Wall clock time and date at job start Mon Mar 8 2021 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47209 * 2 1 4 4 C 1.50695 * 109.47429 * 240.00374 * 2 1 3 5 5 C 1.38612 * 120.72074 * 299.99606 * 4 2 1 6 6 N 1.32273 * 119.19810 * 179.97438 * 5 4 2 7 7 C 1.32492 * 120.74274 * 0.02562 * 6 5 4 8 8 N 1.38409 * 119.21698 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99772 * 180.27705 * 8 7 6 10 10 H 1.09001 * 112.85160 * 25.05341 * 9 8 7 11 11 C 1.53784 * 113.61507 * 156.25314 * 9 8 7 12 12 C 1.53777 * 87.08269 * 89.11382 * 11 9 8 13 13 H 1.09007 * 113.61513 * 270.88559 * 12 11 9 14 14 C 1.52991 * 113.61535 * 140.06799 * 12 11 9 15 15 O 1.42904 * 109.47415 * 174.99875 * 14 12 11 16 16 C 1.53781 * 113.61116 * 253.85694 * 9 8 7 17 17 N 1.32489 * 121.56429 * 0.27365 * 7 6 5 18 18 C 1.32282 * 120.74091 * 359.43918 * 17 7 6 19 19 H 0.96696 * 114.00077 * 299.99554 * 1 2 3 20 20 H 1.09001 * 109.47399 * 119.99905 * 2 1 3 21 21 H 1.48504 * 110.00178 * 300.00479 * 3 2 1 22 22 H 1.48503 * 109.99833 * 61.31870 * 3 2 1 23 23 H 1.07997 * 120.39562 * 359.96239 * 5 4 2 24 24 H 0.97001 * 119.99783 * 359.97438 * 8 7 6 25 25 H 1.08996 * 113.61507 * 203.66303 * 11 9 8 26 26 H 1.09008 * 113.60985 * 334.56259 * 11 9 8 27 27 H 1.09000 * 109.46971 * 294.99937 * 14 12 11 28 28 H 1.09001 * 109.47324 * 54.99823 * 14 12 11 29 29 H 0.96700 * 114.00157 * 179.97438 * 15 14 12 30 30 H 1.08993 * 113.61427 * 25.43567 * 16 9 8 31 31 H 1.09003 * 113.61197 * 156.33752 * 16 9 8 32 32 H 1.08001 * 120.40197 * 180.24949 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6058 -2.0371 -1.4647 6 7 2.0628 -2.6309 -2.5547 7 6 2.8234 -1.9721 -3.4166 8 7 3.2848 -2.6245 -4.5467 9 6 4.1320 -1.9143 -5.5079 10 1 4.6767 -1.0835 -5.0592 11 6 5.0161 -2.8447 -6.3551 12 6 3.8492 -2.9145 -7.3542 13 1 3.1415 -3.7164 -7.1437 14 6 4.2930 -2.8828 -8.8180 15 8 3.1567 -3.0688 -9.6644 16 6 3.4061 -1.5424 -6.8117 17 7 3.1577 -0.7053 -3.2194 18 6 2.7294 -0.0512 -2.1524 19 1 -0.3933 0.4416 0.7650 20 1 1.7924 -0.5138 0.8900 21 1 1.5614 2.4680 -1.2085 22 1 1.5879 2.4585 1.2243 23 1 0.9867 -2.5795 -0.7655 24 1 3.0508 -3.5533 -4.7000 25 1 5.9050 -2.3572 -6.7553 26 1 5.2355 -3.7972 -5.8725 27 1 4.7553 -1.9202 -9.0367 28 1 5.0136 -3.6809 -8.9966 29 1 3.3640 -3.0596 -10.6088 30 1 2.3266 -1.4443 -6.6976 31 1 3.8557 -0.6995 -7.3366 32 1 3.0019 0.9825 -1.9991 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270476_12175864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:21 Heat of formation + Delta-G solvation = 8.223304 kcal Electronic energy + Delta-G solvation = -16564.417732 eV Core-core repulsion = 13721.031447 eV Total energy + Delta-G solvation = -2843.386285 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.15470 -40.50793 -38.09409 -37.39003 -35.42421 -34.75477 -32.25111 -28.85289 -26.77383 -26.43342 -25.90504 -23.51883 -22.97298 -20.47203 -19.54032 -18.66802 -18.33502 -18.15502 -16.72258 -16.63121 -16.36992 -15.93948 -15.76398 -15.58022 -15.23887 -14.69708 -14.57076 -13.96352 -13.68494 -13.42001 -13.32787 -13.07150 -12.33995 -11.99504 -11.92972 -11.76761 -11.69100 -11.39963 -11.13340 -10.77875 -10.65388 -10.05454 -9.12272 -4.92257 0.01521 0.10988 1.30739 1.61004 1.75559 1.97116 2.71370 3.10702 3.22656 3.37772 3.49184 3.61920 3.66062 3.71017 3.85714 3.88525 4.14438 4.18016 4.40255 4.55026 4.55926 4.64010 4.69737 4.76731 4.78387 4.83741 5.02132 5.10674 5.18341 5.37929 5.76851 6.01048 6.35375 6.63365 6.88424 7.22774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.060 4.060 3 Si 0.756 3.244 4 C -0.248 4.248 5 C 0.212 3.788 6 N -0.591 5.591 7 C 0.552 3.448 8 N -0.676 5.676 9 C 0.133 3.867 10 H 0.106 0.894 11 C -0.122 4.122 12 C -0.114 4.114 13 H 0.081 0.919 14 C 0.081 3.919 15 O -0.601 6.601 16 C -0.145 4.145 17 N -0.574 5.574 18 C 0.192 3.808 19 H 0.397 0.603 20 H 0.104 0.896 21 H -0.299 1.299 22 H -0.280 1.280 23 H 0.184 0.816 24 H 0.417 0.583 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.396 0.604 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 0.943 1.374 5.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.170 4.170 3 Si 0.661 3.339 4 C -0.256 4.256 5 C 0.044 3.956 6 N -0.313 5.313 7 C 0.196 3.804 8 N -0.312 5.312 9 C 0.027 3.973 10 H 0.124 0.876 11 C -0.160 4.160 12 C -0.132 4.132 13 H 0.099 0.901 14 C 0.004 3.996 15 O -0.409 6.409 16 C -0.184 4.184 17 N -0.297 5.297 18 C 0.025 3.975 19 H 0.248 0.752 20 H 0.122 0.878 21 H -0.227 1.227 22 H -0.207 1.207 23 H 0.201 0.799 24 H 0.255 0.745 25 H 0.137 0.863 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.245 0.755 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.127 1.030 0.430 5.247 hybrid contribution -1.644 -0.078 0.533 1.730 sum 3.483 0.952 0.963 3.737 Atomic orbital electron populations 1.86538 1.18547 1.80654 1.51303 1.24600 0.83925 1.11239 0.97225 0.94404 0.90203 0.72311 0.76962 1.20851 1.06466 0.97197 1.01066 1.23158 0.90122 0.91461 0.90828 1.67981 1.16794 1.40180 1.06385 1.19605 0.87312 0.86091 0.87424 1.43904 1.53511 1.14455 1.19291 1.21881 0.91588 0.96141 0.87647 0.87612 1.23306 0.97175 1.00615 0.94881 1.22633 0.98846 0.98013 0.93716 0.90071 1.22298 0.87500 1.00591 0.89227 1.86456 1.35903 1.96349 1.22238 1.23572 1.00086 0.97904 0.96833 1.67955 1.29141 1.08458 1.24106 1.23152 0.88788 0.99527 0.85988 0.75159 0.87804 1.22652 1.20662 0.79865 0.74533 0.86259 0.89864 0.92093 0.92274 0.75481 0.93591 0.87976 0.79598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.21 12.76 -148.98 -1.90 -2.11 16 2 C -0.06 0.15 2.84 71.23 0.20 0.35 16 3 Si 0.76 -2.79 29.87 68.60 2.05 -0.74 16 4 C -0.25 -0.66 5.43 -19.69 -0.11 -0.77 16 5 C 0.21 1.07 10.92 84.72 0.93 1.99 16 6 N -0.59 -5.26 10.46 -197.99 -2.07 -7.33 16 7 C 0.55 4.63 8.43 261.49 2.20 6.84 16 8 N -0.68 -2.83 5.41 -327.93 -1.77 -4.61 16 9 C 0.13 0.10 4.31 45.52 0.20 0.30 16 10 H 0.11 0.18 7.40 -2.39 -0.02 0.16 16 11 C -0.12 0.48 7.38 31.12 0.23 0.71 16 12 C -0.11 0.03 3.90 -10.18 -0.04 -0.01 16 13 H 0.08 0.22 8.14 -2.38 -0.02 0.20 16 14 C 0.08 -0.13 6.89 71.98 0.50 0.36 16 15 O -0.60 -1.52 13.66 -148.98 -2.04 -3.56 16 16 C -0.14 -0.24 7.45 31.21 0.23 -0.01 16 17 N -0.57 -4.28 9.15 -197.98 -1.81 -6.09 16 18 C 0.19 0.67 9.92 84.71 0.84 1.51 16 19 H 0.40 -3.09 8.74 -74.06 -0.65 -3.74 16 20 H 0.10 -0.76 7.96 -2.39 -0.02 -0.78 16 21 H -0.30 -1.23 7.11 99.48 0.71 -0.52 16 22 H -0.28 -0.06 7.11 99.48 0.71 0.65 16 23 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 24 H 0.42 1.06 8.82 -92.71 -0.82 0.24 16 25 H 0.12 -0.89 8.10 -2.39 -0.02 -0.91 16 26 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 27 H 0.06 -0.26 7.85 -2.39 -0.02 -0.28 16 28 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.40 -2.42 9.12 -74.06 -0.68 -3.09 16 30 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.10 -0.06 7.91 -2.39 -0.02 -0.08 16 32 H 0.19 -0.42 5.04 -2.91 -0.01 -0.43 16 Total: 0.00 -18.72 274.56 -3.30 -22.02 By element: Atomic # 1 Polarization: -7.90 SS G_CDS: -0.94 Total: -8.84 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.18 Total: 11.27 kcal Atomic # 7 Polarization: -12.37 SS G_CDS: -5.66 Total: -18.03 kcal Atomic # 8 Polarization: -1.74 SS G_CDS: -3.94 Total: -5.67 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: 2.05 Total: -0.74 kcal Total: -18.72 -3.30 -22.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270476_12175864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.240 kcal (2) G-P(sol) polarization free energy of solvation -18.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds