Wall clock time and date at job start Mon Mar 8 2021 05:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38840 * 120.33460 * 299.72263 * 4 2 1 6 6 C 1.38347 * 118.50260 * 179.75957 * 5 4 2 7 7 C 1.39091 * 119.10011 * 0.51991 * 6 5 4 8 8 N 1.38998 * 119.70842 * 179.74656 * 7 6 5 9 9 C 1.46500 * 119.99905 * 359.97438 * 8 7 6 10 10 H 1.09000 * 112.84886 * 25.33037 * 9 8 7 11 11 C 1.53788 * 113.61432 * 156.52940 * 9 8 7 12 12 C 1.53785 * 87.07743 * 89.11747 * 11 9 8 13 13 H 1.09003 * 113.61414 * 270.79732 * 12 11 9 14 14 C 1.52997 * 113.61443 * 139.98295 * 12 11 9 15 15 O 1.42901 * 109.47442 * 174.99608 * 14 12 11 16 16 C 1.53788 * 113.61354 * 254.13730 * 9 8 7 17 17 N 1.32429 * 120.58742 * 359.72362 * 7 6 5 18 18 C 1.31943 * 121.62278 * 0.02562 * 17 7 6 19 19 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 20 20 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 21 21 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 22 22 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 23 23 H 1.08003 * 120.74743 * 0.02562 * 5 4 2 24 24 H 1.07997 * 120.44987 * 180.26162 * 6 5 4 25 25 H 0.97005 * 120.00206 * 179.97438 * 8 7 6 26 26 H 1.08999 * 113.61244 * 203.66237 * 11 9 8 27 27 H 1.08997 * 113.61324 * 334.57052 * 11 9 8 28 28 H 1.09000 * 109.47194 * 294.99995 * 14 12 11 29 29 H 1.09009 * 109.47135 * 54.99257 * 14 12 11 30 30 H 0.96699 * 113.99645 * 179.97438 * 15 14 12 31 31 H 1.08999 * 113.61257 * 25.42994 * 16 9 8 32 32 H 1.09000 * 113.61146 * 156.33456 * 16 9 8 33 33 H 1.08007 * 119.56913 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6050 -2.0413 -1.4540 6 6 2.0824 -2.6548 -2.5984 7 6 2.8777 -1.9251 -3.4757 8 7 3.3685 -2.5305 -4.6266 9 6 3.0480 -3.9315 -4.9109 10 1 2.1196 -4.2569 -4.4416 11 6 3.1452 -4.2952 -6.4020 12 6 4.6235 -4.6305 -6.1430 13 1 5.2929 -3.7796 -6.2697 14 6 5.1065 -5.8813 -6.8800 15 8 6.5109 -6.0442 -6.6721 16 6 4.2259 -4.8924 -4.6779 17 7 3.1711 -0.6584 -3.2243 18 6 2.7257 -0.0463 -2.1436 19 1 -0.3934 0.4418 0.7650 20 1 1.7923 -0.5138 0.8901 21 1 1.5616 2.4678 -1.2086 22 1 1.5878 2.4586 1.2241 23 1 0.9886 -2.5841 -0.7526 24 1 1.8442 -3.6876 -2.8057 25 1 3.9233 -2.0254 -5.2415 26 1 2.5435 -5.1605 -6.6804 27 1 3.0006 -3.4454 -7.0690 28 1 4.5788 -6.7549 -6.4975 29 1 4.9070 -5.7744 -7.9463 30 1 6.8861 -6.8196 -7.1114 31 1 4.9530 -4.5243 -3.9542 32 1 3.9191 -5.9206 -4.4859 33 1 2.9851 0.9879 -1.9717 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270476_13915762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:24 Heat of formation + Delta-G solvation = -8.573508 kcal Electronic energy + Delta-G solvation = -16412.154612 eV Core-core repulsion = 13633.465873 eV Total energy + Delta-G solvation = -2778.688738 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.55262 -40.34983 -38.00994 -37.34820 -35.23141 -33.44596 -31.37121 -28.77149 -26.71445 -26.20621 -24.94498 -23.42734 -22.40910 -20.28949 -18.88517 -18.49286 -18.25860 -17.85435 -16.70345 -16.55997 -16.12822 -15.82734 -15.38084 -15.29269 -15.13356 -14.62156 -14.08745 -13.94015 -13.92346 -13.52029 -13.37594 -13.06358 -12.41427 -12.06669 -11.85591 -11.68144 -11.37055 -11.06378 -10.81548 -10.72594 -10.60572 -10.30810 -8.70670 -4.92103 0.20273 0.38976 1.32261 1.59353 1.95618 2.04398 2.76105 3.23712 3.43486 3.46055 3.58225 3.69738 3.81051 3.83848 3.97315 4.09213 4.12898 4.35643 4.36919 4.47413 4.55152 4.65175 4.70605 4.75601 4.77882 4.83155 5.00233 5.06558 5.13726 5.24534 5.34565 5.56064 6.04286 6.50221 6.63112 6.89002 7.11711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.065 4.065 3 Si 0.750 3.250 4 C -0.198 4.198 5 C -0.013 4.013 6 C -0.241 4.241 7 C 0.394 3.606 8 N -0.704 5.704 9 C 0.126 3.874 10 H 0.109 0.891 11 C -0.126 4.126 12 C -0.115 4.115 13 H 0.078 0.922 14 C 0.081 3.919 15 O -0.600 6.600 16 C -0.145 4.145 17 N -0.566 5.566 18 C 0.144 3.856 19 H 0.395 0.605 20 H 0.097 0.903 21 H -0.302 1.302 22 H -0.281 1.281 23 H 0.149 0.851 24 H 0.154 0.846 25 H 0.405 0.595 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.395 0.605 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 -4.346 0.405 4.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.174 4.174 3 Si 0.655 3.345 4 C -0.204 4.204 5 C -0.038 4.038 6 C -0.265 4.265 7 C 0.158 3.842 8 N -0.335 5.335 9 C 0.020 3.980 10 H 0.127 0.873 11 C -0.164 4.164 12 C -0.133 4.133 13 H 0.097 0.903 14 C 0.003 3.997 15 O -0.409 6.409 16 C -0.184 4.184 17 N -0.283 5.283 18 C -0.013 4.013 19 H 0.245 0.755 20 H 0.115 0.885 21 H -0.229 1.229 22 H -0.207 1.207 23 H 0.167 0.833 24 H 0.171 0.829 25 H 0.241 0.759 26 H 0.137 0.863 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.245 0.755 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.257 -3.041 -0.414 3.080 hybrid contribution -1.209 -0.630 0.393 1.419 sum -0.952 -3.671 -0.021 3.793 Atomic orbital electron populations 1.86540 1.18683 1.80565 1.51115 1.24650 0.83808 1.11033 0.97954 0.94332 0.90642 0.72846 0.76635 1.20142 1.04741 0.96026 0.99443 1.21430 0.93634 0.93398 0.95380 1.21702 1.04934 1.02842 0.97049 1.18627 0.89613 0.88419 0.87503 1.44268 1.55579 1.11576 1.22081 1.21975 0.98716 0.79689 0.97638 0.87275 1.23310 0.95052 1.03046 0.95009 1.22609 0.96552 0.97926 0.96260 0.90322 1.22304 0.81141 0.97174 0.99044 1.86456 1.23724 1.52710 1.77969 1.23617 0.97920 1.00592 0.96278 1.67138 1.28570 1.10000 1.22640 1.22394 0.92222 0.99099 0.87578 0.75492 0.88502 1.22948 1.20720 0.83337 0.82879 0.75936 0.86330 0.90480 0.91940 0.92720 0.75497 0.92704 0.87592 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.39 12.76 -148.98 -1.90 -3.29 16 2 C -0.06 -0.02 2.82 71.24 0.20 0.18 16 3 Si 0.75 -0.45 29.82 68.60 2.05 1.60 16 4 C -0.20 -0.88 5.43 -19.76 -0.11 -0.98 16 5 C -0.01 -0.04 9.77 22.44 0.22 0.17 16 6 C -0.24 -0.80 9.28 22.50 0.21 -0.59 16 7 C 0.39 2.46 7.65 133.05 1.02 3.48 16 8 N -0.70 -1.51 5.44 -322.04 -1.75 -3.26 16 9 C 0.13 -0.35 4.07 45.52 0.19 -0.16 16 10 H 0.11 -0.54 6.17 -2.39 -0.01 -0.55 16 11 C -0.13 0.66 7.38 31.12 0.23 0.89 16 12 C -0.11 0.20 3.90 -10.18 -0.04 0.16 16 13 H 0.08 0.15 8.14 -2.39 -0.02 0.14 16 14 C 0.08 -0.22 6.88 71.98 0.50 0.27 16 15 O -0.60 -0.85 13.66 -148.98 -2.04 -2.89 16 16 C -0.15 0.28 7.45 31.21 0.23 0.52 16 17 N -0.57 -5.18 10.39 -193.27 -2.01 -7.19 16 18 C 0.14 0.90 9.84 84.63 0.83 1.73 16 19 H 0.39 -2.24 8.74 -74.06 -0.65 -2.88 16 20 H 0.10 -0.41 7.96 -2.38 -0.02 -0.43 16 21 H -0.30 -2.24 7.11 99.48 0.71 -1.53 16 22 H -0.28 -0.77 7.11 99.48 0.71 -0.07 16 23 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 24 H 0.15 -0.24 6.06 -2.91 -0.02 -0.25 16 25 H 0.40 0.92 8.83 -92.70 -0.82 0.10 16 26 H 0.12 -1.05 8.10 -2.39 -0.02 -1.07 16 27 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.06 -0.36 7.85 -2.39 -0.02 -0.38 16 29 H 0.05 -0.25 8.14 -2.38 -0.02 -0.27 16 30 H 0.40 -2.79 9.12 -74.06 -0.68 -3.47 16 31 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 -0.52 7.90 -2.39 -0.02 -0.54 16 33 H 0.17 0.38 4.88 -2.91 -0.01 0.36 16 Total: 0.00 -17.33 277.00 -3.12 -20.45 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: -0.95 Total: -11.10 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 3.48 Total: 5.68 kcal Atomic # 7 Polarization: -6.69 SS G_CDS: -3.76 Total: -10.45 kcal Atomic # 8 Polarization: -2.25 SS G_CDS: -3.94 Total: -6.18 kcal Atomic # 14 Polarization: -0.45 SS G_CDS: 2.05 Total: 1.60 kcal Total: -17.33 -3.12 -20.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270476_13915762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.881 kcal (2) G-P(sol) polarization free energy of solvation -17.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds