Wall clock time and date at job start Mon Mar 8 2021 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33324 * 125.95110 * 2 1 4 4 C 1.50704 * 122.71138 * 0.02657 * 3 2 1 5 5 O 1.42900 * 109.46805 * 330.00069 * 4 3 2 6 6 Si 1.86305 * 109.47145 * 209.99906 * 4 3 2 7 7 H 1.48500 * 109.46692 * 60.00186 * 6 4 3 8 8 H 1.48497 * 109.47088 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47149 * 300.00220 * 6 4 3 10 10 N 1.32121 * 114.57957 * 180.02562 * 3 2 1 11 11 C 1.29686 * 116.86367 * 359.97438 * 10 3 2 12 12 N 1.38617 * 124.94665 * 179.97438 * 11 10 3 13 13 C 1.46504 * 119.99870 * 0.02562 * 12 11 10 14 14 C 1.46499 * 119.99749 * 180.02562 * 12 11 10 15 15 Si 1.86304 * 109.46839 * 90.00198 * 14 12 11 16 16 C 1.86294 * 109.47109 * 299.99457 * 15 14 12 17 17 C 1.86300 * 109.47277 * 60.00105 * 15 14 12 18 18 C 1.86301 * 109.46996 * 179.97438 * 15 14 12 19 19 S 1.70961 * 110.10453 * 0.24639 * 11 10 3 20 20 H 1.09000 * 109.47304 * 89.99536 * 1 2 3 21 21 H 1.08999 * 109.47126 * 209.99921 * 1 2 3 22 22 H 1.09001 * 109.46820 * 329.99815 * 1 2 3 23 23 H 1.08997 * 109.47105 * 89.99762 * 4 3 2 24 24 H 0.96703 * 114.00031 * 299.99229 * 5 4 3 25 25 H 1.09000 * 109.46899 * 269.99589 * 13 12 11 26 26 H 1.08992 * 109.47334 * 29.99553 * 13 12 11 27 27 H 1.08994 * 109.46680 * 150.00177 * 13 12 11 28 28 H 1.09002 * 109.47391 * 330.00012 * 14 12 11 29 29 H 1.09001 * 109.46813 * 210.00068 * 14 12 11 30 30 H 1.09000 * 109.47014 * 60.00264 * 16 15 14 31 31 H 1.08996 * 109.47165 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.47811 * 300.00281 * 16 15 14 33 33 H 1.08998 * 109.46897 * 59.99505 * 17 15 14 34 34 H 1.08993 * 109.46832 * 180.02562 * 17 15 14 35 35 H 1.09000 * 109.46785 * 299.99699 * 17 15 14 36 36 H 1.09002 * 109.47148 * 59.99866 * 18 15 14 37 37 H 1.08988 * 109.47482 * 179.97438 * 18 15 14 38 38 H 1.08998 * 109.47144 * 300.00473 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5023 -0.6726 6 14 2.9321 3.6152 -0.8778 7 1 3.1116 3.1545 -2.2780 8 1 2.3914 4.9983 -0.8777 9 1 4.2418 3.5951 -0.1783 10 7 3.5851 0.8188 -0.0005 11 6 3.9315 -0.4310 -0.0005 12 7 5.2385 -0.8926 -0.0015 13 6 6.3517 0.0597 -0.0022 14 6 5.5065 -2.3329 -0.0019 15 14 5.6189 -2.9431 -1.7585 16 6 4.0092 -2.6109 -2.6355 17 6 7.0001 -2.0542 -2.6376 18 6 5.9606 -4.7745 -1.7591 19 16 2.5413 -1.4261 -0.0066 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6096 2.8211 1.0284 24 1 0.5230 2.2127 -1.5943 25 1 6.6271 0.2960 -1.0300 26 1 6.0497 0.9721 0.5119 27 1 7.2067 -0.3805 0.5109 28 1 4.6984 -2.8531 0.5125 29 1 6.4484 -2.5273 0.5113 30 1 3.8097 -1.5393 -2.6352 31 1 4.0751 -2.9675 -3.6634 32 1 3.2011 -3.1310 -2.1212 33 1 7.9419 -2.2486 -2.1244 34 1 7.0655 -2.4109 -3.6654 35 1 6.8006 -0.9826 -2.6373 36 1 5.1528 -5.2950 -1.2446 37 1 6.0259 -5.1317 -2.7867 38 1 6.9025 -4.9686 -1.2460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13068046_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:40:43 Heat of formation + Delta-G solvation = -25.136090 kcal Electronic energy + Delta-G solvation = -18027.709230 eV Core-core repulsion = 15348.618522 eV Total energy + Delta-G solvation = -2679.090708 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 274.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96631 -38.41113 -36.96681 -32.78238 -29.85460 -29.54813 -29.23354 -28.55267 -28.33971 -26.57908 -25.36498 -22.84911 -20.09067 -19.09686 -17.97630 -17.15710 -16.81831 -16.03859 -15.85260 -15.66320 -14.72490 -14.63066 -14.37604 -14.34096 -14.11388 -13.85219 -13.72898 -13.68418 -13.65003 -13.40996 -13.24928 -13.18021 -13.09698 -13.00635 -12.62832 -12.22958 -11.99019 -11.88340 -11.69619 -11.01845 -10.95763 -10.59593 -10.33397 -10.13571 -9.78841 -8.24686 0.11951 0.25744 0.89759 1.29994 1.41519 1.59386 1.67446 1.68217 1.78994 1.97789 2.06008 2.26077 2.44529 3.37685 3.55303 3.92356 4.24568 4.29591 4.45447 4.47280 4.54753 4.58990 4.60661 4.64415 4.65173 4.68123 4.71331 4.74235 4.84668 4.86247 4.95852 5.22664 5.34814 5.39707 5.43438 5.50148 5.69109 6.03863 6.52118 7.05276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.243 4.243 3 C 0.066 3.934 4 C -0.046 4.046 5 O -0.535 6.535 6 Si 0.981 3.019 7 H -0.260 1.260 8 H -0.263 1.263 9 H -0.246 1.246 10 N -0.550 5.550 11 C 0.318 3.682 12 N -0.565 5.565 13 C 0.096 3.904 14 C -0.171 4.171 15 Si 0.984 3.016 16 C -0.445 4.445 17 C -0.444 4.444 18 C -0.446 4.446 19 S 0.095 5.905 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.092 0.908 23 H 0.123 0.877 24 H 0.376 0.624 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -2.885 -0.749 3.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.366 4.366 3 C -0.065 4.065 4 C -0.159 4.159 5 O -0.339 6.339 6 Si 0.803 3.197 7 H -0.184 1.184 8 H -0.187 1.187 9 H -0.169 1.169 10 N -0.277 5.277 11 C -0.051 4.051 12 N -0.284 5.284 13 C -0.049 4.049 14 C -0.340 4.340 15 Si 1.180 2.820 16 C -0.554 4.554 17 C -0.552 4.552 18 C -0.555 4.555 19 S 0.347 5.653 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.111 0.889 23 H 0.141 0.859 24 H 0.224 0.776 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.420 -2.880 -0.545 3.801 hybrid contribution -0.200 0.168 -0.113 0.284 sum 2.220 -2.712 -0.657 3.566 Atomic orbital electron populations 1.20201 0.86496 1.03130 1.02571 1.25103 1.01238 0.92774 1.17475 1.20117 0.86842 0.97144 1.02374 1.24447 0.92514 0.95382 1.03561 1.86511 1.28844 1.89639 1.28916 0.85171 0.78142 0.76847 0.79573 1.18419 1.18743 1.16915 1.65922 1.17093 1.16677 1.28030 1.23222 0.91106 0.91595 0.99214 1.45427 1.00147 1.05246 1.77545 1.21795 0.87632 0.93267 1.02163 1.26795 1.05404 0.82048 1.19746 0.79868 0.68699 0.67304 0.66133 1.26179 1.16002 1.05096 1.08075 1.26089 1.12826 1.08169 1.08097 1.26056 1.05175 1.19317 1.04917 1.83919 0.96580 1.10776 1.74072 0.91286 0.92376 0.88939 0.85908 0.77643 0.92402 0.90250 0.91012 0.89935 0.88589 0.91415 0.90947 0.90711 0.91153 0.91025 0.91110 0.90973 0.90772 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.02 8.95 36.01 0.32 0.30 16 2 C -0.24 -0.52 6.50 -36.02 -0.23 -0.75 16 3 C 0.07 0.19 5.92 -84.18 -0.50 -0.31 16 4 C -0.05 -0.06 2.83 36.01 0.10 0.04 16 5 O -0.53 -0.24 9.89 -35.23 -0.35 -0.59 16 6 Si 0.98 1.75 27.37 -169.99 -4.65 -2.90 16 7 H -0.26 -0.70 7.11 56.52 0.40 -0.30 16 8 H -0.26 -0.63 7.11 56.52 0.40 -0.23 16 9 H -0.25 -0.79 7.11 56.52 0.40 -0.38 16 10 N -0.55 -2.07 8.16 -11.36 -0.09 -2.16 16 11 C 0.32 0.78 7.33 -87.67 -0.64 0.14 16 12 N -0.56 -0.23 2.47 -121.36 -0.30 -0.52 16 13 C 0.10 -0.05 10.42 59.85 0.62 0.57 16 14 C -0.17 0.34 4.65 59.85 0.28 0.62 16 15 Si 0.98 -2.81 12.34 -169.99 -2.10 -4.91 16 16 C -0.45 0.45 7.48 101.05 0.76 1.21 16 17 C -0.44 0.84 8.65 101.05 0.87 1.71 16 18 C -0.45 1.14 8.65 101.05 0.87 2.01 16 19 S 0.10 0.13 19.48 -107.50 -2.09 -1.96 16 20 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 21 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 22 H 0.09 0.07 6.61 -51.93 -0.34 -0.28 16 23 H 0.12 0.06 7.96 -51.93 -0.41 -0.35 16 24 H 0.38 -0.83 8.68 45.56 0.40 -0.43 16 25 H 0.06 -0.06 6.86 -51.93 -0.36 -0.42 16 26 H 0.08 0.07 7.62 -51.93 -0.40 -0.32 16 27 H 0.07 -0.18 7.89 -51.93 -0.41 -0.59 16 28 H 0.08 -0.17 6.87 -51.93 -0.36 -0.52 16 29 H 0.10 -0.34 7.72 -51.93 -0.40 -0.74 16 30 H 0.07 0.04 7.60 -51.93 -0.39 -0.36 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.08 7.32 -51.93 -0.38 -0.46 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.08 6.69 -51.93 -0.35 -0.42 16 36 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.16 7.96 -51.94 -0.41 -0.58 16 38 H 0.07 -0.20 7.96 -51.93 -0.41 -0.61 16 LS Contribution 318.28 15.07 4.80 4.80 Total: 0.00 -4.97 318.28 -7.86 -12.82 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: -5.52 Total: -10.11 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 2.46 Total: 5.54 kcal Atomic # 7 Polarization: -2.29 SS G_CDS: -0.39 Total: -2.68 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.35 Total: -0.59 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -6.75 Total: -7.82 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.09 Total: -1.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -4.97 -7.86 -12.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.312 kcal (2) G-P(sol) polarization free energy of solvation -4.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds