Wall clock time and date at job start Mon Mar 8 2021 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95275 * 2 1 4 4 C 1.50700 * 122.70958 * 359.95777 * 3 2 1 5 5 O 1.42891 * 109.47108 * 330.02470 * 4 3 2 6 6 Si 1.86300 * 109.47183 * 210.02186 * 4 3 2 7 7 N 1.32115 * 114.58076 * 179.97438 * 3 2 1 8 8 C 1.29694 * 116.86485 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94841 * 179.97438 * 8 7 3 10 10 C 1.46493 * 120.00201 * 180.02562 * 9 8 7 11 11 H 1.09005 * 112.84968 * 336.18985 * 10 9 8 12 12 C 1.53776 * 113.62105 * 107.49902 * 10 9 8 13 13 C 1.53780 * 87.08201 * 89.11631 * 12 10 9 14 14 H 1.09000 * 113.61672 * 270.89169 * 13 12 10 15 15 C 1.53005 * 113.61705 * 139.98096 * 13 12 10 16 16 O 1.42901 * 109.46799 * 87.50346 * 15 13 12 17 17 C 1.53785 * 113.61818 * 205.00217 * 10 9 8 18 18 S 1.70958 * 110.10068 * 359.97438 * 8 7 3 19 19 H 1.08991 * 109.47007 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.46802 * 300.02620 * 1 2 3 21 21 H 1.09003 * 109.46759 * 60.02612 * 1 2 3 22 22 H 1.09005 * 109.47156 * 90.02445 * 4 3 2 23 23 H 0.96705 * 114.00220 * 180.02562 * 5 4 3 24 24 H 1.48500 * 109.99921 * 298.68257 * 6 4 3 25 25 H 1.48499 * 109.99882 * 59.99760 * 6 4 3 26 26 H 0.97000 * 120.00085 * 359.97438 * 9 8 7 27 27 H 1.08997 * 113.61993 * 203.66865 * 12 10 9 28 28 H 1.08998 * 113.61344 * 334.57138 * 12 10 9 29 29 H 1.08991 * 109.47376 * 207.50749 * 15 13 12 30 30 H 1.09000 * 109.46857 * 327.50743 * 15 13 12 31 31 H 0.96697 * 114.00130 * 180.02562 * 16 15 13 32 32 H 1.09000 * 113.61267 * 25.42093 * 17 10 9 33 33 H 1.08998 * 113.61970 * 156.24882 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0009 5 8 0.4816 2.5017 -0.6748 6 14 2.9326 3.6144 -0.8795 7 7 3.5851 0.8188 0.0005 8 6 3.9315 -0.4310 0.0005 9 7 5.2384 -0.8927 0.0005 10 6 5.5066 -2.3329 -0.0002 11 1 4.6805 -2.9174 0.4049 12 6 6.0361 -2.8604 -1.3441 13 6 7.4477 -2.5439 -0.8226 14 1 7.7789 -1.5299 -1.0469 15 6 8.4881 -3.6047 -1.1874 16 8 9.0439 -3.3057 -2.4694 17 6 6.8747 -2.7051 0.5954 18 16 2.5413 -1.4260 0.0004 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8903 22 1 1.6091 2.8221 1.0265 23 1 0.0694 3.3757 -0.7139 24 1 4.2371 3.6283 -0.1700 25 1 3.1218 3.1629 -2.2815 26 1 5.9755 -0.2622 0.0001 27 1 5.8555 -3.9244 -1.4972 28 1 5.7400 -2.2525 -2.1989 29 1 9.2809 -3.6084 -0.4395 30 1 8.0124 -4.5850 -1.2173 31 1 9.7123 -3.9385 -2.7657 32 1 7.2556 -1.9718 1.3062 33 1 6.9230 -3.7262 0.9738 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270476_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:30 Heat of formation + Delta-G solvation = -7.178067 kcal Electronic energy + Delta-G solvation = -17019.201218 eV Core-core repulsion = 14174.187618 eV Total energy + Delta-G solvation = -2845.013600 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30609 -40.61796 -37.83710 -37.36781 -35.32101 -32.66493 -29.65177 -28.52671 -26.84210 -25.70930 -24.47749 -23.70729 -20.90332 -20.35224 -19.19654 -18.30574 -18.17015 -17.46886 -16.80244 -16.56134 -16.05658 -15.86277 -15.61160 -15.39263 -14.81247 -14.30408 -14.17429 -14.00625 -13.56616 -13.50499 -13.47264 -13.20924 -13.05270 -12.39013 -12.00845 -11.86416 -11.81643 -11.52149 -11.06599 -10.84707 -10.82114 -10.44835 -10.10502 -8.75095 -4.99892 -0.15378 0.00119 0.60714 1.23951 1.63062 1.72192 1.75780 2.18298 3.07362 3.13450 3.29263 3.53420 3.65460 3.92788 3.99576 4.05549 4.23109 4.27163 4.38842 4.41944 4.55329 4.56754 4.65624 4.69276 4.79137 4.85746 4.91372 4.98274 5.02687 5.17149 5.32934 5.59225 6.10929 6.72383 6.83669 6.93819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.242 4.242 3 C 0.069 3.931 4 C -0.032 4.032 5 O -0.551 6.551 6 Si 0.811 3.189 7 N -0.586 5.586 8 C 0.305 3.695 9 N -0.675 5.675 10 C 0.119 3.881 11 H 0.105 0.895 12 C -0.146 4.146 13 C -0.115 4.115 14 H 0.078 0.922 15 C 0.082 3.918 16 O -0.601 6.601 17 C -0.119 4.119 18 S 0.133 5.867 19 H 0.065 0.935 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.101 0.899 23 H 0.408 0.592 24 H -0.305 1.305 25 H -0.325 1.325 26 H 0.411 0.589 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.396 0.604 32 H 0.082 0.918 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 -2.169 2.760 3.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.364 4.364 3 C -0.059 4.059 4 C -0.145 4.145 5 O -0.361 6.361 6 Si 0.720 3.280 7 N -0.314 5.314 8 C -0.066 4.066 9 N -0.315 5.315 10 C 0.014 3.986 11 H 0.123 0.877 12 C -0.185 4.185 13 C -0.134 4.134 14 H 0.096 0.904 15 C 0.004 3.996 16 O -0.410 6.410 17 C -0.157 4.157 18 S 0.381 5.619 19 H 0.084 0.916 20 H 0.100 0.900 21 H 0.106 0.894 22 H 0.119 0.881 23 H 0.260 0.740 24 H -0.234 1.234 25 H -0.255 1.255 26 H 0.249 0.751 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.246 0.754 32 H 0.101 0.899 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.208 -3.103 2.350 3.898 hybrid contribution 0.842 0.153 -0.044 0.857 sum 0.634 -2.949 2.306 3.797 Atomic orbital electron populations 1.20121 0.84750 1.02069 1.04156 1.25590 1.02716 0.92691 1.15439 1.19433 0.86378 0.96874 1.03245 1.23941 0.93513 0.94380 1.02641 1.86384 1.32994 1.37937 1.78811 0.95434 0.76198 0.82630 0.73779 1.65760 1.18283 1.18135 1.29265 1.23514 0.92946 0.91469 0.98677 1.43784 1.01056 1.07232 1.79379 1.22140 0.99591 0.78574 0.98338 0.87670 1.23612 0.95666 1.02693 0.96566 1.22571 0.94213 0.99651 0.96924 0.90352 1.22287 0.95538 0.97258 0.84471 1.86455 1.61091 1.56760 1.36692 1.23304 0.92180 1.04693 0.95484 1.83671 0.95139 1.09528 1.73552 0.91616 0.90042 0.89393 0.88094 0.73967 1.23361 1.25472 0.75095 0.86923 0.92907 0.92334 0.91690 0.75385 0.89907 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.15 8.91 71.24 0.63 0.48 16 2 C -0.24 -1.97 6.50 24.58 0.16 -1.81 16 3 C 0.07 0.74 5.95 41.41 0.25 0.98 16 4 C -0.03 -0.12 2.93 71.24 0.21 0.09 16 5 O -0.55 0.20 9.80 -148.98 -1.46 -1.26 16 6 Si 0.81 3.91 32.08 68.60 2.20 6.11 16 7 N -0.59 -7.95 8.95 -189.86 -1.70 -9.65 16 8 C 0.30 2.84 8.24 179.32 1.48 4.32 16 9 N -0.68 -2.95 5.42 -327.91 -1.78 -4.73 16 10 C 0.12 -0.15 4.31 45.52 0.20 0.05 16 11 H 0.11 -0.29 7.06 -2.38 -0.02 -0.30 16 12 C -0.15 0.09 7.43 31.12 0.23 0.32 16 13 C -0.12 0.15 3.89 -10.26 -0.04 0.11 16 14 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 15 C 0.08 -0.22 6.89 71.98 0.50 0.27 16 16 O -0.60 -1.08 13.66 -148.98 -2.03 -3.11 16 17 C -0.12 0.61 7.39 31.12 0.23 0.84 16 18 S 0.13 0.76 21.69 -56.49 -1.23 -0.46 16 19 H 0.06 0.05 8.14 -2.39 -0.02 0.04 16 20 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 21 H 0.09 0.31 6.74 -2.39 -0.02 0.29 16 22 H 0.10 -0.06 7.96 -2.38 -0.02 -0.08 16 23 H 0.41 -4.66 8.74 -74.05 -0.65 -5.31 16 24 H -0.30 -4.05 7.11 99.48 0.71 -3.34 16 25 H -0.32 -4.87 7.11 99.48 0.71 -4.16 16 26 H 0.41 1.75 8.82 -92.71 -0.82 0.93 16 27 H 0.11 -0.45 7.90 -2.39 -0.02 -0.47 16 28 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.06 -0.39 7.84 -2.39 -0.02 -0.41 16 31 H 0.40 -2.69 9.12 -74.06 -0.68 -3.36 16 32 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.13 -1.20 8.10 -2.39 -0.02 -1.22 16 Total: 0.00 -21.97 289.37 -3.11 -25.07 By element: Atomic # 1 Polarization: -16.68 SS G_CDS: -0.95 Total: -17.63 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 3.84 Total: 5.65 kcal Atomic # 7 Polarization: -10.90 SS G_CDS: -3.48 Total: -14.37 kcal Atomic # 8 Polarization: -0.88 SS G_CDS: -3.50 Total: -4.37 kcal Atomic # 14 Polarization: 3.91 SS G_CDS: 2.20 Total: 6.11 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.23 Total: -0.46 kcal Total: -21.97 -3.11 -25.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270476_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.896 kcal (2) G-P(sol) polarization free energy of solvation -21.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds