Wall clock time and date at job start Mon Mar 8 2021 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99981 * 2 1 4 4 Si 1.86296 * 109.46983 * 270.00079 * 3 2 1 5 5 C 1.86308 * 109.47219 * 60.00335 * 4 3 2 6 6 C 1.86301 * 109.47130 * 180.02562 * 4 3 2 7 7 C 1.86296 * 109.47565 * 300.00261 * 4 3 2 8 8 C 1.39006 * 120.00117 * 180.02562 * 2 1 3 9 9 C 1.39096 * 119.70129 * 4.97627 * 8 2 1 10 10 C 1.38344 * 119.09689 * 180.02562 * 9 8 2 11 11 C 1.38835 * 118.50821 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.33739 * 179.97438 * 11 10 9 13 13 O 1.42894 * 109.47473 * 65.02139 * 12 11 10 14 14 Si 1.86305 * 109.46873 * 185.02133 * 12 11 10 15 15 H 1.48504 * 109.46887 * 179.97438 * 14 12 11 16 16 H 1.48505 * 109.47194 * 299.99615 * 14 12 11 17 17 H 1.48500 * 109.47258 * 60.00026 * 14 12 11 18 18 C 1.38068 * 119.32537 * 359.97438 * 11 10 9 19 19 N 1.31944 * 120.85569 * 0.02562 * 18 11 10 20 20 H 1.09003 * 109.46527 * 270.00032 * 1 2 3 21 21 H 1.09000 * 109.46868 * 29.99634 * 1 2 3 22 22 H 1.08991 * 109.47280 * 149.99792 * 1 2 3 23 23 H 1.08994 * 109.47024 * 30.00712 * 3 2 1 24 24 H 1.09002 * 109.46986 * 150.00216 * 3 2 1 25 25 H 1.09003 * 109.46644 * 59.99892 * 5 4 3 26 26 H 1.08996 * 109.46963 * 179.97438 * 5 4 3 27 27 H 1.08995 * 109.46979 * 299.99715 * 5 4 3 28 28 H 1.09002 * 109.47039 * 60.00014 * 6 4 3 29 29 H 1.08996 * 109.47549 * 179.97438 * 6 4 3 30 30 H 1.09003 * 109.46917 * 300.00353 * 6 4 3 31 31 H 1.08999 * 109.47549 * 59.99725 * 7 4 3 32 32 H 1.08996 * 109.47402 * 180.02562 * 7 4 3 33 33 H 1.09002 * 109.46867 * 300.00146 * 7 4 3 34 34 H 1.07996 * 120.45333 * 0.02562 * 9 8 2 35 35 H 1.08004 * 120.74536 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47170 * 305.01872 * 12 11 10 37 37 H 0.96698 * 114.00591 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.57504 * 180.02562 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 14 2.5080 1.8066 -1.7564 5 6 0.8801 2.0294 -2.6347 6 6 3.4402 3.4196 -1.7565 7 6 3.5147 0.5083 -2.6348 8 6 2.1601 -1.2038 -0.0005 9 6 1.4623 -2.4025 -0.1059 10 6 2.1665 -3.5932 -0.1046 11 6 3.5499 -3.5448 0.0018 12 6 4.3579 -4.8168 0.0080 13 8 4.2267 -5.4706 -1.2559 14 14 6.1504 -4.4124 0.3149 15 1 6.9465 -5.6660 0.3216 16 1 6.6467 -3.5160 -0.7600 17 1 6.2868 -3.7331 1.6283 18 6 4.1779 -2.3193 0.1020 19 7 3.4806 -1.1992 0.0981 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 1.6085 2.0284 0.5139 24 1 3.1500 1.1384 0.5138 25 1 0.2911 2.7891 -2.1207 26 1 1.0617 2.3445 -3.6621 27 1 0.3351 1.0855 -2.6347 28 1 4.3926 3.2888 -1.2428 29 1 3.6222 3.7340 -2.7841 30 1 2.8515 4.1794 -1.2424 31 1 2.9698 -0.4357 -2.6348 32 1 3.6967 0.8231 -3.6623 33 1 4.4672 0.3779 -2.1210 34 1 0.3854 -2.4036 -0.1875 35 1 1.6518 -4.5393 -0.1854 36 1 3.9936 -5.4748 0.7969 37 1 4.7213 -6.2987 -1.3236 38 1 5.2540 -2.2769 0.1845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13068046_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:40:29 Heat of formation + Delta-G solvation = -16.405212 kcal Electronic energy + Delta-G solvation = -17381.330075 eV Core-core repulsion = 14769.003339 eV Total energy + Delta-G solvation = -2612.326736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.36507 -38.21534 -37.01315 -33.50276 -32.07622 -29.58200 -28.98202 -28.37523 -28.19162 -27.31125 -24.85682 -23.94077 -21.86947 -18.53890 -18.45558 -17.74567 -16.55523 -16.27465 -16.00563 -15.60455 -15.11394 -14.54361 -14.26624 -14.24207 -14.12805 -13.93387 -13.81601 -13.79570 -13.71483 -13.29791 -13.22398 -13.03466 -12.82967 -12.79156 -12.31260 -12.07120 -11.89403 -11.77968 -10.82928 -10.75576 -10.73302 -10.48298 -10.40133 -10.09951 -8.22726 0.24652 0.46495 1.19126 1.44185 1.50026 1.72493 1.87555 1.91451 1.98212 2.23946 2.68278 2.87541 3.49244 3.59584 3.89858 4.04283 4.14494 4.26753 4.41225 4.52093 4.53025 4.67033 4.73038 4.75874 4.79797 4.81022 4.81215 4.83451 4.84025 4.94425 5.03545 5.11158 5.36392 5.50439 5.57926 5.60007 5.62199 6.02614 6.40018 6.86933 7.16642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.594 5.594 3 C -0.175 4.175 4 Si 1.053 2.947 5 C -0.449 4.449 6 C -0.456 4.456 7 C -0.454 4.454 8 C 0.389 3.611 9 C -0.247 4.247 10 C -0.010 4.010 11 C -0.207 4.207 12 C -0.060 4.060 13 O -0.564 6.564 14 Si 0.964 3.036 15 H -0.249 1.249 16 H -0.273 1.273 17 H -0.260 1.260 18 C 0.130 3.870 19 N -0.553 5.553 20 H 0.058 0.942 21 H 0.094 0.906 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -0.572 0.905 3.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.306 5.306 3 C -0.343 4.343 4 Si 1.245 2.755 5 C -0.557 4.557 6 C -0.564 4.564 7 C -0.558 4.558 8 C 0.153 3.847 9 C -0.272 4.272 10 C -0.036 4.036 11 C -0.212 4.212 12 C -0.172 4.172 13 O -0.373 6.373 14 Si 0.789 3.211 15 H -0.173 1.173 16 H -0.198 1.198 17 H -0.185 1.185 18 C -0.028 4.028 19 N -0.270 5.270 20 H 0.076 0.924 21 H 0.112 0.888 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.113 0.887 37 H 0.247 0.753 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.093 1.105 1.038 2.585 hybrid contribution -0.143 -1.401 -0.036 1.409 sum -2.236 -0.296 1.003 2.468 Atomic orbital electron populations 1.22052 0.76960 1.04722 1.02574 1.46137 1.05631 1.01813 1.77019 1.26639 1.00381 0.87681 1.19633 0.78807 0.66508 0.64918 0.65300 1.26160 1.16696 1.04808 1.08073 1.26177 1.08692 1.16943 1.04580 1.26328 1.09318 1.12501 1.07682 1.18612 0.88345 0.86989 0.90715 1.21747 1.02263 0.91352 1.11805 1.21395 0.92838 0.98783 0.90558 1.20141 0.95493 0.94753 1.10837 1.24410 1.09268 0.94024 0.89454 1.86468 1.75406 1.42163 1.33270 0.85512 0.75328 0.80600 0.79627 1.17318 1.19847 1.18463 1.22354 0.99346 0.87354 0.93737 1.67091 1.07156 1.31191 1.21595 0.92396 0.88797 0.89961 0.88847 0.90337 0.90112 0.91417 0.91304 0.91536 0.91200 0.90314 0.93636 0.91943 0.92443 0.82710 0.83123 0.88730 0.75348 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.34 10.04 127.77 1.28 0.94 16 2 N -0.59 -0.99 2.48 -531.37 -1.32 -2.31 16 3 C -0.17 -0.02 4.68 127.77 0.60 0.58 16 4 Si 1.05 -2.06 12.43 68.60 0.85 -1.20 16 5 C -0.45 1.30 7.97 113.37 0.90 2.20 16 6 C -0.46 0.64 8.65 113.37 0.98 1.62 16 7 C -0.45 -2.17 8.51 113.37 0.97 -1.21 16 8 C 0.39 2.42 6.96 133.05 0.93 3.35 16 9 C -0.25 -0.86 9.27 22.50 0.21 -0.65 16 10 C -0.01 -0.04 9.83 22.44 0.22 0.18 16 11 C -0.21 -1.11 5.39 -19.76 -0.11 -1.22 16 12 C -0.06 -0.02 2.81 71.23 0.20 0.18 16 13 O -0.56 -0.60 12.82 -148.98 -1.91 -2.51 16 14 Si 0.96 0.72 25.17 68.60 1.73 2.44 16 15 H -0.25 0.11 7.11 99.48 0.71 0.82 16 16 H -0.27 -1.36 7.04 99.48 0.70 -0.66 16 17 H -0.26 -0.64 7.11 99.48 0.71 0.06 16 18 C 0.13 1.05 9.84 84.64 0.83 1.88 16 19 N -0.55 -5.15 8.94 -193.26 -1.73 -6.88 16 20 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 21 H 0.09 -0.71 6.82 -2.39 -0.02 -0.72 16 22 H 0.08 -0.50 5.98 -2.39 -0.01 -0.52 16 23 H 0.09 -0.35 7.89 -2.39 -0.02 -0.37 16 24 H 0.08 0.30 7.12 -2.39 -0.02 0.28 16 25 H 0.08 -0.41 7.96 -2.39 -0.02 -0.42 16 26 H 0.07 -0.14 7.96 -2.39 -0.02 -0.15 16 27 H 0.07 -0.17 7.46 -2.39 -0.02 -0.19 16 28 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 29 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 30 H 0.08 -0.25 7.96 -2.39 -0.02 -0.26 16 31 H 0.04 0.37 7.79 -2.39 -0.02 0.35 16 32 H 0.06 0.25 7.96 -2.39 -0.02 0.23 16 33 H 0.06 0.42 7.96 -2.39 -0.02 0.40 16 34 H 0.16 -0.28 6.02 -2.91 -0.02 -0.30 16 35 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 36 H 0.09 -0.39 7.96 -2.39 -0.02 -0.41 16 37 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 38 H 0.15 0.88 4.87 -2.91 -0.01 0.86 16 Total: 0.00 -13.78 309.66 5.78 -8.00 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: 1.14 Total: -5.40 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 7.01 Total: 7.85 kcal Atomic # 7 Polarization: -6.15 SS G_CDS: -3.04 Total: -9.19 kcal Atomic # 8 Polarization: -0.60 SS G_CDS: -1.91 Total: -2.51 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.58 Total: 1.24 kcal Total: -13.78 5.78 -8.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.404 kcal (2) G-P(sol) polarization free energy of solvation -13.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds