Wall clock time and date at job start Mon Mar 8 2021 05:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.47165 * 2 1 4 4 C 1.50708 * 109.47056 * 240.00165 * 2 1 3 5 5 C 1.33324 * 125.95139 * 300.01977 * 4 2 1 6 6 N 1.32119 * 114.58201 * 179.97438 * 5 4 2 7 7 C 1.29693 * 116.86173 * 359.97438 * 6 5 4 8 8 N 1.38611 * 124.94769 * 180.26352 * 7 6 5 9 9 C 1.46500 * 119.99873 * 359.69758 * 8 7 6 10 10 H 1.08996 * 112.85085 * 336.19112 * 9 8 7 11 11 C 1.53783 * 113.61448 * 107.50394 * 9 8 7 12 12 C 1.53775 * 87.08321 * 89.11518 * 11 9 8 13 13 H 1.09000 * 113.61503 * 270.88310 * 12 11 9 14 14 C 1.52997 * 113.69320 * 139.99023 * 12 11 9 15 15 O 1.42907 * 109.47176 * 87.46508 * 14 12 11 16 16 C 1.53784 * 113.61251 * 204.99960 * 9 8 7 17 17 S 1.70968 * 110.10264 * 359.97438 * 7 6 5 18 18 H 0.96706 * 113.99704 * 59.99956 * 1 2 3 19 19 H 1.08990 * 109.47265 * 120.00167 * 2 1 3 20 20 H 1.48501 * 109.99777 * 298.68414 * 3 2 1 21 21 H 1.48496 * 109.99448 * 60.00153 * 3 2 1 22 22 H 1.08002 * 122.71009 * 359.97438 * 5 4 2 23 23 H 0.97000 * 120.00159 * 179.69565 * 8 7 6 24 24 H 1.09001 * 113.61264 * 203.66632 * 11 9 8 25 25 H 1.08996 * 113.61284 * 334.56316 * 11 9 8 26 26 H 1.08998 * 109.47176 * 207.46388 * 14 12 11 27 27 H 1.09002 * 109.46974 * 327.46480 * 14 12 11 28 28 H 0.96697 * 114.00154 * 180.02562 * 15 14 12 29 29 H 1.08999 * 113.61664 * 25.43445 * 16 9 8 30 30 H 1.09000 * 113.61451 * 156.33604 * 16 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2306 5 6 1.6832 -1.9787 -1.5583 6 7 2.2374 -2.3721 -2.6913 7 6 2.9415 -1.4937 -3.3352 8 7 3.5901 -1.7234 -4.5385 9 6 3.5128 -3.0419 -5.1723 10 1 3.2982 -3.8408 -4.4625 11 6 2.6210 -3.0720 -6.4248 12 6 3.8761 -2.6991 -7.2312 13 1 4.0330 -1.6243 -7.3226 14 6 3.9869 -3.4315 -8.5699 15 8 3.2891 -2.6940 -9.5756 16 6 4.6971 -3.3478 -6.1043 17 16 2.9467 -0.0089 -2.4877 18 1 -0.3933 0.4417 -0.7651 19 1 1.7924 -0.5138 0.8899 20 1 1.5879 2.4586 -1.2242 21 1 1.5615 2.4678 1.2085 22 1 1.0780 -2.6318 -0.9470 23 1 4.0952 -1.0111 -4.9609 24 1 2.2300 -4.0623 -6.6586 25 1 1.8520 -2.2997 -6.4318 26 1 5.0367 -3.5223 -8.8486 27 1 3.5481 -4.4251 -8.4778 28 1 3.3171 -3.1010 -10.4523 29 1 5.6041 -2.7981 -5.8527 30 1 4.8737 -4.4134 -6.2506 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270476_15704118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:27 Heat of formation + Delta-G solvation = -2.859293 kcal Electronic energy + Delta-G solvation = -15130.671492 eV Core-core repulsion = 12441.382787 eV Total energy + Delta-G solvation = -2689.288705 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 243.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.10942 -40.18976 -38.05456 -37.35565 -35.05643 -31.30366 -28.92332 -26.79917 -26.48369 -24.81879 -23.47070 -21.42622 -20.08492 -19.63543 -18.27387 -18.12220 -17.14081 -16.71870 -16.50429 -16.06499 -15.77318 -15.65718 -15.41057 -15.00888 -14.63518 -13.95696 -13.64892 -13.42610 -13.14576 -12.88670 -12.47472 -12.07233 -11.90959 -11.74626 -11.40805 -11.11549 -10.90511 -10.77409 -10.32288 -10.22710 -8.75948 -5.04681 -0.09202 -0.00241 0.64794 1.24482 1.54141 1.87688 1.94097 2.12826 3.21698 3.36930 3.44915 3.62080 3.69358 3.83214 3.90696 4.14477 4.39243 4.54759 4.57116 4.64083 4.68480 4.70373 4.75632 4.79796 5.01681 5.06204 5.10334 5.34074 5.86318 6.12303 6.42297 6.87614 6.98424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.022 4.022 3 Si 0.724 3.276 4 C -0.305 4.305 5 C 0.103 3.897 6 N -0.577 5.577 7 C 0.315 3.685 8 N -0.669 5.669 9 C 0.133 3.867 10 H 0.094 0.906 11 C -0.146 4.146 12 C -0.111 4.111 13 H 0.089 0.911 14 C 0.080 3.920 15 O -0.600 6.600 16 C -0.123 4.123 17 S 0.115 5.885 18 H 0.386 0.614 19 H 0.136 0.864 20 H -0.269 1.269 21 H -0.273 1.273 22 H 0.179 0.821 23 H 0.423 0.577 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -0.682 -2.450 5.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.134 4.134 3 Si 0.626 3.374 4 C -0.428 4.428 5 C -0.047 4.047 6 N -0.303 5.303 7 C -0.055 4.055 8 N -0.309 5.309 9 C 0.025 3.975 10 H 0.112 0.888 11 C -0.185 4.185 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.003 3.997 15 O -0.408 6.408 16 C -0.161 4.161 17 S 0.365 5.635 18 H 0.235 0.765 19 H 0.154 0.846 20 H -0.194 1.194 21 H -0.199 1.199 22 H 0.196 0.804 23 H 0.262 0.738 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.106 0.894 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.104 0.525 -1.871 5.462 hybrid contribution -1.506 -0.861 -0.730 1.882 sum 3.599 -0.337 -2.601 4.453 Atomic orbital electron populations 1.86589 1.18199 1.80256 1.49980 1.24282 0.82985 1.10338 0.95840 0.94407 0.90559 0.73255 0.79145 1.25647 1.13130 0.99051 1.05010 1.21460 0.97677 0.93747 0.91853 1.66479 1.17974 1.34719 1.11172 1.23939 0.95043 0.93895 0.92624 1.43764 1.54261 1.14440 1.18395 1.21865 0.97623 0.84413 0.93578 0.88837 1.23520 0.96870 1.02290 0.95830 1.22586 0.96896 1.00577 0.92869 0.89296 1.22298 0.96003 0.94063 0.87367 1.86446 1.77807 1.53841 1.22717 1.23314 0.96822 1.03193 0.92792 1.83844 1.50956 1.12289 1.16428 0.76481 0.84613 1.19426 1.19874 0.80365 0.73751 0.88662 0.92979 0.92244 0.92520 0.75490 0.89355 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.61 12.87 -148.98 -1.92 -3.52 16 2 C -0.02 0.00 2.99 71.24 0.21 0.21 16 3 Si 0.72 -0.59 31.05 68.60 2.13 1.54 16 4 C -0.31 -0.67 5.74 24.58 0.14 -0.53 16 5 C 0.10 0.53 11.22 83.54 0.94 1.47 16 6 N -0.58 -4.28 9.83 -202.02 -1.99 -6.26 16 7 C 0.32 1.17 8.09 179.32 1.45 2.62 16 8 N -0.67 0.27 5.42 -327.88 -1.78 -1.51 16 9 C 0.13 -0.12 4.44 45.52 0.20 0.09 16 10 H 0.09 0.22 7.67 -2.39 -0.02 0.20 16 11 C -0.15 -0.01 7.43 31.12 0.23 0.22 16 12 C -0.11 0.28 3.88 -10.27 -0.04 0.24 16 13 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 14 C 0.08 -0.24 6.89 71.98 0.50 0.26 16 15 O -0.60 -0.57 13.66 -148.98 -2.04 -2.61 16 16 C -0.12 0.69 7.39 31.12 0.23 0.92 16 17 S 0.12 0.07 20.57 -56.49 -1.16 -1.10 16 18 H 0.39 -0.77 8.70 -74.05 -0.64 -1.41 16 19 H 0.14 -0.29 7.96 -2.39 -0.02 -0.31 16 20 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 21 H -0.27 -1.40 7.11 99.48 0.71 -0.70 16 22 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 23 H 0.42 -1.94 8.83 -92.71 -0.82 -2.76 16 24 H 0.09 -0.08 7.90 -2.39 -0.02 -0.09 16 25 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.06 -0.27 7.85 -2.39 -0.02 -0.29 16 28 H 0.40 -2.89 9.12 -74.06 -0.68 -3.57 16 29 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.11 -0.88 8.10 -2.39 -0.02 -0.90 16 Total: 0.00 -14.52 272.44 -3.81 -18.32 By element: Atomic # 1 Polarization: -9.44 SS G_CDS: -0.92 Total: -10.36 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 3.86 Total: 5.49 kcal Atomic # 7 Polarization: -4.01 SS G_CDS: -3.76 Total: -7.77 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: -3.95 Total: -6.13 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: 2.13 Total: 1.54 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.16 Total: -1.10 kcal Total: -14.52 -3.81 -18.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270476_15704118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.466 kcal (2) G-P(sol) polarization free energy of solvation -14.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds