Wall clock time and date at job start Mon Mar 8 2021 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46495 * 120.00318 * 2 1 4 4 Si 1.86303 * 109.46996 * 269.99790 * 3 2 1 5 5 C 1.86298 * 109.46880 * 60.00054 * 4 3 2 6 6 C 1.86306 * 109.46936 * 179.97438 * 4 3 2 7 7 C 1.86290 * 109.47228 * 299.99934 * 4 3 2 8 8 C 1.38407 * 119.99545 * 179.97438 * 2 1 3 9 9 N 1.32486 * 119.22032 * 359.97438 * 8 2 1 10 10 C 1.32283 * 120.74232 * 179.97438 * 9 8 2 11 11 C 1.38600 * 119.19467 * 0.28666 * 10 9 8 12 12 C 1.50697 * 120.72097 * 179.69988 * 11 10 9 13 13 O 1.42905 * 109.47433 * 64.99443 * 12 11 10 14 14 Si 1.86297 * 109.47454 * 184.99466 * 12 11 10 15 15 H 1.48504 * 109.47037 * 59.99755 * 14 12 11 16 16 H 1.48503 * 109.47230 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47124 * 300.00047 * 14 12 11 18 18 C 1.38611 * 118.55990 * 359.42678 * 11 10 9 19 19 N 1.32271 * 119.19509 * 0.56948 * 18 11 10 20 20 H 1.08999 * 109.46867 * 270.00626 * 1 2 3 21 21 H 1.09003 * 109.46902 * 29.99667 * 1 2 3 22 22 H 1.08990 * 109.47506 * 150.00136 * 1 2 3 23 23 H 1.09001 * 109.47184 * 29.99839 * 3 2 1 24 24 H 1.09006 * 109.47633 * 150.00127 * 3 2 1 25 25 H 1.09001 * 109.47216 * 60.00003 * 5 4 3 26 26 H 1.09007 * 109.46876 * 179.97438 * 5 4 3 27 27 H 1.08994 * 109.47487 * 299.99897 * 5 4 3 28 28 H 1.08995 * 109.47301 * 60.00096 * 6 4 3 29 29 H 1.09003 * 109.46498 * 180.02562 * 6 4 3 30 30 H 1.09001 * 109.47237 * 300.00044 * 6 4 3 31 31 H 1.09004 * 109.47325 * 59.99987 * 7 4 3 32 32 H 1.09007 * 109.47175 * 180.02562 * 7 4 3 33 33 H 1.09003 * 109.47390 * 299.99958 * 7 4 3 34 34 H 1.08002 * 120.39924 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.46951 * 304.99400 * 12 11 10 36 36 H 0.96691 * 113.99940 * 60.00018 * 13 12 11 37 37 H 1.07997 * 120.40306 * 180.28888 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 14 2.5081 1.8064 -1.7565 5 6 0.8803 2.0292 -2.6347 6 6 3.4390 3.4202 -1.7565 7 6 3.5149 0.5080 -2.6346 8 6 2.1569 -1.1987 0.0005 9 7 1.4789 -2.3369 0.0016 10 6 2.1095 -3.4997 0.0016 11 6 3.4954 -3.5171 0.0066 12 6 4.2489 -4.8222 0.0136 13 8 3.9982 -5.5236 -1.2060 14 14 6.0742 -4.4848 0.1719 15 1 6.3347 -3.7559 1.4393 16 1 6.8165 -5.7709 0.1794 17 1 6.5262 -3.6584 -0.9762 18 6 4.1734 -2.3082 -0.0008 19 7 3.4818 -1.1806 -0.0008 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5137 23 1 1.6085 2.0283 0.5138 24 1 3.1500 1.1383 0.5138 25 1 0.2912 2.7889 -2.1209 26 1 1.0620 2.3443 -3.6623 27 1 0.3352 1.0853 -2.6347 28 1 4.3914 3.2903 -1.2425 29 1 3.6203 3.7349 -2.7842 30 1 2.8496 4.1797 -1.2428 31 1 2.9698 -0.4360 -2.6346 32 1 3.6970 0.8229 -3.6622 33 1 4.4673 0.3776 -2.1208 34 1 1.5512 -4.4242 0.0020 35 1 3.9171 -5.4288 0.8563 36 1 4.2691 -5.0420 -1.9995 37 1 5.2531 -2.2871 -0.0019 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13068046_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:40:22 Heat of formation + Delta-G solvation = -0.329974 kcal Electronic energy + Delta-G solvation = -17561.241355 eV Core-core repulsion = 14884.185782 eV Total energy + Delta-G solvation = -2677.055572 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.07316 -38.39866 -37.19137 -34.73394 -32.77697 -29.61091 -29.01963 -28.38549 -28.21729 -27.66620 -25.43609 -24.85342 -22.46127 -19.09940 -18.68238 -17.89293 -16.83560 -16.29955 -16.00965 -15.96940 -15.47192 -14.76553 -14.68059 -14.31271 -14.15465 -14.02410 -13.85395 -13.77658 -13.40361 -13.23274 -13.07639 -13.02610 -12.92133 -12.85940 -12.19832 -12.19273 -11.89817 -11.79653 -11.61429 -10.83131 -10.77144 -10.69986 -10.47333 -9.94330 -8.57402 0.07384 0.18531 1.19655 1.46099 1.51859 1.56271 1.79554 1.93335 1.95466 2.11337 2.65483 2.86434 3.19675 3.56054 3.59811 3.73928 3.82120 4.26727 4.33890 4.42636 4.61338 4.70172 4.71952 4.77692 4.78962 4.80636 4.81930 4.83673 4.85180 4.94485 5.02271 5.29003 5.50597 5.58672 5.62441 5.83590 5.87526 6.38311 6.71591 7.25879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.568 5.568 3 C -0.177 4.177 4 Si 1.058 2.942 5 C -0.456 4.456 6 C -0.453 4.453 7 C -0.449 4.449 8 C 0.544 3.456 9 N -0.588 5.588 10 C 0.216 3.784 11 C -0.294 4.294 12 C -0.051 4.051 13 O -0.551 6.551 14 Si 0.968 3.032 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.250 1.250 18 C 0.179 3.821 19 N -0.571 5.571 20 H 0.053 0.947 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.186 0.814 35 H 0.129 0.871 36 H 0.387 0.613 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 1.934 -0.282 1.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.283 5.283 3 C -0.344 4.344 4 Si 1.250 2.750 5 C -0.563 4.563 6 C -0.561 4.561 7 C -0.555 4.555 8 C 0.189 3.811 9 N -0.310 5.310 10 C 0.048 3.952 11 C -0.302 4.302 12 C -0.163 4.163 13 O -0.358 6.358 14 Si 0.793 3.207 15 H -0.182 1.182 16 H -0.194 1.194 17 H -0.174 1.174 18 C 0.011 3.989 19 N -0.294 5.294 20 H 0.071 0.929 21 H 0.114 0.886 22 H 0.092 0.908 23 H 0.118 0.882 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.203 0.797 35 H 0.147 0.853 36 H 0.236 0.764 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.030 2.752 0.240 2.762 hybrid contribution 0.263 -0.651 -0.276 0.755 sum 0.233 2.100 -0.036 2.114 Atomic orbital electron populations 1.21856 0.76719 1.04207 1.02260 1.45862 1.06080 1.01170 1.75142 1.26850 1.00460 0.86407 1.20731 0.78730 0.66293 0.65441 0.64537 1.26242 1.17164 1.04557 1.08321 1.26135 1.08745 1.16513 1.04754 1.26267 1.09512 1.11899 1.07807 1.19563 0.85631 0.86980 0.88922 1.68002 1.41349 0.98405 1.23293 1.23170 0.91470 0.95339 0.85238 1.21730 0.97031 0.97708 1.13778 1.24622 1.09446 0.91374 0.90907 1.86492 1.87040 1.46517 1.15755 0.85422 0.74430 0.79768 0.81126 1.18157 1.19378 1.17353 1.23122 1.00573 0.86999 0.88180 1.67885 1.07004 1.31755 1.22715 0.92880 0.88607 0.90750 0.88174 0.89522 0.90156 0.91281 0.91874 0.91127 0.91059 0.90347 0.94114 0.91730 0.91542 0.79736 0.85303 0.76425 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.05 10.20 127.77 1.30 1.26 16 2 N -0.57 -1.62 2.46 -537.90 -1.32 -2.94 16 3 C -0.18 0.20 4.64 127.77 0.59 0.80 16 4 Si 1.06 -3.81 12.33 68.60 0.85 -2.97 16 5 C -0.46 1.39 7.97 113.37 0.90 2.29 16 6 C -0.45 1.63 8.65 113.37 0.98 2.61 16 7 C -0.45 -0.78 8.04 113.37 0.91 0.13 16 8 C 0.54 3.73 7.77 261.48 2.03 5.76 16 9 N -0.59 -4.07 9.11 -197.98 -1.80 -5.88 16 10 C 0.22 0.64 10.99 84.71 0.93 1.57 16 11 C -0.29 -0.30 5.36 -19.69 -0.11 -0.40 16 12 C -0.05 0.13 2.83 71.24 0.20 0.33 16 13 O -0.55 0.65 12.85 -148.98 -1.91 -1.27 16 14 Si 0.97 -2.29 25.21 68.60 1.73 -0.56 16 15 H -0.26 0.23 7.11 99.48 0.71 0.94 16 16 H -0.27 -0.28 7.11 99.48 0.71 0.43 16 17 H -0.25 0.61 7.05 99.48 0.70 1.31 16 18 C 0.18 0.52 9.92 84.72 0.84 1.37 16 19 N -0.57 -3.57 8.40 -197.99 -1.66 -5.24 16 20 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 21 H 0.10 -0.49 6.83 -2.39 -0.02 -0.51 16 22 H 0.07 0.11 7.33 -2.39 -0.02 0.09 16 23 H 0.10 -0.50 7.89 -2.39 -0.02 -0.52 16 24 H 0.09 0.09 7.16 -2.38 -0.02 0.08 16 25 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 26 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 27 H 0.06 -0.09 7.46 -2.39 -0.02 -0.11 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 30 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.04 0.22 7.79 -2.39 -0.02 0.20 16 32 H 0.06 0.07 7.96 -2.38 -0.02 0.05 16 33 H 0.07 0.20 7.96 -2.39 -0.02 0.18 16 34 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 35 H 0.13 -0.62 7.96 -2.39 -0.02 -0.64 16 36 H 0.39 -2.59 8.70 -74.06 -0.64 -3.23 16 37 H 0.17 -0.19 5.03 -2.91 -0.01 -0.21 16 Total: 0.00 -12.52 306.11 5.62 -6.90 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: 1.16 Total: -3.76 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 8.59 Total: 15.71 kcal Atomic # 7 Polarization: -9.27 SS G_CDS: -4.79 Total: -14.06 kcal Atomic # 8 Polarization: 0.65 SS G_CDS: -1.91 Total: -1.27 kcal Atomic # 14 Polarization: -6.10 SS G_CDS: 2.58 Total: -3.53 kcal Total: -12.52 5.62 -6.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.570 kcal (2) G-P(sol) polarization free energy of solvation -12.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds