Wall clock time and date at job start Mon Mar 8 2021 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46899 * 110.99996 * 2 1 4 4 Si 1.86309 * 109.46818 * 81.19453 * 3 2 1 5 5 C 1.86299 * 109.47036 * 52.11603 * 4 3 2 6 6 C 1.86303 * 109.46675 * 172.11592 * 4 3 2 7 7 C 1.86305 * 109.47021 * 292.11462 * 4 3 2 8 8 C 1.39147 * 110.99679 * 236.04970 * 2 1 3 9 9 C 1.39300 * 119.71613 * 303.95160 * 8 2 1 10 10 F 1.35108 * 120.47331 * 0.02562 * 9 8 2 11 11 C 1.38491 * 119.05964 * 180.02562 * 9 8 2 12 12 C 1.38862 * 118.48211 * 0.02562 * 11 9 8 13 13 C 1.50691 * 120.32716 * 179.97438 * 12 11 9 14 14 O 1.42907 * 109.47086 * 300.02250 * 13 12 11 15 15 Si 1.86298 * 109.47356 * 180.02562 * 13 12 11 16 16 H 1.48501 * 109.47186 * 59.99743 * 15 13 12 17 17 H 1.48503 * 109.47542 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47123 * 300.00178 * 15 13 12 19 19 C 1.38034 * 119.34312 * 359.97438 * 12 11 9 20 20 N 1.31974 * 120.90257 * 359.97438 * 19 12 11 21 21 H 1.08995 * 109.47430 * 191.12169 * 1 2 3 22 22 H 1.09002 * 109.46536 * 311.11628 * 1 2 3 23 23 H 1.08998 * 109.47264 * 71.11401 * 1 2 3 24 24 H 1.08995 * 109.47044 * 201.19168 * 3 2 1 25 25 H 1.08996 * 109.47277 * 321.19616 * 3 2 1 26 26 H 1.08991 * 109.47194 * 60.00169 * 5 4 3 27 27 H 1.09005 * 109.46715 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.46814 * 299.99869 * 5 4 3 29 29 H 1.08997 * 109.47409 * 60.00229 * 6 4 3 30 30 H 1.09010 * 109.46678 * 180.02562 * 6 4 3 31 31 H 1.08994 * 109.46915 * 299.99254 * 6 4 3 32 32 H 1.08993 * 109.46964 * 66.80385 * 7 4 3 33 33 H 1.08994 * 109.46669 * 186.81062 * 7 4 3 34 34 H 1.09003 * 109.46969 * 306.80425 * 7 4 3 35 35 H 1.07999 * 120.75608 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.47641 * 60.01823 * 13 12 11 37 37 H 0.96700 * 113.99719 * 180.02562 * 14 13 12 38 38 H 1.08005 * 119.54604 * 179.72688 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 14 1.9670 2.0475 1.7359 5 6 2.8207 0.8522 2.8819 6 6 2.8506 3.6871 1.7782 7 6 0.2013 2.2792 2.2831 8 6 1.9677 -0.7255 -1.0776 9 6 1.5843 -2.0532 -1.2528 10 9 0.7320 -2.6405 -0.3844 11 6 2.0892 -2.7627 -2.3296 12 6 2.9626 -2.1187 -3.1961 13 6 3.5372 -2.8514 -4.3808 14 8 4.2809 -3.9837 -3.9258 15 14 4.6627 -1.7103 -5.3305 16 1 5.7662 -1.2553 -4.4471 17 1 5.2296 -2.4325 -6.4978 18 1 3.8901 -0.5336 -5.8034 19 6 3.2992 -0.8008 -2.9613 20 7 2.8022 -0.1481 -1.9275 21 1 -0.3634 -1.0083 0.1982 22 1 -0.3632 0.6758 0.7743 23 1 -0.3634 0.3326 -0.9723 24 1 3.0202 1.3672 -0.3715 25 1 1.3781 1.9976 -0.6440 26 1 3.8536 0.7167 2.5617 27 1 2.8036 1.2476 3.8976 28 1 2.3037 -0.1071 2.8570 29 1 2.3511 4.3864 1.1077 30 1 2.8343 4.0825 2.7939 31 1 3.8836 3.5515 1.4581 32 1 -0.2814 1.3062 2.3745 33 1 0.1836 2.7858 3.2480 34 1 -0.3313 2.8812 1.5469 35 1 1.8100 -3.7933 -2.4918 36 1 2.7273 -3.1855 -5.0293 37 1 4.6806 -4.5032 -4.6367 38 1 3.9816 -0.2980 -3.6306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13068046_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:42:08 Heat of formation + Delta-G solvation = -61.539216 kcal Electronic energy + Delta-G solvation = -19473.369013 eV Core-core repulsion = 16389.631144 eV Total energy + Delta-G solvation = -3083.737869 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.88606 -41.57764 -38.68090 -37.37804 -33.48381 -31.98965 -29.61501 -29.04809 -28.30900 -28.02141 -27.38465 -25.15091 -23.93895 -22.35427 -18.92318 -18.61478 -18.35742 -17.98467 -16.97146 -16.30238 -16.06624 -15.95308 -15.36643 -15.03727 -14.74428 -14.56078 -14.25581 -14.24352 -14.07112 -13.92109 -13.88215 -13.53981 -13.40570 -13.19858 -13.06305 -12.73958 -12.64727 -12.42514 -12.16150 -12.10620 -11.40533 -10.91186 -10.86922 -10.73915 -10.64948 -10.44405 -10.30612 -8.98647 -0.18234 0.04306 0.99920 1.31907 1.39874 1.68516 1.79632 1.87162 1.92939 2.37142 2.58810 2.70305 3.13347 3.22851 3.33654 3.61659 3.80045 3.97705 4.18467 4.24967 4.31974 4.48280 4.57117 4.66444 4.68881 4.71685 4.75270 4.76171 4.88358 4.90016 4.93480 4.95407 5.09548 5.35874 5.47367 5.55001 5.63061 5.70606 5.97553 6.44896 6.77844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.451 5.451 3 C -0.246 4.246 4 Si 1.033 2.967 5 C -0.442 4.442 6 C -0.452 4.452 7 C -0.455 4.455 8 C 0.290 3.710 9 C 0.033 3.967 10 F -0.122 7.122 11 C -0.057 4.057 12 C -0.133 4.133 13 C -0.074 4.074 14 O -0.544 6.544 15 Si 0.939 3.061 16 H -0.243 1.243 17 H -0.250 1.250 18 H -0.246 1.246 19 C 0.116 3.884 20 N -0.486 5.486 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.041 0.959 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.383 0.617 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 0.300 -2.605 2.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 N -0.167 5.167 3 C -0.418 4.418 4 Si 1.227 2.773 5 C -0.550 4.550 6 C -0.560 4.560 7 C -0.562 4.562 8 C 0.056 3.944 9 C 0.008 3.992 10 F -0.101 7.101 11 C -0.083 4.083 12 C -0.136 4.136 13 C -0.184 4.184 14 O -0.350 6.350 15 Si 0.760 3.240 16 H -0.166 1.166 17 H -0.174 1.174 18 H -0.169 1.169 19 C -0.042 4.042 20 N -0.198 5.198 21 H 0.107 0.893 22 H 0.116 0.884 23 H 0.060 0.940 24 H 0.124 0.876 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.231 0.769 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.017 1.742 -1.859 2.548 hybrid contribution -0.648 -1.246 -1.031 1.742 sum -0.665 0.497 -2.889 3.006 Atomic orbital electron populations 1.23019 0.83831 1.05373 1.02645 1.59429 1.09091 1.14739 1.33405 1.27394 1.04875 0.89808 1.19712 0.78983 0.67313 0.66133 0.64888 1.26023 1.07747 1.11502 1.09755 1.26139 1.08290 1.16964 1.04563 1.26336 1.19127 1.04725 1.06053 1.20276 0.94202 0.90219 0.89670 1.18099 0.96978 0.91697 0.92386 1.91485 1.67439 1.83574 1.67573 1.21373 0.94445 1.00850 0.91665 1.20025 0.99989 0.94963 0.98632 1.24563 1.00625 0.94895 0.98366 1.86507 1.70610 1.40778 1.37155 0.85842 0.79888 0.79158 0.79074 1.16588 1.17378 1.16926 1.22422 0.96612 0.91253 0.93927 1.67705 1.12123 1.36833 1.03175 0.89257 0.88383 0.93996 0.87617 0.92262 0.91512 0.91667 0.90720 0.91241 0.90981 0.91107 0.90705 0.90954 0.91299 0.82941 0.90091 0.76876 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 8.85 60.07 0.53 0.53 16 2 N -0.45 -0.83 4.16 -118.75 -0.49 -1.33 16 3 C -0.25 -0.13 3.88 60.06 0.23 0.10 16 4 Si 1.03 -1.64 12.19 -169.99 -2.07 -3.72 16 5 C -0.44 -0.09 8.65 101.05 0.87 0.78 16 6 C -0.45 0.45 8.65 101.05 0.87 1.32 16 7 C -0.46 0.68 7.57 101.05 0.76 1.44 16 8 C 0.29 0.95 6.37 -154.85 -0.99 -0.03 16 9 C 0.03 0.10 7.01 -39.09 -0.27 -0.18 16 10 F -0.12 -0.38 14.88 2.25 0.03 -0.35 16 11 C -0.06 -0.10 9.75 -39.26 -0.38 -0.48 16 12 C -0.13 -0.16 5.43 -104.47 -0.57 -0.73 16 13 C -0.07 0.09 2.83 36.00 0.10 0.19 16 14 O -0.54 0.38 12.75 -35.23 -0.45 -0.07 16 15 Si 0.94 -1.45 25.10 -169.99 -4.27 -5.72 16 16 H -0.24 0.01 7.11 56.52 0.40 0.41 16 17 H -0.25 0.38 7.11 56.52 0.40 0.78 16 18 H -0.25 0.27 7.11 56.52 0.40 0.67 16 19 C 0.12 0.22 9.84 -17.57 -0.17 0.05 16 20 N -0.49 -1.66 8.28 -12.36 -0.10 -1.76 16 21 H 0.09 0.04 5.99 -51.93 -0.31 -0.27 16 22 H 0.10 -0.14 4.21 -51.93 -0.22 -0.36 16 23 H 0.04 0.01 8.09 -51.93 -0.42 -0.41 16 24 H 0.11 0.17 6.63 -51.93 -0.34 -0.18 16 25 H 0.06 0.01 7.74 -51.93 -0.40 -0.39 16 26 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 27 H 0.06 -0.01 7.96 -51.93 -0.41 -0.43 16 28 H 0.07 0.08 7.96 -51.93 -0.41 -0.33 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H 0.07 -0.08 7.96 -51.92 -0.41 -0.49 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 32 H 0.07 -0.11 6.38 -51.93 -0.33 -0.44 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.15 0.01 8.06 -52.49 -0.42 -0.41 16 36 H 0.08 -0.26 7.96 -51.93 -0.41 -0.68 16 37 H 0.38 -1.97 8.74 45.56 0.40 -1.58 16 38 H 0.16 0.01 4.88 -52.48 -0.26 -0.25 16 LS Contribution 309.88 15.07 4.67 4.67 Total: 0.00 -5.47 309.88 -6.51 -11.98 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: -4.82 Total: -6.72 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 1.00 Total: 3.01 kcal Atomic # 7 Polarization: -2.49 SS G_CDS: -0.60 Total: -3.09 kcal Atomic # 8 Polarization: 0.38 SS G_CDS: -0.45 Total: -0.07 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.03 Total: -0.35 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: -6.34 Total: -9.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -5.47 -6.51 -11.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.556 kcal (2) G-P(sol) polarization free energy of solvation -5.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds