Wall clock time and date at job start Mon Mar 8 2021 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99981 * 2 1 4 4 Si 1.86296 * 109.46983 * 270.00079 * 3 2 1 5 5 C 1.86308 * 109.47219 * 60.00335 * 4 3 2 6 6 C 1.86301 * 109.47130 * 180.02562 * 4 3 2 7 7 C 1.86296 * 109.47565 * 300.00261 * 4 3 2 8 8 C 1.39006 * 120.00117 * 180.02562 * 2 1 3 9 9 C 1.39096 * 119.70129 * 4.97627 * 8 2 1 10 10 C 1.38344 * 119.09689 * 180.02562 * 9 8 2 11 11 C 1.38835 * 118.50821 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.33739 * 179.97438 * 11 10 9 13 13 O 1.42894 * 109.47473 * 65.02139 * 12 11 10 14 14 Si 1.86305 * 109.46873 * 185.02133 * 12 11 10 15 15 H 1.48504 * 109.46887 * 179.97438 * 14 12 11 16 16 H 1.48505 * 109.47194 * 299.99615 * 14 12 11 17 17 H 1.48500 * 109.47258 * 60.00026 * 14 12 11 18 18 C 1.38068 * 119.32537 * 359.97438 * 11 10 9 19 19 N 1.31944 * 120.85569 * 0.02562 * 18 11 10 20 20 H 1.09003 * 109.46527 * 270.00032 * 1 2 3 21 21 H 1.09000 * 109.46868 * 29.99634 * 1 2 3 22 22 H 1.08991 * 109.47280 * 149.99792 * 1 2 3 23 23 H 1.08994 * 109.47024 * 30.00712 * 3 2 1 24 24 H 1.09002 * 109.46986 * 150.00216 * 3 2 1 25 25 H 1.09003 * 109.46644 * 59.99892 * 5 4 3 26 26 H 1.08996 * 109.46963 * 179.97438 * 5 4 3 27 27 H 1.08995 * 109.46979 * 299.99715 * 5 4 3 28 28 H 1.09002 * 109.47039 * 60.00014 * 6 4 3 29 29 H 1.08996 * 109.47549 * 179.97438 * 6 4 3 30 30 H 1.09003 * 109.46917 * 300.00353 * 6 4 3 31 31 H 1.08999 * 109.47549 * 59.99725 * 7 4 3 32 32 H 1.08996 * 109.47402 * 180.02562 * 7 4 3 33 33 H 1.09002 * 109.46867 * 300.00146 * 7 4 3 34 34 H 1.07996 * 120.45333 * 0.02562 * 9 8 2 35 35 H 1.08004 * 120.74536 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47170 * 305.01872 * 12 11 10 37 37 H 0.96698 * 114.00591 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.57504 * 180.02562 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 14 2.5080 1.8066 -1.7564 5 6 0.8801 2.0294 -2.6347 6 6 3.4402 3.4196 -1.7565 7 6 3.5147 0.5083 -2.6348 8 6 2.1601 -1.2038 -0.0005 9 6 1.4623 -2.4025 -0.1059 10 6 2.1665 -3.5932 -0.1046 11 6 3.5499 -3.5448 0.0018 12 6 4.3579 -4.8168 0.0080 13 8 4.2267 -5.4706 -1.2559 14 14 6.1504 -4.4124 0.3149 15 1 6.9465 -5.6660 0.3216 16 1 6.6467 -3.5160 -0.7600 17 1 6.2868 -3.7331 1.6283 18 6 4.1779 -2.3193 0.1020 19 7 3.4806 -1.1992 0.0981 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 1.6085 2.0284 0.5139 24 1 3.1500 1.1384 0.5138 25 1 0.2911 2.7891 -2.1207 26 1 1.0617 2.3445 -3.6621 27 1 0.3351 1.0855 -2.6347 28 1 4.3926 3.2888 -1.2428 29 1 3.6222 3.7340 -2.7841 30 1 2.8515 4.1794 -1.2424 31 1 2.9698 -0.4357 -2.6348 32 1 3.6967 0.8231 -3.6623 33 1 4.4672 0.3779 -2.1210 34 1 0.3854 -2.4036 -0.1875 35 1 1.6518 -4.5393 -0.1854 36 1 3.9936 -5.4748 0.7969 37 1 4.7213 -6.2987 -1.3236 38 1 5.2540 -2.2769 0.1845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13068046_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:40:29 Heat of formation + Delta-G solvation = -23.459841 kcal Electronic energy + Delta-G solvation = -17381.635986 eV Core-core repulsion = 14769.003339 eV Total energy + Delta-G solvation = -2612.632648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27923 -38.21388 -37.00817 -33.40660 -32.01600 -29.59019 -29.06893 -28.33938 -28.22217 -27.29320 -24.81000 -23.88948 -21.80827 -18.49986 -18.45284 -17.67915 -16.51352 -16.27951 -15.97626 -15.58801 -15.08724 -14.52027 -14.23893 -14.20801 -14.15800 -13.98393 -13.80211 -13.74741 -13.71132 -13.34025 -13.20290 -13.04011 -12.91827 -12.81359 -12.23900 -12.04358 -11.86010 -11.79776 -10.85533 -10.72650 -10.63176 -10.42326 -10.32598 -10.06306 -8.20053 0.36973 0.56957 1.19441 1.45560 1.53312 1.69766 1.82619 1.92715 1.94088 2.20622 2.67920 2.96696 3.52700 3.60238 3.93477 4.03736 4.15962 4.24685 4.34846 4.44868 4.51411 4.54745 4.69493 4.72116 4.74543 4.76288 4.76787 4.88106 4.91212 4.95131 5.07720 5.12581 5.44058 5.46426 5.53630 5.65634 5.72468 6.00248 6.45911 6.63869 7.27308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.592 5.592 3 C -0.163 4.163 4 Si 0.993 3.007 5 C -0.447 4.447 6 C -0.448 4.448 7 C -0.436 4.436 8 C 0.405 3.595 9 C -0.243 4.243 10 C -0.002 4.002 11 C -0.195 4.195 12 C -0.064 4.064 13 O -0.547 6.547 14 Si 0.936 3.064 15 H -0.255 1.255 16 H -0.246 1.246 17 H -0.248 1.248 18 C 0.151 3.849 19 N -0.531 5.531 20 H 0.053 0.947 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.378 0.622 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.606 -0.584 0.786 1.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.304 5.304 3 C -0.332 4.332 4 Si 1.188 2.812 5 C -0.554 4.554 6 C -0.556 4.556 7 C -0.544 4.544 8 C 0.171 3.829 9 C -0.268 4.268 10 C -0.028 4.028 11 C -0.200 4.200 12 C -0.176 4.176 13 O -0.352 6.352 14 Si 0.759 3.241 15 H -0.179 1.179 16 H -0.169 1.169 17 H -0.172 1.172 18 C -0.007 4.007 19 N -0.248 5.248 20 H 0.072 0.928 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.225 0.775 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.825 1.133 0.920 1.677 hybrid contribution -0.572 -1.409 0.020 1.520 sum -1.397 -0.276 0.940 1.707 Atomic orbital electron populations 1.21842 0.78426 1.03459 1.01905 1.45931 1.04708 1.02235 1.77565 1.26454 1.00702 0.87449 1.18641 0.79708 0.67486 0.66974 0.66998 1.26147 1.16802 1.04359 1.08101 1.26087 1.08633 1.16333 1.04519 1.26020 1.09409 1.11832 1.07146 1.18307 0.88420 0.85830 0.90386 1.21469 1.01178 0.91691 1.12462 1.21120 0.92886 0.97965 0.90791 1.19879 0.94803 0.94258 1.11096 1.24442 1.09828 0.94358 0.88943 1.86519 1.74796 1.40883 1.33041 0.85907 0.75314 0.81441 0.81481 1.17944 1.16900 1.17158 1.22173 0.99005 0.86774 0.92786 1.67122 1.06270 1.30662 1.20725 0.92829 0.90394 0.90815 0.90603 0.88667 0.91387 0.91253 0.91318 0.91060 0.91158 0.91295 0.91893 0.91913 0.90951 0.84763 0.84775 0.90946 0.77477 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.15 10.04 59.85 0.60 0.46 16 2 N -0.59 -0.45 2.48 -119.31 -0.30 -0.75 16 3 C -0.16 0.01 4.68 59.85 0.28 0.29 16 4 Si 0.99 -1.06 12.43 -169.99 -2.11 -3.18 16 5 C -0.45 0.41 7.97 101.05 0.81 1.21 16 6 C -0.45 0.29 8.65 101.05 0.87 1.16 16 7 C -0.44 -0.64 8.51 101.05 0.86 0.22 16 8 C 0.41 1.07 6.96 -155.01 -1.08 0.00 16 9 C -0.24 -0.40 9.27 -39.22 -0.36 -0.76 16 10 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 11 C -0.20 -0.43 5.39 -104.47 -0.56 -1.00 16 12 C -0.06 -0.01 2.81 36.00 0.10 0.09 16 13 O -0.55 -0.32 12.82 -35.23 -0.45 -0.77 16 14 Si 0.94 -0.10 25.17 -169.99 -4.28 -4.38 16 15 H -0.26 0.03 7.11 56.52 0.40 0.43 16 16 H -0.25 -0.31 7.04 56.52 0.40 0.08 16 17 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 18 C 0.15 0.45 9.84 -17.57 -0.17 0.28 16 19 N -0.53 -1.96 8.94 -12.44 -0.11 -2.07 16 20 H 0.05 -0.10 8.14 -51.93 -0.42 -0.53 16 21 H 0.08 -0.23 6.82 -51.93 -0.35 -0.58 16 22 H 0.07 -0.19 5.98 -51.93 -0.31 -0.50 16 23 H 0.08 -0.11 7.89 -51.93 -0.41 -0.52 16 24 H 0.09 0.11 7.12 -51.93 -0.37 -0.26 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 27 H 0.07 -0.05 7.46 -51.93 -0.39 -0.43 16 28 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 29 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 30 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 31 H 0.06 0.19 7.79 -51.93 -0.40 -0.22 16 32 H 0.06 0.07 7.96 -51.93 -0.41 -0.34 16 33 H 0.07 0.16 7.96 -51.93 -0.41 -0.25 16 34 H 0.13 -0.07 6.02 -52.49 -0.32 -0.39 16 35 H 0.13 0.01 8.06 -52.48 -0.42 -0.41 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 37 H 0.38 -1.44 8.74 45.56 0.40 -1.04 16 38 H 0.15 0.23 4.87 -52.49 -0.26 -0.03 16 LS Contribution 309.66 15.07 4.67 4.67 Total: 0.00 -5.50 309.66 -6.99 -12.49 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: -5.36 Total: -7.59 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 0.96 Total: 1.57 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -0.41 Total: -2.81 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -0.45 Total: -0.77 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -6.39 Total: -7.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -5.50 -6.99 -12.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.971 kcal (2) G-P(sol) polarization free energy of solvation -5.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds