Wall clock time and date at job start Mon Mar 8 2021 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95275 * 2 1 4 4 C 1.50700 * 122.70958 * 359.95777 * 3 2 1 5 5 O 1.42891 * 109.47108 * 330.02470 * 4 3 2 6 6 Si 1.86300 * 109.47183 * 210.02186 * 4 3 2 7 7 N 1.32115 * 114.58076 * 179.97438 * 3 2 1 8 8 C 1.29694 * 116.86485 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94841 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00201 * 180.02562 * 9 8 7 11 11 H 1.09005 * 112.84968 * 336.18985 * 10 9 8 12 12 C 1.53776 * 113.62105 * 107.49902 * 10 9 8 13 13 C 1.53780 * 87.08201 * 89.11631 * 12 10 9 14 14 H 1.09000 * 113.61672 * 270.89169 * 13 12 10 15 15 C 1.53005 * 113.61705 * 139.98096 * 13 12 10 16 16 O 1.42901 * 109.46799 * 87.50346 * 15 13 12 17 17 C 1.53785 * 113.61818 * 205.00217 * 10 9 8 18 18 S 1.70958 * 110.10068 * 359.97438 * 8 7 3 19 19 H 1.08991 * 109.47007 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.46802 * 300.02620 * 1 2 3 21 21 H 1.09003 * 109.46759 * 60.02612 * 1 2 3 22 22 H 1.09005 * 109.47156 * 90.02445 * 4 3 2 23 23 H 0.96705 * 114.00220 * 180.02562 * 5 4 3 24 24 H 1.48500 * 109.99921 * 298.68257 * 6 4 3 25 25 H 1.48499 * 109.99882 * 59.99760 * 6 4 3 26 26 H 0.97000 * 120.00085 * 359.97438 * 9 8 7 27 27 H 1.08997 * 113.61993 * 203.66865 * 12 10 9 28 28 H 1.08998 * 113.61344 * 334.57138 * 12 10 9 29 29 H 1.08991 * 109.47376 * 207.50749 * 15 13 12 30 30 H 1.09000 * 109.46857 * 327.50743 * 15 13 12 31 31 H 0.96697 * 114.00130 * 180.02562 * 16 15 13 32 32 H 1.09000 * 113.61267 * 25.42093 * 17 10 9 33 33 H 1.08998 * 113.61970 * 156.24882 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0009 5 8 0.4816 2.5017 -0.6748 6 14 2.9326 3.6144 -0.8795 7 7 3.5851 0.8188 0.0005 8 6 3.9315 -0.4310 0.0005 9 7 5.2384 -0.8927 0.0005 10 6 5.5066 -2.3329 -0.0002 11 1 4.6805 -2.9174 0.4049 12 6 6.0361 -2.8604 -1.3441 13 6 7.4477 -2.5439 -0.8226 14 1 7.7789 -1.5299 -1.0469 15 6 8.4881 -3.6047 -1.1874 16 8 9.0439 -3.3057 -2.4694 17 6 6.8747 -2.7051 0.5954 18 16 2.5413 -1.4260 0.0004 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8903 22 1 1.6091 2.8221 1.0265 23 1 0.0694 3.3757 -0.7139 24 1 4.2371 3.6283 -0.1700 25 1 3.1218 3.1629 -2.2815 26 1 5.9755 -0.2622 0.0001 27 1 5.8555 -3.9244 -1.4972 28 1 5.7400 -2.2525 -2.1989 29 1 9.2809 -3.6084 -0.4395 30 1 8.0124 -4.5850 -1.2173 31 1 9.7123 -3.9385 -2.7657 32 1 7.2556 -1.9718 1.3062 33 1 6.9230 -3.7262 0.9738 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13270476_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:30 Heat of formation + Delta-G solvation = -4.926316 kcal Electronic energy + Delta-G solvation = -17019.103575 eV Core-core repulsion = 14174.187618 eV Total energy + Delta-G solvation = -2844.915957 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.18231 -40.56000 -37.81008 -37.37364 -35.22944 -32.51186 -29.57353 -28.51552 -26.93414 -25.54670 -24.30551 -23.73194 -20.87052 -20.22288 -19.07455 -18.34852 -18.11028 -17.33038 -16.79949 -16.44043 -15.99840 -15.86586 -15.52554 -15.27509 -14.79135 -14.10711 -14.01281 -13.87891 -13.66354 -13.48456 -13.32969 -13.21557 -12.93563 -12.05869 -11.99584 -11.86581 -11.73796 -11.55388 -11.01443 -10.88401 -10.57500 -10.30008 -9.93595 -8.56700 -4.79107 0.08439 0.21295 0.82927 1.42023 1.77611 1.92923 1.98923 2.40438 2.98945 3.14124 3.21759 3.44360 3.57962 3.88683 3.99449 4.13729 4.22806 4.32020 4.40699 4.42251 4.44784 4.48100 4.52120 4.56921 4.86615 4.90499 4.93380 4.96774 5.08006 5.21503 5.43414 5.65469 6.26589 6.59235 6.65675 6.94921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.226 4.226 3 C 0.098 3.902 4 C -0.034 4.034 5 O -0.545 6.545 6 Si 0.712 3.288 7 N -0.549 5.549 8 C 0.320 3.680 9 N -0.677 5.677 10 C 0.125 3.875 11 H 0.098 0.902 12 C -0.148 4.148 13 C -0.111 4.111 14 H 0.098 0.902 15 C 0.085 3.915 16 O -0.573 6.573 17 C -0.135 4.135 18 S 0.105 5.895 19 H 0.056 0.944 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.385 0.615 24 H -0.253 1.253 25 H -0.264 1.264 26 H 0.412 0.588 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.381 0.619 32 H 0.081 0.919 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -1.307 1.914 2.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.349 4.349 3 C -0.031 4.031 4 C -0.147 4.147 5 O -0.351 6.351 6 Si 0.612 3.388 7 N -0.276 5.276 8 C -0.051 4.051 9 N -0.317 5.317 10 C 0.019 3.981 11 H 0.116 0.884 12 C -0.187 4.187 13 C -0.129 4.129 14 H 0.116 0.884 15 C 0.007 3.993 16 O -0.379 6.379 17 C -0.173 4.173 18 S 0.354 5.646 19 H 0.075 0.925 20 H 0.091 0.909 21 H 0.108 0.892 22 H 0.098 0.902 23 H 0.233 0.767 24 H -0.177 1.177 25 H -0.189 1.189 26 H 0.251 0.749 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.228 0.772 32 H 0.100 0.900 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.500 -2.248 1.492 2.744 hybrid contribution 0.547 -0.073 0.297 0.627 sum 1.046 -2.321 1.789 3.112 Atomic orbital electron populations 1.20099 0.86173 1.01394 1.03913 1.25200 1.01559 0.92416 1.15708 1.18904 0.86385 0.95152 1.02681 1.23957 0.93026 0.96207 1.01469 1.86427 1.33923 1.35692 1.79037 0.96220 0.78904 0.84576 0.79139 1.65695 1.17285 1.16871 1.27725 1.23179 0.91778 0.91288 0.98890 1.43569 1.01788 1.06220 1.80167 1.21948 0.98372 0.79806 0.98014 0.88423 1.23597 0.95350 1.02230 0.97515 1.22584 0.94172 1.00377 0.95783 0.88384 1.22175 0.95324 0.96909 0.84914 1.86498 1.60252 1.55483 1.35684 1.23334 0.94076 1.03439 0.96453 1.83919 0.96309 1.10464 1.73951 0.92510 0.90898 0.89166 0.90212 0.76675 1.17745 1.18880 0.74922 0.88522 0.90460 0.93366 0.93257 0.77167 0.90005 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 8.91 36.01 0.32 0.22 16 2 C -0.23 -0.90 6.50 -36.02 -0.23 -1.13 16 3 C 0.10 0.48 5.95 -84.18 -0.50 -0.02 16 4 C -0.03 -0.06 2.93 36.01 0.11 0.04 16 5 O -0.54 -0.12 9.80 -35.23 -0.35 -0.46 16 6 Si 0.71 1.22 32.08 -169.99 -5.45 -4.23 16 7 N -0.55 -3.26 8.95 -11.36 -0.10 -3.36 16 8 C 0.32 1.29 8.24 -87.68 -0.72 0.56 16 9 N -0.68 -1.04 5.42 -55.00 -0.30 -1.34 16 10 C 0.13 -0.09 4.31 -67.12 -0.29 -0.38 16 11 H 0.10 -0.11 7.06 -51.93 -0.37 -0.47 16 12 C -0.15 0.08 7.43 -25.92 -0.19 -0.12 16 13 C -0.11 0.09 3.89 -89.80 -0.35 -0.26 16 14 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 15 C 0.08 -0.10 6.89 37.16 0.26 0.16 16 16 O -0.57 -0.43 13.66 -35.23 -0.48 -0.91 16 17 C -0.13 0.30 7.39 -25.91 -0.19 0.11 16 18 S 0.10 0.29 21.69 -107.50 -2.33 -2.05 16 19 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 20 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 21 H 0.09 0.18 6.74 -51.93 -0.35 -0.17 16 22 H 0.08 0.02 7.96 -51.93 -0.41 -0.40 16 23 H 0.38 -1.90 8.74 45.56 0.40 -1.50 16 24 H -0.25 -1.33 7.11 56.52 0.40 -0.93 16 25 H -0.26 -1.57 7.11 56.52 0.40 -1.17 16 26 H 0.41 0.48 8.82 -40.82 -0.36 0.12 16 27 H 0.10 -0.16 7.90 -51.93 -0.41 -0.57 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.05 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.05 -0.11 7.84 -51.93 -0.41 -0.52 16 31 H 0.38 -1.31 9.12 45.56 0.42 -0.89 16 32 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.10 -0.38 8.10 -51.93 -0.42 -0.80 16 LS Contribution 289.37 15.07 4.36 4.36 Total: 0.00 -8.54 289.37 -10.10 -18.64 By element: Atomic # 1 Polarization: -6.19 SS G_CDS: -3.65 Total: -9.83 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.80 Total: -0.81 kcal Atomic # 7 Polarization: -4.30 SS G_CDS: -0.40 Total: -4.70 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -0.83 Total: -1.37 kcal Atomic # 14 Polarization: 1.22 SS G_CDS: -5.45 Total: -4.23 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.33 Total: -2.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -8.54 -10.10 -18.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270476_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.709 kcal (2) G-P(sol) polarization free energy of solvation -8.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds