784 -24.87959 -22.42985 -19.06473 -18.64005 -17.90938 -16.80464 -16.31649 -16.05093 -15.97989 -15.48703 -14.77107 -14.67760 -14.31829 -14.22053 -14.10817 -13.90887 -13.80824 -13.45940 -13.31099 -13.11265 -13.06254 -12.98875 -12.90947 -12.24711 -12.19392 -11.92043 -11.68801 -11.62029 -10.92025 -10.81554 -10.71106 -10.49106 -9.87512 -8.56301 0.14327 0.26200 1.11431 1.38129 1.45608 1.51862 1.70185 1.84913 1.87904 2.02171 2.58684 2.94459 3.23093 3.45455 3.59732 3.76677 3.80185 4.24981 4.29591 4.35393 4.56578 4.60692 4.66061 4.68481 4.70142 4.71536 4.80138 4.82097 4.84728 4.90831 4.96159 5.30015 5.41833 5.49239 5.60344 5.82128 5.92843 6.44808 6.51862 7.34368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.565 5.565 3 C -0.164 4.164 4 Si 0.998 3.002 5 C -0.448 4.448 6 C -0.447 4.447 7 C -0.435 4.435 8 C 0.562 3.438 9 N -0.569 5.569 10 C 0.225 3.775 11 C -0.300 4.300 12 C -0.057 4.057 13 O -0.539 6.539 14 Si 0.937 3.063 15 H -0.248 1.248 16 H -0.249 1.249 17 H -0.249 1.249 18 C 0.191 3.809 19 N -0.558 5.558 20 H 0.053 0.947 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.118 0.882 36 H 0.376 0.624 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 1.384 -0.288 1.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.280 5.280 3 C -0.333 4.333 4 Si 1.193 2.807 5 C -0.556 4.556 6 C -0.555 4.555 7 C -0.543 4.543 8 C 0.207 3.793 9 N -0.291 5.291 10 C 0.057 3.943 11 C -0.309 4.309 12 C -0.169 4.169 13 O -0.344 6.344 14 Si 0.760 3.240 15 H -0.172 1.172 16 H -0.172 1.172 17 H -0.173 1.173 18 C 0.023 3.977 19 N -0.280 5.280 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.187 0.813 35 H 0.136 0.864 36 H 0.223 0.777 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.166 2.209 0.248 2.229 hybrid contribution 0.175 -0.449 -0.264 0.549 sum 0.341 1.760 -0.016 1.793 Atomic orbital electron populations 1.21776 0.77343 1.03640 1.02125 1.45644 1.05549 1.01174 1.75596 1.26592 1.00631 0.86657 1.19417 0.79638 0.67538 0.67069 0.66412 1.26162 1.16765 1.04505 1.08152 1.26075 1.08608 1.16205 1.04641 1.26019 1.09407 1.11602 1.07256 1.19277 0.85292 0.86364 0.88347 1.67984 1.40768 0.97857 1.22460 1.22820 0.90832 0.95174 0.85490 1.21625 0.97269 0.97346 1.14653 1.24596 1.09698 0.91987 0.90654 1.86519 1.86884 1.45961 1.15064 0.85857 0.75106 0.81256 0.81779 1.17206 1.17240 1.17299 1.22783 0.99809 0.86872 0.88268 1.67867 1.06927 1.31068 1.22094 0.92849 0.90667 0.89812 0.89931 0.88546 0.91249 0.91166 0.91274 0.91003 0.91042 0.91186 0.92293 0.91786 0.90795 0.81283 0.86392 0.77727 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.03 10.20 59.85 0.61 0.58 16 2 N -0.57 -0.66 2.46 -121.37 -0.30 -0.96 16 3 C -0.16 0.09 4.64 59.84 0.28 0.37 16 4 Si 1.00 -1.74 12.33 -169.99 -2.10 -3.84 16 5 C -0.45 0.55 7.97 101.05 0.80 1.35 16 6 C -0.45 0.64 8.65 101.05 0.87 1.52 16 7 C -0.43 -0.16 8.04 101.05 0.81 0.66 16 8 C 0.56 1.65 7.77 -322.80 -2.51 -0.86 16 9 N -0.57 -1.69 9.11 -13.93 -0.13 -1.82 16 10 C 0.23 0.27 10.99 -17.22 -0.19 0.08 16 11 C -0.30 -0.09 5.36 -104.35 -0.56 -0.65 16 12 C -0.06 0.07 2.83 36.00 0.10 0.17 16 13 O -0.54 0.26 12.85 -35.23 -0.45 -0.19 16 14 Si 0.94 -1.16 25.21 -169.99 -4.29 -5.45 16 15 H -0.25 0.13 7.11 56.52 0.40 0.53 16 16 H -0.25 -0.07 7.11 56.52 0.40 0.34 16 17 H -0.25 0.29 7.05 56.52 0.40 0.69 16 18 C 0.19 0.21 9.92 -17.23 -0.17 0.04 16 19 N -0.56 -1.46 8.40 -13.93 -0.12 -1.57 16 20 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 21 H 0.07 -0.17 6.83 -51.93 -0.35 -0.52 16 22 H 0.08 0.03 7.33 -51.93 -0.38 -0.36 16 23 H 0.08 -0.17 7.89 -51.93 -0.41 -0.58 16 24 H 0.10 0.03 7.16 -51.93 -0.37 -0.34 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 27 H 0.07 -0.04 7.46 -51.93 -0.39 -0.43 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.06 0.11 7.79 -51.93 -0.40 -0.29 16 32 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 33 H 0.07 0.06 7.96 -51.93 -0.41 -0.35 16 34 H 0.17 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.12 -0.25 7.96 -51.93 -0.41 -0.67 16 36 H 0.38 -1.25 8.70 45.56 0.40 -0.85 16 37 H 0.16 -0.13 5.03 -52.49 -0.26 -0.39 16 LS Contribution 306.11 15.07 4.61 4.61 Total: 0.00 -5.33 306.11 -7.84 -13.17 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -5.13 Total: -7.21 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.05 Total: 3.25 kcal Atomic # 7 Polarization: -3.81 SS G_CDS: -0.54 Total: -4.35 kcal Atomic # 8 Polarization: 0.26 SS G_CDS: -0.45 Total: -0.19 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: -6.38 Total: -9.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -5.33 -7.84 -13.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.770 kcal (2) G-P(sol) polarization free energy of solvation -5.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds