Wall clock time and date at job start Mon Mar 8 2021 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33324 * 125.95110 * 2 1 4 4 C 1.50704 * 122.71138 * 0.02657 * 3 2 1 5 5 O 1.42900 * 109.46805 * 330.00069 * 4 3 2 6 6 Si 1.86305 * 109.47145 * 209.99906 * 4 3 2 7 7 H 1.48500 * 109.46692 * 60.00186 * 6 4 3 8 8 H 1.48497 * 109.47088 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47149 * 300.00220 * 6 4 3 10 10 N 1.32121 * 114.57957 * 180.02562 * 3 2 1 11 11 C 1.29686 * 116.86367 * 359.97438 * 10 3 2 12 12 N 1.38617 * 124.94665 * 179.97438 * 11 10 3 13 13 C 1.46504 * 119.99870 * 0.02562 * 12 11 10 14 14 C 1.46499 * 119.99749 * 180.02562 * 12 11 10 15 15 Si 1.86304 * 109.46839 * 90.00198 * 14 12 11 16 16 C 1.86294 * 109.47109 * 299.99457 * 15 14 12 17 17 C 1.86300 * 109.47277 * 60.00105 * 15 14 12 18 18 C 1.86301 * 109.46996 * 179.97438 * 15 14 12 19 19 S 1.70961 * 110.10453 * 0.24639 * 11 10 3 20 20 H 1.09000 * 109.47304 * 89.99536 * 1 2 3 21 21 H 1.08999 * 109.47126 * 209.99921 * 1 2 3 22 22 H 1.09001 * 109.46820 * 329.99815 * 1 2 3 23 23 H 1.08997 * 109.47105 * 89.99762 * 4 3 2 24 24 H 0.96703 * 114.00031 * 299.99229 * 5 4 3 25 25 H 1.09000 * 109.46899 * 269.99589 * 13 12 11 26 26 H 1.08992 * 109.47334 * 29.99553 * 13 12 11 27 27 H 1.08994 * 109.46680 * 150.00177 * 13 12 11 28 28 H 1.09002 * 109.47391 * 330.00012 * 14 12 11 29 29 H 1.09001 * 109.46813 * 210.00068 * 14 12 11 30 30 H 1.09000 * 109.47014 * 60.00264 * 16 15 14 31 31 H 1.08996 * 109.47165 * 179.97438 * 16 15 14 32 32 H 1.09002 * 109.47811 * 300.00281 * 16 15 14 33 33 H 1.08998 * 109.46897 * 59.99505 * 17 15 14 34 34 H 1.08993 * 109.46832 * 180.02562 * 17 15 14 35 35 H 1.09000 * 109.46785 * 299.99699 * 17 15 14 36 36 H 1.09002 * 109.47148 * 59.99866 * 18 15 14 37 37 H 1.08988 * 109.47482 * 179.97438 * 18 15 14 38 38 H 1.08998 * 109.47144 * 300.00473 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5023 -0.6726 6 14 2.9321 3.6152 -0.8778 7 1 3.1116 3.1545 -2.2780 8 1 2.3914 4.9983 -0.8777 9 1 4.2418 3.5951 -0.1783 10 7 3.5851 0.8188 -0.0005 11 6 3.9315 -0.4310 -0.0005 12 7 5.2385 -0.8926 -0.0015 13 6 6.3517 0.0597 -0.0022 14 6 5.5065 -2.3329 -0.0019 15 14 5.6189 -2.9431 -1.7585 16 6 4.0092 -2.6109 -2.6355 17 6 7.0001 -2.0542 -2.6376 18 6 5.9606 -4.7745 -1.7591 19 16 2.5413 -1.4261 -0.0066 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6096 2.8211 1.0284 24 1 0.5230 2.2127 -1.5943 25 1 6.6271 0.2960 -1.0300 26 1 6.0497 0.9721 0.5119 27 1 7.2067 -0.3805 0.5109 28 1 4.6984 -2.8531 0.5125 29 1 6.4484 -2.5273 0.5113 30 1 3.8097 -1.5393 -2.6352 31 1 4.0751 -2.9675 -3.6634 32 1 3.2011 -3.1310 -2.1212 33 1 7.9419 -2.2486 -2.1244 34 1 7.0655 -2.4109 -3.6654 35 1 6.8006 -0.9826 -2.6373 36 1 5.1528 -5.2950 -1.2446 37 1 6.0259 -5.1317 -2.7867 38 1 6.9025 -4.9686 -1.2460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13068046_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:40:43 Heat of formation + Delta-G solvation = -16.646657 kcal Electronic energy + Delta-G solvation = -18027.341101 eV Core-core repulsion = 15348.618522 eV Total energy + Delta-G solvation = -2678.722578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 274.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06830 -38.42922 -36.99677 -32.84184 -29.76138 -29.54941 -29.13188 -28.39986 -28.19386 -26.58181 -25.43304 -22.88450 -20.17014 -19.17273 -18.04912 -17.19984 -16.86020 -16.06167 -15.91293 -15.69845 -14.82416 -14.70228 -14.22582 -14.18213 -13.98635 -13.79181 -13.74012 -13.64611 -13.55823 -13.23075 -13.22105 -13.07156 -12.98671 -12.95516 -12.69730 -12.35863 -12.20818 -11.89256 -11.76042 -10.84894 -10.82138 -10.66357 -10.43360 -10.20055 -9.87289 -8.27592 0.00942 0.17239 0.78891 1.18105 1.47838 1.55122 1.59675 1.74802 1.84236 1.86169 2.08775 2.16304 2.60297 3.33970 3.53153 4.03945 4.24259 4.33105 4.41773 4.55481 4.59614 4.72453 4.73657 4.76811 4.79704 4.81402 4.85040 4.85321 4.88156 4.89247 4.95927 5.17236 5.37502 5.52418 5.59584 5.62313 5.74958 5.98892 6.59243 6.95985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.255 4.255 3 C 0.051 3.949 4 C -0.037 4.037 5 O -0.537 6.537 6 Si 1.010 2.990 7 H -0.275 1.275 8 H -0.270 1.270 9 H -0.270 1.270 10 N -0.577 5.577 11 C 0.305 3.695 12 N -0.564 5.564 13 C 0.092 3.908 14 C -0.187 4.187 15 Si 1.045 2.955 16 C -0.463 4.463 17 C -0.456 4.456 18 C -0.452 4.452 19 S 0.110 5.890 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.089 0.911 23 H 0.130 0.870 24 H 0.387 0.613 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -3.905 -0.526 4.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.378 4.378 3 C -0.079 4.079 4 C -0.151 4.151 5 O -0.343 6.343 6 Si 0.836 3.164 7 H -0.200 1.200 8 H -0.194 1.194 9 H -0.194 1.194 10 N -0.306 5.306 11 C -0.064 4.064 12 N -0.282 5.282 13 C -0.052 4.052 14 C -0.354 4.354 15 Si 1.238 2.762 16 C -0.569 4.569 17 C -0.563 4.563 18 C -0.561 4.561 19 S 0.361 5.639 20 H 0.098 0.902 21 H 0.080 0.920 22 H 0.108 0.892 23 H 0.148 0.852 24 H 0.236 0.764 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.135 0.865 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.619 -3.898 -0.340 4.708 hybrid contribution -0.219 0.462 -0.219 0.557 sum 2.400 -3.436 -0.559 4.228 Atomic orbital electron populations 1.20215 0.85401 1.03159 1.03255 1.25374 1.02111 0.92935 1.17361 1.20333 0.86845 0.97905 1.02821 1.24331 0.92427 0.94507 1.03841 1.86486 1.28281 1.89642 1.29886 0.84752 0.77003 0.76390 0.78282 1.20021 1.19449 1.19423 1.65939 1.17735 1.17589 1.29335 1.23519 0.92167 0.91649 0.99097 1.45688 0.99600 1.06307 1.76655 1.21880 0.88046 0.92841 1.02480 1.27102 1.06553 0.80669 1.21040 0.78943 0.66325 0.66566 0.64400 1.26426 1.17910 1.03843 1.08688 1.26242 1.13984 1.07731 1.08331 1.26111 1.05706 1.19262 1.04981 1.83741 0.95943 1.10224 1.73956 0.90229 0.91969 0.89213 0.85236 0.76354 0.92095 0.92037 0.88635 0.89696 0.86455 0.93172 0.90936 0.90705 0.90292 0.91304 0.92067 0.90698 0.90955 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.04 8.95 71.24 0.64 0.60 16 2 C -0.25 -1.20 6.50 24.58 0.16 -1.04 16 3 C 0.05 0.33 5.92 41.40 0.25 0.58 16 4 C -0.04 -0.12 2.83 71.24 0.20 0.08 16 5 O -0.54 -0.54 9.89 -148.98 -1.47 -2.01 16 6 Si 1.01 4.94 27.37 68.60 1.88 6.82 16 7 H -0.28 -1.93 7.11 99.48 0.71 -1.23 16 8 H -0.27 -1.52 7.11 99.48 0.71 -0.81 16 9 H -0.27 -2.31 7.11 99.48 0.71 -1.60 16 10 N -0.58 -5.06 8.16 -189.86 -1.55 -6.61 16 11 C 0.31 1.72 7.33 179.32 1.31 3.04 16 12 N -0.56 -0.54 2.47 -537.86 -1.33 -1.86 16 13 C 0.09 -0.07 10.42 127.77 1.33 1.26 16 14 C -0.19 0.89 4.65 127.77 0.59 1.48 16 15 Si 1.05 -6.49 12.34 68.60 0.85 -5.65 16 16 C -0.46 0.69 7.48 113.37 0.85 1.54 16 17 C -0.46 1.84 8.65 113.37 0.98 2.82 16 18 C -0.45 2.83 8.65 113.37 0.98 3.81 16 19 S 0.11 0.35 19.48 -56.49 -1.10 -0.75 16 20 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 21 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 22 H 0.09 0.12 6.61 -2.39 -0.02 0.10 16 23 H 0.13 0.19 7.96 -2.39 -0.02 0.17 16 24 H 0.39 -1.65 8.68 -74.06 -0.64 -2.29 16 25 H 0.06 -0.09 6.86 -2.39 -0.02 -0.11 16 26 H 0.06 0.19 7.62 -2.39 -0.02 0.18 16 27 H 0.10 -0.56 7.89 -2.39 -0.02 -0.58 16 28 H 0.08 -0.41 6.87 -2.39 -0.02 -0.43 16 29 H 0.12 -1.05 7.72 -2.39 -0.02 -1.07 16 30 H 0.05 0.12 7.60 -2.39 -0.02 0.10 16 31 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 32 H 0.07 -0.13 7.32 -2.39 -0.02 -0.15 16 33 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 35 H 0.06 -0.11 6.69 -2.39 -0.02 -0.13 16 36 H 0.07 -0.48 7.96 -2.39 -0.02 -0.50 16 37 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 38 H 0.08 -0.57 7.96 -2.39 -0.02 -0.59 16 Total: 0.00 -12.00 318.28 5.72 -6.28 By element: Atomic # 1 Polarization: -11.55 SS G_CDS: 1.15 Total: -10.40 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 7.29 Total: 14.18 kcal Atomic # 7 Polarization: -5.60 SS G_CDS: -2.88 Total: -8.47 kcal Atomic # 8 Polarization: -0.54 SS G_CDS: -1.47 Total: -2.01 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.72 Total: 1.17 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.10 Total: -0.75 kcal Total: -12.00 5.72 -6.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.370 kcal (2) G-P(sol) polarization free energy of solvation -11.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds