Wall clock time and date at job start Mon Mar 8 2021 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46899 * 110.99996 * 2 1 4 4 Si 1.86309 * 109.46818 * 81.19453 * 3 2 1 5 5 C 1.86299 * 109.47036 * 52.11603 * 4 3 2 6 6 C 1.86303 * 109.46675 * 172.11592 * 4 3 2 7 7 C 1.86305 * 109.47021 * 292.11462 * 4 3 2 8 8 C 1.39147 * 110.99679 * 236.04970 * 2 1 3 9 9 C 1.39300 * 119.71613 * 303.95160 * 8 2 1 10 10 F 1.35108 * 120.47331 * 0.02562 * 9 8 2 11 11 C 1.38491 * 119.05964 * 180.02562 * 9 8 2 12 12 C 1.38862 * 118.48211 * 0.02562 * 11 9 8 13 13 C 1.50691 * 120.32716 * 179.97438 * 12 11 9 14 14 O 1.42907 * 109.47086 * 300.02250 * 13 12 11 15 15 Si 1.86298 * 109.47356 * 180.02562 * 13 12 11 16 16 H 1.48501 * 109.47186 * 59.99743 * 15 13 12 17 17 H 1.48503 * 109.47542 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47123 * 300.00178 * 15 13 12 19 19 C 1.38034 * 119.34312 * 359.97438 * 12 11 9 20 20 N 1.31974 * 120.90257 * 359.97438 * 19 12 11 21 21 H 1.08995 * 109.47430 * 191.12169 * 1 2 3 22 22 H 1.09002 * 109.46536 * 311.11628 * 1 2 3 23 23 H 1.08998 * 109.47264 * 71.11401 * 1 2 3 24 24 H 1.08995 * 109.47044 * 201.19168 * 3 2 1 25 25 H 1.08996 * 109.47277 * 321.19616 * 3 2 1 26 26 H 1.08991 * 109.47194 * 60.00169 * 5 4 3 27 27 H 1.09005 * 109.46715 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.46814 * 299.99869 * 5 4 3 29 29 H 1.08997 * 109.47409 * 60.00229 * 6 4 3 30 30 H 1.09010 * 109.46678 * 180.02562 * 6 4 3 31 31 H 1.08994 * 109.46915 * 299.99254 * 6 4 3 32 32 H 1.08993 * 109.46964 * 66.80385 * 7 4 3 33 33 H 1.08994 * 109.46669 * 186.81062 * 7 4 3 34 34 H 1.09003 * 109.46969 * 306.80425 * 7 4 3 35 35 H 1.07999 * 120.75608 * 180.02562 * 11 9 8 36 36 H 1.09002 * 109.47641 * 60.01823 * 13 12 11 37 37 H 0.96700 * 113.99719 * 180.02562 * 14 13 12 38 38 H 1.08005 * 119.54604 * 179.72688 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 14 1.9670 2.0475 1.7359 5 6 2.8207 0.8522 2.8819 6 6 2.8506 3.6871 1.7782 7 6 0.2013 2.2792 2.2831 8 6 1.9677 -0.7255 -1.0776 9 6 1.5843 -2.0532 -1.2528 10 9 0.7320 -2.6405 -0.3844 11 6 2.0892 -2.7627 -2.3296 12 6 2.9626 -2.1187 -3.1961 13 6 3.5372 -2.8514 -4.3808 14 8 4.2809 -3.9837 -3.9258 15 14 4.6627 -1.7103 -5.3305 16 1 5.7662 -1.2553 -4.4471 17 1 5.2296 -2.4325 -6.4978 18 1 3.8901 -0.5336 -5.8034 19 6 3.2992 -0.8008 -2.9613 20 7 2.8022 -0.1481 -1.9275 21 1 -0.3634 -1.0083 0.1982 22 1 -0.3632 0.6758 0.7743 23 1 -0.3634 0.3326 -0.9723 24 1 3.0202 1.3672 -0.3715 25 1 1.3781 1.9976 -0.6440 26 1 3.8536 0.7167 2.5617 27 1 2.8036 1.2476 3.8976 28 1 2.3037 -0.1071 2.8570 29 1 2.3511 4.3864 1.1077 30 1 2.8343 4.0825 2.7939 31 1 3.8836 3.5515 1.4581 32 1 -0.2814 1.3062 2.3745 33 1 0.1836 2.7858 3.2480 34 1 -0.3313 2.8812 1.5469 35 1 1.8100 -3.7933 -2.4918 36 1 2.7273 -3.1855 -5.0293 37 1 4.6806 -4.5032 -4.6367 38 1 3.9816 -0.2980 -3.6306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13068046_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:42:07 Heat of formation + Delta-G solvation = -55.337641 kcal Electronic energy + Delta-G solvation = -19473.100092 eV Core-core repulsion = 16389.631144 eV Total energy + Delta-G solvation = -3083.468948 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.07841 -41.68835 -38.68779 -37.34392 -33.58476 -32.07607 -29.54607 -29.01375 -28.28985 -27.99551 -27.38510 -25.21634 -24.01168 -22.44197 -18.98239 -18.65945 -18.39204 -18.07469 -17.11657 -16.33305 -16.16479 -15.89717 -15.42310 -15.07865 -14.69719 -14.59260 -14.32006 -14.26460 -14.04098 -13.90836 -13.81732 -13.51556 -13.40842 -13.15454 -13.01811 -12.73155 -12.63231 -12.39943 -12.08593 -12.03566 -11.45607 -10.94206 -10.90984 -10.70661 -10.67026 -10.48230 -10.27124 -9.08356 -0.31205 -0.08495 1.11596 1.44351 1.50688 1.73265 1.90055 1.95724 2.02557 2.27529 2.55148 2.71622 3.04903 3.20297 3.30908 3.61698 3.74163 3.96785 4.23311 4.28601 4.30632 4.42102 4.51805 4.62368 4.76876 4.82568 4.83434 4.85528 4.86645 4.86871 4.90056 4.95547 5.05081 5.27436 5.55375 5.59904 5.67026 5.68671 5.85631 6.63919 6.80573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.458 5.458 3 C -0.259 4.259 4 Si 1.098 2.902 5 C -0.459 4.459 6 C -0.461 4.461 7 C -0.461 4.461 8 C 0.274 3.726 9 C 0.016 3.984 10 F -0.127 7.127 11 C -0.058 4.058 12 C -0.135 4.135 13 C -0.071 4.071 14 O -0.563 6.563 15 Si 0.969 3.031 16 H -0.269 1.269 17 H -0.245 1.245 18 H -0.253 1.253 19 C 0.104 3.896 20 N -0.504 5.504 21 H 0.085 0.915 22 H 0.115 0.885 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.402 0.598 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 0.297 -3.074 3.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 N -0.174 5.174 3 C -0.428 4.428 4 Si 1.288 2.712 5 C -0.565 4.565 6 C -0.569 4.569 7 C -0.568 4.568 8 C 0.041 3.959 9 C -0.008 4.008 10 F -0.106 7.106 11 C -0.084 4.084 12 C -0.139 4.139 13 C -0.182 4.182 14 O -0.372 6.372 15 Si 0.792 3.208 16 H -0.194 1.194 17 H -0.169 1.169 18 H -0.177 1.177 19 C -0.053 4.053 20 N -0.217 5.217 21 H 0.104 0.896 22 H 0.134 0.866 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.185 0.815 36 H 0.125 0.875 37 H 0.253 0.747 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.403 1.707 -2.354 2.935 hybrid contribution -0.465 -1.265 -0.904 1.623 sum -0.868 0.442 -3.258 3.401 Atomic orbital electron populations 1.23089 0.83072 1.05645 1.03183 1.59506 1.09819 1.15198 1.32876 1.27702 1.04007 0.89422 1.21712 0.78003 0.66736 0.64416 0.62093 1.26266 1.07462 1.11873 1.10931 1.26245 1.08231 1.17516 1.04882 1.26370 1.18923 1.05037 1.06513 1.20519 0.94529 0.90709 0.90138 1.18275 0.97564 0.91952 0.93006 1.91464 1.67659 1.83619 1.67837 1.21605 0.94151 1.01458 0.91219 1.20316 0.99497 0.94839 0.99207 1.24597 1.01418 0.94878 0.97280 1.86456 1.70916 1.41059 1.38798 0.85418 0.78522 0.78554 0.78297 1.19398 1.16855 1.17670 1.22754 0.96742 0.91939 0.93869 1.67713 1.12663 1.37522 1.03808 0.89629 0.86639 0.94148 0.89022 0.92027 0.92444 0.91199 0.91768 0.90815 0.90614 0.91519 0.90578 0.90530 0.90568 0.81483 0.87539 0.74655 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 8.85 127.69 1.13 1.12 16 2 N -0.46 -2.23 4.16 -529.61 -2.20 -4.43 16 3 C -0.26 -0.53 3.88 127.69 0.50 -0.03 16 4 Si 1.10 -3.30 12.19 68.60 0.84 -2.47 16 5 C -0.46 -0.61 8.65 113.37 0.98 0.37 16 6 C -0.46 0.98 8.65 113.37 0.98 1.96 16 7 C -0.46 1.75 7.57 113.37 0.86 2.61 16 8 C 0.27 2.20 6.37 133.06 0.85 3.05 16 9 C 0.02 0.12 7.01 22.59 0.16 0.27 16 10 F -0.13 -0.95 14.88 44.97 0.67 -0.28 16 11 C -0.06 -0.22 9.75 22.48 0.22 0.00 16 12 C -0.14 -0.36 5.43 -19.77 -0.11 -0.46 16 13 C -0.07 0.23 2.83 71.23 0.20 0.43 16 14 O -0.56 1.24 12.75 -148.98 -1.90 -0.66 16 15 Si 0.97 -3.26 25.10 68.60 1.72 -1.54 16 16 H -0.27 -0.23 7.11 99.48 0.71 0.47 16 17 H -0.25 1.02 7.11 99.48 0.71 1.72 16 18 H -0.25 0.59 7.11 99.48 0.71 1.29 16 19 C 0.10 0.50 9.84 84.62 0.83 1.34 16 20 N -0.50 -4.18 8.28 -193.03 -1.60 -5.78 16 21 H 0.09 0.16 5.99 -2.39 -0.01 0.14 16 22 H 0.12 -0.35 4.21 -2.39 -0.01 -0.36 16 23 H 0.04 0.06 8.09 -2.39 -0.02 0.04 16 24 H 0.09 0.44 6.63 -2.39 -0.02 0.43 16 25 H 0.06 0.07 7.74 -2.39 -0.02 0.05 16 26 H 0.06 0.17 7.96 -2.39 -0.02 0.15 16 27 H 0.07 0.01 7.96 -2.38 -0.02 -0.01 16 28 H 0.06 0.22 7.96 -2.38 -0.02 0.20 16 29 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 30 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 31 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 32 H 0.08 -0.28 6.38 -2.39 -0.02 -0.30 16 33 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 35 H 0.17 0.00 8.06 -2.91 -0.02 -0.02 16 36 H 0.11 -0.88 7.96 -2.39 -0.02 -0.90 16 37 H 0.40 -4.61 8.74 -74.06 -0.65 -5.26 16 38 H 0.17 0.18 4.88 -2.91 -0.01 0.16 16 Total: 0.00 -13.21 309.88 5.30 -7.91 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: 1.17 Total: -3.41 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.60 Total: 10.65 kcal Atomic # 7 Polarization: -6.41 SS G_CDS: -3.80 Total: -10.21 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: -1.90 Total: -0.66 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.67 Total: -0.28 kcal Atomic # 14 Polarization: -6.57 SS G_CDS: 2.56 Total: -4.01 kcal Total: -13.21 5.30 -7.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13068046_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.423 kcal (2) G-P(sol) polarization free energy of solvation -13.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds