Wall clock time and date at job start Mon Mar 8 2021 05:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.46966 * 2 1 4 4 C 1.50700 * 109.46935 * 119.99959 * 2 1 3 5 5 C 1.37980 * 120.32692 * 244.99553 * 4 2 1 6 6 N 1.32009 * 120.90323 * 179.97438 * 5 4 2 7 7 C 1.32340 * 121.64386 * 0.02562 * 6 5 4 8 8 N 1.39145 * 119.71542 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00239 * 359.71915 * 8 7 6 10 10 H 1.09006 * 112.85058 * 23.81066 * 9 8 7 11 11 C 1.53784 * 113.61676 * 155.00055 * 9 8 7 12 12 C 1.53784 * 87.07744 * 89.11905 * 11 9 8 13 13 H 1.08997 * 113.61635 * 270.80023 * 12 11 9 14 14 C 1.53003 * 113.60985 * 139.98430 * 12 11 9 15 15 O 1.42906 * 109.46901 * 175.00018 * 14 12 11 16 16 C 1.53773 * 87.08163 * 25.43423 * 12 11 9 17 17 C 1.39344 * 120.56448 * 0.25402 * 7 6 5 18 18 F 1.35104 * 120.46930 * 179.72542 * 17 7 6 19 19 C 1.38441 * 119.05394 * 359.49100 * 17 7 6 20 20 H 0.96697 * 113.99928 * 299.99975 * 1 2 3 21 21 H 1.08997 * 109.46851 * 239.99488 * 2 1 3 22 22 H 1.48503 * 109.99587 * 178.67895 * 3 2 1 23 23 H 1.48497 * 110.00157 * 299.99938 * 3 2 1 24 24 H 1.08001 * 119.54815 * 0.02562 * 5 4 2 25 25 H 0.97005 * 119.99811 * 179.97438 * 8 7 6 26 26 H 1.08993 * 113.61464 * 203.66599 * 11 9 8 27 27 H 1.08999 * 113.61239 * 334.49248 * 11 9 8 28 28 H 1.08999 * 109.47296 * 294.99288 * 14 12 11 29 29 H 1.08999 * 109.47013 * 55.00139 * 14 12 11 30 30 H 0.96695 * 113.99774 * 179.97438 * 15 14 12 31 31 H 1.09005 * 113.61643 * 220.01654 * 16 12 11 32 32 H 1.09006 * 113.61773 * 89.11564 * 16 12 11 33 33 H 1.08005 * 120.75486 * 180.24348 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6381 -0.0202 2.1937 6 7 3.0830 -0.6310 3.2762 7 6 2.8719 -1.9212 3.4816 8 7 3.3595 -2.5245 4.6368 9 6 4.1081 -1.7333 5.6164 10 1 3.8780 -0.6690 5.5656 11 6 4.0552 -2.3075 7.0420 12 6 5.3020 -3.1286 6.6730 13 1 5.0715 -4.0994 6.2343 14 6 6.3339 -3.2155 7.7993 15 8 7.3950 -4.0886 7.4068 16 6 5.6150 -2.0395 5.6335 17 6 2.1707 -2.6819 2.5482 18 9 1.9611 -4.0001 2.7572 19 6 1.6876 -2.0666 1.4060 20 1 -0.3933 0.4417 0.7650 21 1 1.7923 -0.5139 -0.8899 22 1 3.5346 1.7702 0.0322 23 1 1.5615 2.4679 -1.2085 24 1 2.8294 1.0344 2.0606 25 1 3.2069 -3.4699 4.7917 26 1 4.2358 -1.5647 7.8189 27 1 3.1716 -2.9159 7.2351 28 1 6.7362 -2.2228 8.0010 29 1 5.8576 -3.6044 8.6993 30 1 8.0873 -4.1910 8.0741 31 1 5.9914 -2.4326 4.6890 32 1 6.2221 -1.2233 6.0254 33 1 1.1371 -2.6291 0.6664 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270476_17656566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:32 Heat of formation + Delta-G solvation = -54.890355 kcal Electronic energy + Delta-G solvation = -18695.893814 eV Core-core repulsion = 15445.742651 eV Total energy + Delta-G solvation = -3250.151163 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.99625 -41.55541 -40.42048 -38.00198 -37.32826 -35.29146 -33.23196 -31.35007 -28.77832 -26.74709 -26.37117 -25.18965 -23.23230 -22.95722 -20.40325 -19.46633 -18.47913 -18.32763 -18.16346 -17.52266 -17.05971 -16.60975 -16.25782 -16.00018 -15.74756 -15.58149 -15.40635 -15.00429 -14.52337 -14.33690 -14.07913 -13.60769 -13.57847 -13.36463 -13.03981 -12.56776 -12.16193 -11.93046 -11.76449 -11.38832 -11.14305 -10.79736 -10.73744 -10.68905 -10.41529 -8.80372 -4.97189 -0.11387 0.06876 1.31937 1.67595 1.91166 2.00902 2.50458 2.98945 3.21559 3.23842 3.47151 3.52317 3.66546 3.69464 3.83498 3.84924 3.96378 4.13547 4.39018 4.40990 4.45883 4.55015 4.63727 4.69379 4.76252 4.76827 4.84268 4.96044 5.02887 5.11578 5.23963 5.44706 5.98032 6.14364 6.79724 6.87160 6.91367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.060 4.060 3 Si 0.777 3.223 4 C -0.206 4.206 5 C 0.150 3.850 6 N -0.524 5.524 7 C 0.383 3.617 8 N -0.699 5.699 9 C 0.131 3.869 10 H 0.108 0.892 11 C -0.126 4.126 12 C -0.115 4.115 13 H 0.080 0.920 14 C 0.081 3.919 15 O -0.600 6.600 16 C -0.145 4.145 17 C -0.040 4.040 18 F -0.142 7.142 19 C -0.040 4.040 20 H 0.396 0.604 21 H 0.110 0.890 22 H -0.282 1.282 23 H -0.296 1.296 24 H 0.187 0.813 25 H 0.414 0.586 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.396 0.604 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 3.482 4.707 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.170 4.170 3 Si 0.682 3.318 4 C -0.212 4.212 5 C -0.007 4.007 6 N -0.241 5.241 7 C 0.145 3.855 8 N -0.331 5.331 9 C 0.026 3.974 10 H 0.126 0.874 11 C -0.164 4.164 12 C -0.133 4.133 13 H 0.098 0.902 14 C 0.004 3.996 15 O -0.409 6.409 16 C -0.184 4.184 17 C -0.066 4.066 18 F -0.121 7.121 19 C -0.067 4.067 20 H 0.246 0.754 21 H 0.128 0.872 22 H -0.208 1.208 23 H -0.224 1.224 24 H 0.204 0.796 25 H 0.251 0.749 26 H 0.135 0.865 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.245 0.755 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.439 4.238 3.996 5.842 hybrid contribution -0.014 -2.041 -0.417 2.083 sum 0.425 2.198 3.579 4.221 Atomic orbital electron populations 1.86481 1.17179 1.82168 1.50541 1.25012 0.85262 1.10734 0.95986 0.93832 0.77935 0.74659 0.85375 1.21011 1.05465 0.94241 1.00438 1.22731 0.90766 1.00239 0.86975 1.67339 1.25361 1.07246 1.24138 1.18548 0.90503 0.89219 0.87198 1.44328 1.58201 1.12062 1.18496 1.21849 0.90961 0.96627 0.87995 0.87407 1.23321 0.97136 0.99786 0.96136 1.22587 0.95828 0.98358 0.96575 0.90193 1.22302 0.87595 0.93418 0.96315 1.86453 1.36834 1.69206 1.48408 1.23520 0.96914 0.99033 0.98886 1.18159 1.09965 0.79302 0.99211 1.91465 1.93917 1.31653 1.95073 1.21447 0.95306 0.95043 0.94853 0.75371 0.87241 1.20842 1.22412 0.79632 0.74861 0.86507 0.90184 0.92090 0.92464 0.75482 0.93291 0.88080 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.80 12.84 -148.98 -1.91 -1.12 16 2 C -0.06 0.14 2.82 71.24 0.20 0.34 16 3 Si 0.78 -3.35 29.83 68.60 2.05 -1.30 16 4 C -0.21 0.09 5.36 -19.77 -0.11 -0.02 16 5 C 0.15 -0.09 9.84 84.61 0.83 0.74 16 6 N -0.52 -1.85 9.13 -193.03 -1.76 -3.62 16 7 C 0.38 1.73 7.49 133.08 1.00 2.73 16 8 N -0.70 -1.31 5.41 -321.78 -1.74 -3.06 16 9 C 0.13 -0.09 4.36 45.52 0.20 0.11 16 10 H 0.11 0.00 7.40 -2.38 -0.02 -0.02 16 11 C -0.13 0.55 7.39 31.12 0.23 0.78 16 12 C -0.11 0.11 3.88 -10.27 -0.04 0.07 16 13 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 14 C 0.08 -0.16 6.88 71.98 0.50 0.33 16 15 O -0.60 -1.21 13.66 -148.98 -2.04 -3.25 16 16 C -0.14 -0.05 7.43 31.12 0.23 0.18 16 17 C -0.04 -0.20 7.35 22.58 0.17 -0.03 16 18 F -0.14 -0.95 16.65 44.97 0.75 -0.20 16 19 C -0.04 -0.10 9.82 22.48 0.22 0.13 16 20 H 0.40 -3.77 8.70 -74.06 -0.64 -4.42 16 21 H 0.11 -0.14 7.96 -2.39 -0.02 -0.16 16 22 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 23 H -0.30 -1.01 7.11 99.48 0.71 -0.30 16 24 H 0.19 -1.20 4.91 -2.91 -0.01 -1.22 16 25 H 0.41 0.31 8.17 -92.70 -0.76 -0.45 16 26 H 0.12 -0.90 8.10 -2.39 -0.02 -0.92 16 27 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.06 -0.28 7.84 -2.39 -0.02 -0.30 16 29 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.40 -2.58 9.12 -74.06 -0.68 -3.26 16 31 H 0.05 0.24 8.14 -2.38 -0.02 0.23 16 32 H 0.10 -0.17 7.90 -2.38 -0.02 -0.19 16 33 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 Total: 0.00 -15.92 285.08 -2.10 -18.02 By element: Atomic # 1 Polarization: -9.96 SS G_CDS: -0.87 Total: -10.84 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 3.43 Total: 5.35 kcal Atomic # 7 Polarization: -3.17 SS G_CDS: -3.50 Total: -6.67 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -3.95 Total: -4.37 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.75 Total: -0.20 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: 2.05 Total: -1.30 kcal Total: -15.92 -2.10 -18.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270476_17656566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.866 kcal (2) G-P(sol) polarization free energy of solvation -15.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds