Wall clock time and date at job start Mon Mar 8 2021 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00352 * 2 1 4 4 Si 1.86304 * 109.47129 * 270.00492 * 3 2 1 5 5 C 1.86293 * 109.47060 * 59.99710 * 4 3 2 6 6 C 1.86301 * 109.46953 * 180.02562 * 4 3 2 7 7 C 1.86307 * 109.46854 * 299.99864 * 4 3 2 8 8 C 1.38616 * 119.99433 * 180.02562 * 2 1 3 9 9 N 1.29686 * 124.94711 * 179.97438 * 8 2 1 10 10 C 1.32115 * 116.86551 * 180.02562 * 9 8 2 11 11 C 1.33323 * 114.58482 * 359.97438 * 10 9 8 12 12 C 1.50696 * 125.95935 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47389 * 120.02057 * 12 11 10 14 14 Si 1.86301 * 109.46719 * 0.02562 * 12 11 10 15 15 H 1.48506 * 109.47302 * 179.97438 * 14 12 11 16 16 H 1.48503 * 109.47334 * 60.00029 * 14 12 11 17 17 H 1.48500 * 109.47376 * 300.00026 * 14 12 11 18 18 S 1.70967 * 124.95027 * 0.32340 * 8 2 1 19 19 H 1.09003 * 109.46797 * 270.00353 * 1 2 3 20 20 H 1.08996 * 109.46911 * 29.99275 * 1 2 3 21 21 H 1.08995 * 109.47916 * 150.00163 * 1 2 3 22 22 H 1.09003 * 109.46911 * 30.00437 * 3 2 1 23 23 H 1.08998 * 109.47306 * 150.00403 * 3 2 1 24 24 H 1.09001 * 109.47564 * 60.00141 * 5 4 3 25 25 H 1.09006 * 109.47263 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.47577 * 300.00309 * 5 4 3 27 27 H 1.09000 * 109.46927 * 60.00143 * 6 4 3 28 28 H 1.09003 * 109.46583 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46989 * 299.99885 * 6 4 3 30 30 H 1.09003 * 109.46902 * 60.00230 * 7 4 3 31 31 H 1.08999 * 109.46660 * 180.02562 * 7 4 3 32 32 H 1.08993 * 109.46968 * 300.00270 * 7 4 3 33 33 H 1.08004 * 122.70742 * 180.02562 * 10 9 8 34 34 H 1.09001 * 109.47332 * 240.02694 * 12 11 10 35 35 H 0.96699 * 113.99816 * 300.00301 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 14 2.5080 1.8065 -1.7565 5 6 0.8802 2.0293 -2.6346 6 6 3.4403 3.4195 -1.7564 7 6 3.5148 0.5081 -2.6348 8 6 2.1580 -1.2005 -0.0005 9 7 3.4500 -1.3125 -0.0011 10 6 3.9430 -2.5382 -0.0021 11 6 3.0253 -3.5052 -0.0018 12 6 3.3009 -4.9868 -0.0022 13 8 2.7258 -5.5787 1.1644 14 14 5.1413 -5.2759 -0.0023 15 1 5.4131 -6.7359 -0.0021 16 1 5.7390 -4.6616 1.2104 17 1 5.7390 -4.6609 -1.2146 18 16 1.4340 -2.7493 -0.0091 19 1 -0.3633 0.0001 1.0277 20 1 -0.3633 0.8900 -0.5137 21 1 -0.3635 -0.8899 -0.5138 22 1 1.6085 2.0283 0.5139 23 1 3.1500 1.1383 0.5138 24 1 0.2911 2.7890 -2.1207 25 1 1.0617 2.3445 -3.6622 26 1 0.3350 1.0854 -2.6346 27 1 4.3927 3.2886 -1.2428 28 1 3.6223 3.7339 -2.7842 29 1 2.8516 4.1794 -1.2424 30 1 2.9697 -0.4359 -2.6348 31 1 3.6967 0.8230 -3.6623 32 1 4.4671 0.3777 -2.1210 33 1 5.0040 -2.7405 -0.0022 34 1 2.8622 -5.4378 -0.8924 35 1 3.0704 -5.2245 1.9956 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13068046_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:40:37 Heat of formation + Delta-G solvation = -19.763046 kcal Electronic energy + Delta-G solvation = -15975.007217 eV Core-core repulsion = 13451.687121 eV Total energy + Delta-G solvation = -2523.320096 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67376 -38.24657 -37.21636 -31.75301 -29.71903 -29.15280 -28.40007 -28.34024 -27.72536 -25.26494 -23.61393 -20.46215 -19.57257 -17.70004 -17.28641 -16.73808 -16.08406 -15.98657 -15.70948 -15.16069 -14.48628 -14.27309 -14.16649 -14.08097 -13.97127 -13.81883 -13.66439 -13.29744 -13.20338 -13.06572 -12.96636 -12.78054 -12.29429 -12.08570 -11.98352 -11.82361 -10.92949 -10.79585 -10.61104 -10.34798 -10.31961 -9.99312 -8.33551 0.04519 0.17896 0.80081 1.37564 1.46405 1.52923 1.59011 1.72421 1.84412 1.94957 2.03878 2.13109 2.59885 3.48159 3.62498 3.94820 4.04978 4.23048 4.27495 4.49369 4.54194 4.63802 4.65003 4.69288 4.70698 4.71052 4.83958 4.90117 4.94315 5.12776 5.39464 5.47696 5.64019 5.69576 6.01617 6.55005 7.03282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.563 5.563 3 C -0.161 4.161 4 Si 0.994 3.006 5 C -0.448 4.448 6 C -0.447 4.447 7 C -0.434 4.434 8 C 0.313 3.687 9 N -0.545 5.545 10 C 0.092 3.908 11 C -0.310 4.310 12 C -0.035 4.035 13 O -0.540 6.540 14 Si 0.957 3.043 15 H -0.249 1.249 16 H -0.249 1.249 17 H -0.247 1.247 18 S 0.120 5.880 19 H 0.062 0.938 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.116 0.884 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 2.005 -0.184 2.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.281 5.281 3 C -0.332 4.332 4 Si 1.190 2.810 5 C -0.555 4.555 6 C -0.556 4.556 7 C -0.543 4.543 8 C -0.056 4.056 9 N -0.271 5.271 10 C -0.060 4.060 11 C -0.434 4.434 12 C -0.148 4.148 13 O -0.345 6.345 14 Si 0.777 3.223 15 H -0.173 1.173 16 H -0.172 1.172 17 H -0.171 1.171 18 S 0.370 5.630 19 H 0.080 0.920 20 H 0.106 0.894 21 H 0.090 0.910 22 H 0.100 0.900 23 H 0.113 0.887 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.184 0.816 34 H 0.134 0.866 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.871 1.817 -0.597 2.676 hybrid contribution 0.693 0.355 0.429 0.889 sum -1.177 2.173 -0.168 2.477 Atomic orbital electron populations 1.21958 0.77368 1.03932 1.02687 1.45512 1.04681 1.00904 1.76998 1.26595 1.00568 0.86676 1.19342 0.79690 0.67639 0.67182 0.66475 1.26156 1.16692 1.04403 1.08261 1.26079 1.08635 1.16198 1.04648 1.25998 1.09514 1.11651 1.07089 1.23663 0.91643 0.91957 0.98385 1.66374 1.08862 1.24672 1.27156 1.21278 1.00314 0.85658 0.98730 1.25881 0.94671 1.00902 1.21930 1.24310 1.11547 0.87208 0.91715 1.86509 1.68224 1.64350 1.15401 0.85632 0.73023 0.81530 0.82088 1.17266 1.17188 1.17092 1.84036 1.09223 0.96334 1.73409 0.91966 0.89350 0.90991 0.89953 0.88702 0.91280 0.91077 0.91332 0.91019 0.91031 0.91235 0.91931 0.91910 0.90766 0.81569 0.86606 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.19 10.17 59.85 0.61 0.41 16 2 N -0.56 0.01 2.47 -121.35 -0.30 -0.29 16 3 C -0.16 0.16 4.74 59.84 0.28 0.45 16 4 Si 0.99 -1.92 12.43 -169.99 -2.11 -4.03 16 5 C -0.45 0.80 7.97 101.05 0.80 1.60 16 6 C -0.45 0.61 8.65 101.05 0.87 1.49 16 7 C -0.43 -0.26 8.41 101.05 0.85 0.59 16 8 C 0.31 0.61 7.32 -87.68 -0.64 -0.03 16 9 N -0.55 -1.67 9.57 -15.21 -0.15 -1.82 16 10 C 0.09 0.19 10.07 -19.15 -0.19 0.00 16 11 C -0.31 -0.46 5.93 -36.03 -0.21 -0.68 16 12 C -0.04 -0.01 3.08 36.00 0.11 0.10 16 13 O -0.54 -0.46 12.88 -35.23 -0.45 -0.92 16 14 Si 0.96 -0.41 25.77 -169.99 -4.38 -4.79 16 15 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 16 H -0.25 0.05 7.11 56.52 0.40 0.45 16 17 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 18 S 0.12 0.16 21.68 -107.50 -2.33 -2.17 16 19 H 0.06 -0.17 8.14 -51.93 -0.42 -0.60 16 20 H 0.09 -0.35 6.82 -51.93 -0.35 -0.71 16 21 H 0.07 -0.19 7.04 -51.93 -0.37 -0.55 16 22 H 0.08 -0.22 7.89 -51.93 -0.41 -0.63 16 23 H 0.09 0.03 7.44 -51.93 -0.39 -0.35 16 24 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.11 7.46 -51.93 -0.39 -0.50 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.06 0.12 7.79 -51.93 -0.40 -0.28 16 31 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 32 H 0.07 0.12 7.96 -51.93 -0.41 -0.30 16 33 H 0.17 0.08 5.85 -52.48 -0.31 -0.23 16 34 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 35 H 0.38 -0.82 8.70 45.56 0.40 -0.42 16 LS Contribution 303.30 15.07 4.57 4.57 Total: 0.00 -5.09 303.30 -7.41 -12.50 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -4.74 Total: -6.99 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 2.48 Total: 3.94 kcal Atomic # 7 Polarization: -1.66 SS G_CDS: -0.44 Total: -2.11 kcal Atomic # 8 Polarization: -0.46 SS G_CDS: -0.45 Total: -0.92 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: -6.49 Total: -8.83 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.33 Total: -2.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -5.09 -7.41 -12.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.259 kcal (2) G-P(sol) polarization free energy of solvation -5.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds