Wall clock time and date at job start Mon Mar 8 2021 05:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38840 * 120.33460 * 299.72263 * 4 2 1 6 6 C 1.38347 * 118.50260 * 179.75957 * 5 4 2 7 7 C 1.39091 * 119.10011 * 0.51991 * 6 5 4 8 8 N 1.38998 * 119.70842 * 179.74656 * 7 6 5 9 9 C 1.46500 * 119.99905 * 359.97438 * 8 7 6 10 10 H 1.09000 * 112.84886 * 25.33037 * 9 8 7 11 11 C 1.53788 * 113.61432 * 156.52940 * 9 8 7 12 12 C 1.53785 * 87.07743 * 89.11747 * 11 9 8 13 13 H 1.09003 * 113.61414 * 270.79732 * 12 11 9 14 14 C 1.52997 * 113.61443 * 139.98295 * 12 11 9 15 15 O 1.42901 * 109.47442 * 174.99608 * 14 12 11 16 16 C 1.53788 * 113.61354 * 254.13730 * 9 8 7 17 17 N 1.32429 * 120.58742 * 359.72362 * 7 6 5 18 18 C 1.31943 * 121.62278 * 0.02562 * 17 7 6 19 19 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 20 20 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 21 21 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 22 22 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 23 23 H 1.08003 * 120.74743 * 0.02562 * 5 4 2 24 24 H 1.07997 * 120.44987 * 180.26162 * 6 5 4 25 25 H 0.97005 * 120.00206 * 179.97438 * 8 7 6 26 26 H 1.08999 * 113.61244 * 203.66237 * 11 9 8 27 27 H 1.08997 * 113.61324 * 334.57052 * 11 9 8 28 28 H 1.09000 * 109.47194 * 294.99995 * 14 12 11 29 29 H 1.09009 * 109.47135 * 54.99257 * 14 12 11 30 30 H 0.96699 * 113.99645 * 179.97438 * 15 14 12 31 31 H 1.08999 * 113.61257 * 25.42994 * 16 9 8 32 32 H 1.09000 * 113.61146 * 156.33456 * 16 9 8 33 33 H 1.08007 * 119.56913 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6050 -2.0413 -1.4540 6 6 2.0824 -2.6548 -2.5984 7 6 2.8777 -1.9251 -3.4757 8 7 3.3685 -2.5305 -4.6266 9 6 3.0480 -3.9315 -4.9109 10 1 2.1196 -4.2569 -4.4416 11 6 3.1452 -4.2952 -6.4020 12 6 4.6235 -4.6305 -6.1430 13 1 5.2929 -3.7796 -6.2697 14 6 5.1065 -5.8813 -6.8800 15 8 6.5109 -6.0442 -6.6721 16 6 4.2259 -4.8924 -4.6779 17 7 3.1711 -0.6584 -3.2243 18 6 2.7257 -0.0463 -2.1436 19 1 -0.3934 0.4418 0.7650 20 1 1.7923 -0.5138 0.8901 21 1 1.5616 2.4678 -1.2086 22 1 1.5878 2.4586 1.2241 23 1 0.9886 -2.5841 -0.7526 24 1 1.8442 -3.6876 -2.8057 25 1 3.9233 -2.0254 -5.2415 26 1 2.5435 -5.1605 -6.6804 27 1 3.0006 -3.4454 -7.0690 28 1 4.5788 -6.7549 -6.4975 29 1 4.9070 -5.7744 -7.9463 30 1 6.8861 -6.8196 -7.1114 31 1 4.9530 -4.5243 -3.9542 32 1 3.9191 -5.9206 -4.4859 33 1 2.9851 0.9879 -1.9717 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13270476_13915762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:25 Heat of formation + Delta-G solvation = -6.878804 kcal Electronic energy + Delta-G solvation = -16412.081124 eV Core-core repulsion = 13633.465873 eV Total energy + Delta-G solvation = -2778.615250 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49843 -40.39061 -37.97893 -37.38261 -35.20032 -33.33223 -31.31761 -28.83793 -26.83224 -26.17069 -24.87556 -23.44868 -22.36885 -20.35599 -18.83732 -18.46403 -18.30943 -17.80091 -16.73013 -16.53516 -16.16330 -15.87025 -15.30799 -15.25079 -15.12550 -14.61643 -14.04453 -13.87975 -13.84013 -13.61774 -13.46192 -13.13279 -12.34411 -11.97988 -11.91272 -11.73378 -11.47174 -11.05022 -10.87779 -10.65192 -10.52227 -10.24015 -8.64059 -4.93848 0.31992 0.50575 1.32170 1.61649 1.98897 2.05226 2.85517 3.08004 3.35166 3.41485 3.56202 3.65401 3.71769 3.87588 3.96497 4.04611 4.16417 4.26370 4.38088 4.39581 4.47939 4.50947 4.57046 4.62899 4.69310 4.81652 4.99571 5.00809 5.10797 5.20781 5.39294 5.60199 6.06923 6.46935 6.58418 6.63871 7.22727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.060 4.060 3 Si 0.675 3.325 4 C -0.189 4.189 5 C -0.005 4.005 6 C -0.238 4.238 7 C 0.409 3.591 8 N -0.704 5.704 9 C 0.129 3.871 10 H 0.099 0.901 11 C -0.139 4.139 12 C -0.110 4.110 13 H 0.098 0.902 14 C 0.084 3.916 15 O -0.573 6.573 16 C -0.149 4.149 17 N -0.538 5.538 18 C 0.159 3.841 19 H 0.379 0.621 20 H 0.074 0.926 21 H -0.253 1.253 22 H -0.260 1.260 23 H 0.135 0.865 24 H 0.135 0.865 25 H 0.407 0.593 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.380 0.620 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -3.287 0.149 3.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.170 4.170 3 Si 0.576 3.424 4 C -0.194 4.194 5 C -0.031 4.031 6 C -0.263 4.263 7 C 0.174 3.826 8 N -0.336 5.336 9 C 0.022 3.978 10 H 0.117 0.883 11 C -0.177 4.177 12 C -0.129 4.129 13 H 0.116 0.884 14 C 0.006 3.994 15 O -0.379 6.379 16 C -0.188 4.188 17 N -0.255 5.255 18 C 0.001 3.999 19 H 0.227 0.773 20 H 0.092 0.908 21 H -0.178 1.178 22 H -0.185 1.185 23 H 0.152 0.848 24 H 0.152 0.848 25 H 0.243 0.757 26 H 0.117 0.883 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.227 0.773 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.761 -1.952 -0.679 2.203 hybrid contribution -1.366 -0.966 0.499 1.746 sum -0.605 -2.919 -0.180 2.986 Atomic orbital electron populations 1.86590 1.18118 1.80077 1.49756 1.24519 0.84140 1.10552 0.97832 0.95216 0.91748 0.74857 0.80547 1.19914 1.04871 0.95618 0.98949 1.21167 0.93562 0.93296 0.95026 1.21475 1.05446 1.02025 0.97342 1.18344 0.89120 0.88428 0.86703 1.44138 1.55920 1.10887 1.22675 1.21834 0.98500 0.80780 0.96681 0.88349 1.23341 0.95941 1.02494 0.95920 1.22619 0.95963 0.98271 0.96010 0.88417 1.22195 0.81771 0.96897 0.98530 1.86500 1.22600 1.51456 1.77350 1.23628 0.98357 0.99901 0.96880 1.67152 1.27507 1.09067 1.21771 1.22140 0.91759 0.98479 0.87480 0.77346 0.90763 1.17766 1.18480 0.84761 0.84756 0.75701 0.88284 0.90255 0.93387 0.93500 0.77260 0.90573 0.89005 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.78 12.76 -35.23 -0.45 -1.22 16 2 C -0.06 -0.02 2.82 36.01 0.10 0.08 16 3 Si 0.68 -0.31 29.82 -169.99 -5.07 -5.38 16 4 C -0.19 -0.39 5.43 -104.47 -0.57 -0.96 16 5 C 0.00 -0.01 9.77 -39.32 -0.38 -0.39 16 6 C -0.24 -0.40 9.28 -39.22 -0.36 -0.76 16 7 C 0.41 1.11 7.65 -155.02 -1.19 -0.07 16 8 N -0.70 -0.47 5.44 -53.14 -0.29 -0.76 16 9 C 0.13 -0.16 4.07 -67.11 -0.27 -0.44 16 10 H 0.10 -0.19 6.17 -51.93 -0.32 -0.51 16 11 C -0.14 0.32 7.38 -25.91 -0.19 0.13 16 12 C -0.11 0.11 3.90 -89.67 -0.35 -0.24 16 13 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 14 C 0.08 -0.10 6.88 37.16 0.26 0.16 16 15 O -0.57 -0.35 13.66 -35.23 -0.48 -0.84 16 16 C -0.15 0.15 7.45 -25.77 -0.19 -0.04 16 17 N -0.54 -2.11 10.39 -12.44 -0.13 -2.23 16 18 C 0.16 0.41 9.84 -17.57 -0.17 0.24 16 19 H 0.38 -0.97 8.74 45.56 0.40 -0.57 16 20 H 0.07 -0.10 7.96 -51.92 -0.41 -0.52 16 21 H -0.25 -0.71 7.11 56.52 0.40 -0.30 16 22 H -0.26 -0.36 7.11 56.52 0.40 0.05 16 23 H 0.13 0.05 8.06 -52.48 -0.42 -0.37 16 24 H 0.13 -0.05 6.06 -52.49 -0.32 -0.37 16 25 H 0.41 0.17 8.83 -40.82 -0.36 -0.19 16 26 H 0.10 -0.35 8.10 -51.93 -0.42 -0.77 16 27 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 28 H 0.05 -0.11 7.85 -51.93 -0.41 -0.51 16 29 H 0.05 -0.09 8.14 -51.92 -0.42 -0.51 16 30 H 0.38 -1.35 9.12 45.56 0.42 -0.93 16 31 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 32 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 33 H 0.16 0.08 4.88 -52.48 -0.26 -0.18 16 LS Contribution 277.00 15.07 4.17 4.17 Total: 0.00 -7.23 277.00 -8.97 -16.20 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: -3.40 Total: -7.63 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.32 Total: -2.30 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: -0.42 Total: -3.00 kcal Atomic # 8 Polarization: -1.13 SS G_CDS: -0.93 Total: -2.06 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -5.07 Total: -5.38 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -7.23 -8.97 -16.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270476_13915762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.322 kcal (2) G-P(sol) polarization free energy of solvation -7.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds