Wall clock time and date at job start Mon Mar 8 2021 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33321 * 125.95102 * 2 1 4 4 C 1.50700 * 122.71301 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47184 * 29.98833 * 4 3 2 6 6 Si 1.86294 * 109.47626 * 149.99487 * 4 3 2 7 7 N 1.32123 * 114.58139 * 179.75440 * 3 2 1 8 8 C 1.29690 * 116.86037 * 0.47573 * 7 3 2 9 9 N 1.38609 * 124.95217 * 179.81041 * 8 7 3 10 10 C 1.46497 * 120.00495 * 179.72030 * 9 8 7 11 11 C 1.53004 * 109.47104 * 174.69089 * 10 9 8 12 12 C 1.50697 * 112.84982 * 305.88580 * 11 10 9 13 13 C 1.38242 * 119.99856 * 102.96711 * 12 11 10 14 14 C 1.38230 * 119.99475 * 179.76486 * 13 12 11 15 15 C 1.38238 * 120.00842 * 0.50847 * 14 13 12 16 16 C 1.38243 * 119.99320 * 359.74311 * 15 14 13 17 17 C 1.38233 * 119.99919 * 283.24013 * 12 11 10 18 18 C 1.53783 * 113.61238 * 174.68940 * 11 10 9 19 19 C 1.53775 * 87.07833 * 270.88504 * 18 11 10 20 20 H 1.09008 * 113.61402 * 219.93454 * 19 18 11 21 21 O 1.42907 * 113.61582 * 89.12046 * 19 18 11 22 22 C 1.53777 * 87.08625 * 334.56678 * 19 18 11 23 23 S 1.70969 * 110.10238 * 359.54955 * 8 7 3 24 24 H 1.08994 * 109.47461 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46971 * 300.02022 * 1 2 3 26 26 H 1.09006 * 109.47081 * 60.01589 * 1 2 3 27 27 H 1.09007 * 109.46637 * 269.99768 * 4 3 2 28 28 H 0.96698 * 113.99632 * 180.02562 * 5 4 3 29 29 H 1.48496 * 110.00326 * 178.67955 * 6 4 3 30 30 H 1.48501 * 110.00007 * 300.00016 * 6 4 3 31 31 H 0.97006 * 119.99186 * 359.72297 * 9 8 7 32 32 H 1.09002 * 109.46800 * 54.69251 * 10 9 8 33 33 H 1.08997 * 109.47168 * 294.69264 * 10 9 8 34 34 H 1.07999 * 119.99828 * 359.97438 * 13 12 11 35 35 H 1.08003 * 119.99739 * 180.23220 * 14 13 12 36 36 H 1.07992 * 120.00343 * 179.72565 * 15 14 13 37 37 H 1.07998 * 119.99818 * 179.97438 * 16 15 14 38 38 H 1.07994 * 120.00270 * 0.02562 * 17 12 11 39 39 H 1.08992 * 113.61110 * 156.33487 * 18 11 10 40 40 H 1.09002 * 113.69023 * 25.44288 * 18 11 10 41 41 H 0.96701 * 114.00154 * 179.97438 * 21 19 18 42 42 H 1.09002 * 113.61437 * 139.98173 * 22 19 18 43 43 H 1.08998 * 113.61673 * 270.88537 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4815 2.5019 0.6744 6 14 2.9325 3.6147 0.8787 7 7 3.5851 0.8188 0.0052 8 6 3.9315 -0.4310 -0.0001 9 7 5.2384 -0.8927 0.0002 10 6 5.5065 -2.3330 0.0001 11 6 7.0120 -2.5715 -0.1330 12 6 7.6109 -1.8777 -1.3292 13 6 8.3348 -0.7120 -1.1613 14 6 8.8883 -0.0782 -2.2580 15 6 8.7091 -0.6043 -3.5238 16 6 7.9807 -1.7671 -3.6922 17 6 7.4316 -2.4038 -2.5948 18 6 7.4141 -4.0510 -0.0137 19 6 7.5314 -3.8155 1.5014 20 1 8.3843 -4.3188 1.9568 21 8 6.3115 -4.0386 2.2115 22 6 7.7907 -2.3360 1.1720 23 16 2.5412 -1.4261 -0.0002 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8898 26 1 -0.3633 0.5136 -0.8902 27 1 1.6090 2.8216 -1.0271 28 1 0.0690 3.3757 0.7126 29 1 2.4185 5.0077 0.8583 30 1 3.1217 3.1636 2.2809 31 1 5.9755 -0.2621 0.0005 32 1 4.9893 -2.7987 -0.8388 33 1 5.1507 -2.7689 0.9336 34 1 8.4707 -0.2983 -0.1730 35 1 9.4570 0.8305 -2.1265 36 1 9.1378 -0.1067 -4.3810 37 1 7.8404 -2.1779 -4.6811 38 1 6.8620 -3.3118 -2.7265 39 1 8.3641 -4.2853 -0.4939 40 1 6.6190 -4.7445 -0.2875 41 1 6.3790 -3.8925 3.1651 42 1 7.2986 -1.6438 1.8553 43 1 8.8436 -2.1014 1.0159 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13154428_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:24:13 Heat of formation + Delta-G solvation = 32.144571 kcal Electronic energy + Delta-G solvation = -26533.574310 eV Core-core repulsion = 22866.286068 eV Total energy + Delta-G solvation = -3667.288242 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.79627 -40.92574 -39.28943 -37.99851 -36.84250 -35.56592 -32.87923 -31.84632 -31.70174 -29.76163 -28.01268 -26.93438 -25.61119 -24.69258 -24.03680 -23.16627 -22.34109 -20.81633 -19.62611 -19.27540 -18.56494 -18.19695 -17.69552 -17.32885 -16.62440 -16.45895 -16.29173 -15.89953 -15.66668 -15.44357 -15.30766 -15.16176 -14.58372 -14.41166 -14.22094 -14.16295 -13.99803 -13.69291 -13.61470 -13.39575 -13.16605 -13.07060 -13.06355 -12.73442 -12.42439 -12.18512 -11.90421 -11.74728 -11.67100 -11.27134 -11.01091 -10.68898 -10.64127 -10.48616 -9.99973 -9.80423 -9.60832 -8.59793 -4.80007 -0.01039 0.14521 0.44219 0.51190 0.74282 1.26515 1.58962 1.83834 1.85287 2.02666 2.85204 3.06327 3.15071 3.39813 3.51988 3.66940 3.73861 3.87239 3.96243 4.13392 4.16260 4.17341 4.29442 4.33748 4.39028 4.41710 4.46462 4.61723 4.71982 4.75797 4.76614 4.83059 4.85382 4.88299 4.99718 5.06742 5.10394 5.15491 5.16776 5.21910 5.31641 5.58659 5.61332 5.66026 5.68235 6.12074 6.30820 6.62635 6.86535 6.88868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.255 4.255 3 C 0.088 3.912 4 C -0.042 4.042 5 O -0.545 6.545 6 Si 0.773 3.227 7 N -0.561 5.561 8 C 0.315 3.685 9 N -0.680 5.680 10 C 0.148 3.852 11 C -0.044 4.044 12 C -0.070 4.070 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.134 4.134 16 C -0.129 4.129 17 C -0.122 4.122 18 C -0.113 4.113 19 C 0.080 3.920 20 H 0.086 0.914 21 O -0.566 6.566 22 C -0.156 4.156 23 S 0.111 5.889 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.398 0.602 29 H -0.271 1.271 30 H -0.320 1.320 31 H 0.413 0.587 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.397 0.603 42 H 0.076 0.924 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -1.634 -0.967 4.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.378 4.378 3 C -0.042 4.042 4 C -0.154 4.154 5 O -0.355 6.355 6 Si 0.679 3.321 7 N -0.289 5.289 8 C -0.057 4.057 9 N -0.320 5.320 10 C 0.024 3.976 11 C -0.044 4.044 12 C -0.071 4.071 13 C -0.141 4.141 14 C -0.143 4.143 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.140 4.140 18 C -0.151 4.151 19 C 0.021 3.979 20 H 0.104 0.896 21 O -0.374 6.374 22 C -0.193 4.193 23 S 0.359 5.641 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.249 0.751 29 H -0.198 1.198 30 H -0.248 1.248 31 H 0.252 0.748 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.247 0.753 42 H 0.094 0.906 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.082 -2.755 -0.839 4.996 hybrid contribution -0.835 1.476 0.554 1.784 sum 3.248 -1.279 -0.285 3.502 Atomic orbital electron populations 1.20042 0.85725 1.01720 1.03510 1.25366 1.02182 0.93045 1.17235 1.19092 0.86763 0.95980 1.02319 1.24030 0.92165 0.96730 1.02480 1.86512 1.32953 1.36639 1.79385 0.93017 0.86732 0.73809 0.78575 1.65637 1.17015 1.17163 1.29078 1.23383 0.92584 0.91292 0.98435 1.43924 1.00961 1.07765 1.79392 1.21445 0.94734 0.78374 1.03008 1.20761 0.92697 0.97377 0.93588 1.19604 0.98143 0.95520 0.93788 1.21210 0.98173 0.95161 0.99537 1.21411 0.99726 1.00404 0.92717 1.21431 0.99193 0.96503 0.98043 1.21387 0.97872 0.96014 0.99380 1.21132 1.00091 1.00539 0.92262 1.23133 1.03406 0.93798 0.94770 1.22694 0.87321 0.94815 0.93058 0.89630 1.86396 1.33542 1.91869 1.25627 1.23773 1.01421 0.98473 0.95644 1.83862 0.96113 1.10025 1.74058 0.91839 0.90139 0.90617 0.88244 0.75083 1.19751 1.24832 0.74846 0.91782 0.89064 0.84902 0.84752 0.85126 0.85190 0.85635 0.87106 0.90290 0.75269 0.90567 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.24 8.91 71.24 0.63 0.39 16 2 C -0.26 -2.18 6.50 24.58 0.16 -2.02 16 3 C 0.09 0.82 5.96 41.40 0.25 1.07 16 4 C -0.04 -0.19 2.93 71.24 0.21 0.02 16 5 O -0.55 -1.69 9.80 -148.98 -1.46 -3.15 16 6 Si 0.77 3.72 32.08 68.60 2.20 5.92 16 7 N -0.56 -5.48 8.94 -189.86 -1.70 -7.18 16 8 C 0.31 2.33 8.24 179.32 1.48 3.80 16 9 N -0.68 -1.85 5.44 -351.00 -1.91 -3.76 16 10 C 0.15 -0.02 4.82 86.38 0.42 0.40 16 11 C -0.04 0.14 0.70 -52.40 -0.04 0.10 16 12 C -0.07 0.08 4.25 -19.87 -0.08 0.00 16 13 C -0.12 0.16 8.24 22.27 0.18 0.34 16 14 C -0.12 0.05 10.05 22.27 0.22 0.27 16 15 C -0.13 -0.05 10.05 22.27 0.22 0.17 16 16 C -0.13 -0.08 10.05 22.27 0.22 0.14 16 17 C -0.12 -0.02 9.39 22.27 0.21 0.19 16 18 C -0.11 0.50 6.72 31.12 0.21 0.71 16 19 C 0.08 -0.43 5.28 31.12 0.16 -0.27 16 20 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 21 O -0.57 1.91 11.51 -148.98 -1.72 0.19 16 22 C -0.16 0.84 6.05 31.12 0.19 1.03 16 23 S 0.11 0.69 22.27 -56.49 -1.26 -0.57 16 24 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.08 0.47 6.73 -2.39 -0.02 0.45 16 26 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 27 H 0.10 0.05 7.96 -2.38 -0.02 0.03 16 28 H 0.40 -2.19 8.74 -74.06 -0.65 -2.83 16 29 H -0.27 -1.50 7.11 99.48 0.71 -0.79 16 30 H -0.32 -4.62 7.11 99.48 0.71 -3.91 16 31 H 0.41 0.78 7.50 -92.70 -0.70 0.09 16 32 H 0.06 0.05 8.07 -2.39 -0.02 0.03 16 33 H 0.09 0.10 5.95 -2.39 -0.01 0.09 16 34 H 0.13 -0.56 7.02 -2.91 -0.02 -0.58 16 35 H 0.13 -0.47 8.06 -2.91 -0.02 -0.49 16 36 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.13 -0.26 8.06 -2.91 -0.02 -0.29 16 38 H 0.13 -0.22 8.04 -2.91 -0.02 -0.24 16 39 H 0.11 -0.63 8.09 -2.39 -0.02 -0.65 16 40 H 0.08 -0.25 8.10 -2.39 -0.02 -0.26 16 41 H 0.40 -3.94 9.12 -74.06 -0.68 -4.61 16 42 H 0.08 -0.33 8.10 -2.39 -0.02 -0.35 16 43 H 0.10 -0.71 7.45 -2.39 -0.02 -0.72 16 Total: 0.00 -15.73 361.87 -2.11 -17.84 By element: Atomic # 1 Polarization: -14.74 SS G_CDS: -0.92 Total: -15.66 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.65 Total: 6.35 kcal Atomic # 7 Polarization: -7.33 SS G_CDS: -3.61 Total: -10.93 kcal Atomic # 8 Polarization: 0.21 SS G_CDS: -3.18 Total: -2.96 kcal Atomic # 14 Polarization: 3.72 SS G_CDS: 2.20 Total: 5.92 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -1.26 Total: -0.57 kcal Total: -15.73 -2.11 -17.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13154428_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.987 kcal (2) G-P(sol) polarization free energy of solvation -15.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds