Wall clock time and date at job start Mon Mar 8 2021 05:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.46982 * 2 1 4 4 C 1.50700 * 109.47436 * 239.99514 * 2 1 3 5 5 C 1.38605 * 120.72082 * 300.00543 * 4 2 1 6 6 N 1.32277 * 119.19521 * 179.97438 * 5 4 2 7 7 C 1.32495 * 120.74091 * 359.97438 * 6 5 4 8 8 N 1.38406 * 119.21633 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00029 * 180.02562 * 8 7 6 10 10 H 1.09004 * 112.84889 * 336.20059 * 9 8 7 11 11 C 1.53957 * 113.66891 * 107.43961 * 9 8 7 12 12 C 1.53781 * 87.01759 * 139.93434 * 11 9 8 13 13 C 1.53002 * 113.61645 * 89.23307 * 12 11 9 14 14 O 1.42897 * 109.47001 * 80.85861 * 13 12 11 15 15 C 1.50706 * 113.61383 * 220.05254 * 12 11 9 16 16 C 1.38233 * 120.00109 * 98.86122 * 15 12 11 17 17 C 1.38238 * 119.99754 * 179.76611 * 16 15 12 18 18 C 1.38234 * 120.00016 * 0.50732 * 17 16 15 19 19 C 1.38238 * 120.00063 * 359.74632 * 18 17 16 20 20 C 1.38235 * 120.00108 * 0.02562 * 19 18 17 21 21 C 1.53783 * 113.61536 * 205.00466 * 9 8 7 22 22 N 1.32496 * 121.56571 * 0.28791 * 7 6 5 23 23 C 1.32279 * 120.73990 * 359.43467 * 22 7 6 24 24 H 0.96695 * 114.00023 * 60.00671 * 1 2 3 25 25 H 1.09008 * 109.46719 * 119.99660 * 2 1 3 26 26 H 1.48499 * 110.00198 * 60.00019 * 3 2 1 27 27 H 1.48498 * 109.99922 * 181.31719 * 3 2 1 28 28 H 1.07999 * 120.39937 * 359.97438 * 5 4 2 29 29 H 0.97001 * 119.99821 * 0.02562 * 8 7 6 30 30 H 1.08998 * 113.61028 * 25.41420 * 11 9 8 31 31 H 1.08993 * 113.66971 * 254.46028 * 11 9 8 32 32 H 1.08999 * 109.47105 * 200.86347 * 13 12 11 33 33 H 1.09000 * 109.46611 * 320.86221 * 13 12 11 34 34 H 0.96702 * 114.00077 * 180.02562 * 14 13 12 35 35 H 1.08004 * 119.99934 * 0.02562 * 16 15 12 36 36 H 1.07999 * 119.99924 * 180.23621 * 17 16 15 37 37 H 1.08001 * 120.00318 * 179.72031 * 18 17 16 38 38 H 1.08000 * 120.00578 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.00165 * 179.97438 * 20 19 18 40 40 H 1.08997 * 113.61737 * 105.46721 * 21 9 8 41 41 H 1.08998 * 113.68520 * 334.57240 * 21 9 8 42 42 H 1.07999 * 120.40158 * 180.30154 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6057 -2.0372 -1.4645 6 7 2.0627 -2.6312 -2.5545 7 6 2.8227 -1.9721 -3.4168 8 7 3.2833 -2.6243 -4.5474 9 6 4.1251 -1.9123 -5.5119 10 1 3.9891 -0.8314 -5.4756 11 6 5.6012 -2.3493 -5.4849 12 6 5.5755 -2.2488 -7.0192 13 6 5.9432 -0.8612 -7.5488 14 8 7.3647 -0.7161 -7.5577 15 6 6.3283 -3.3570 -7.7094 16 6 5.6442 -4.4461 -8.2162 17 6 6.3343 -5.4602 -8.8535 18 6 7.7096 -5.3903 -8.9749 19 6 8.3942 -4.3037 -8.4635 20 6 7.7037 -3.2873 -7.8303 21 6 4.0597 -2.4939 -6.9340 22 7 3.1564 -0.7051 -3.2200 23 6 2.7282 -0.0510 -2.1530 24 1 -0.3933 0.4416 -0.7651 25 1 1.7923 -0.5138 0.8901 26 1 1.5614 2.4679 1.2085 27 1 3.5345 1.7703 -0.0321 28 1 0.9863 -2.5795 -0.7654 29 1 3.0486 -3.5529 -4.7010 30 1 5.7493 -3.3642 -5.1162 31 1 6.2634 -1.6248 -5.0109 32 1 5.5597 -0.7460 -8.5626 33 1 5.5042 -0.0988 -6.9054 34 1 7.6705 0.1420 -7.8822 35 1 4.5702 -4.5026 -8.1178 36 1 5.7995 -6.3093 -9.2528 37 1 8.2492 -6.1848 -9.4688 38 1 9.4687 -4.2492 -8.5578 39 1 8.2386 -2.4386 -7.4304 40 1 3.4794 -1.8861 -7.6281 41 1 3.7857 -3.5485 -6.9636 42 1 2.9996 0.9832 -2.0005 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270512_12175864.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:35 Heat of formation + Delta-G solvation = 45.905182 kcal Electronic energy + Delta-G solvation = -25460.571387 eV Core-core repulsion = 21794.839311 eV Total energy + Delta-G solvation = -3665.732076 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 314.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19917 -41.52871 -39.19355 -38.04067 -37.29322 -35.58959 -34.73558 -32.56441 -31.75504 -31.34657 -28.29668 -26.96069 -26.49962 -25.92038 -24.54022 -23.34998 -23.15431 -22.15366 -19.94715 -19.25467 -18.91581 -18.30899 -18.00173 -17.56658 -16.72628 -16.57628 -16.28679 -16.02619 -15.84998 -15.71462 -15.55503 -15.47447 -15.25384 -14.57947 -14.49195 -14.21126 -14.06520 -13.62788 -13.48931 -13.37818 -13.18614 -13.08403 -12.37518 -12.26241 -12.20661 -11.92755 -11.83960 -11.76201 -11.66430 -11.35701 -11.13206 -10.72699 -10.53207 -10.04593 -9.76791 -9.55855 -9.08314 -4.98967 0.04334 0.12874 0.46873 0.56009 1.32884 1.64433 1.82727 1.99554 2.76653 2.84818 3.11671 3.16971 3.44754 3.52550 3.56774 3.65613 3.70967 3.75508 3.79505 3.89998 4.03666 4.15691 4.21926 4.25594 4.39353 4.41211 4.54452 4.56155 4.61186 4.66433 4.75182 4.76053 4.81606 4.82938 4.98660 5.04039 5.06831 5.18545 5.28655 5.36168 5.63157 5.71739 5.76870 5.79649 6.02314 6.17889 6.39717 6.79502 6.93415 7.25753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.048 4.048 3 Si 0.771 3.229 4 C -0.287 4.287 5 C 0.212 3.788 6 N -0.591 5.591 7 C 0.552 3.448 8 N -0.680 5.680 9 C 0.146 3.854 10 H 0.121 0.879 11 C -0.132 4.132 12 C -0.036 4.036 13 C 0.100 3.900 14 O -0.581 6.581 15 C -0.074 4.074 16 C -0.131 4.131 17 C -0.135 4.135 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.127 4.127 22 N -0.575 5.575 23 C 0.194 3.806 24 H 0.395 0.605 25 H 0.112 0.888 26 H -0.296 1.296 27 H -0.283 1.283 28 H 0.181 0.819 29 H 0.418 0.582 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.393 0.607 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 3.638 -3.111 5.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.159 4.159 3 Si 0.676 3.324 4 C -0.296 4.296 5 C 0.044 3.956 6 N -0.314 5.314 7 C 0.196 3.804 8 N -0.316 5.316 9 C 0.040 3.960 10 H 0.139 0.861 11 C -0.171 4.171 12 C -0.037 4.037 13 C 0.023 3.977 14 O -0.390 6.390 15 C -0.074 4.074 16 C -0.148 4.148 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.129 4.129 21 C -0.165 4.165 22 N -0.298 5.298 23 C 0.027 3.973 24 H 0.245 0.755 25 H 0.130 0.870 26 H -0.224 1.224 27 H -0.210 1.210 28 H 0.198 0.802 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.244 0.756 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.158 0.842 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.762 2.925 -2.899 4.188 hybrid contribution 0.013 -0.277 0.775 0.823 sum -0.749 2.648 -2.124 3.477 Atomic orbital electron populations 1.86476 1.17160 1.82083 1.50471 1.24814 0.85174 1.10189 0.95772 0.93940 0.77842 0.75094 0.85477 1.21770 1.07573 0.98051 1.02168 1.23120 0.90386 0.91301 0.90754 1.68008 1.16971 1.39952 1.06443 1.19683 0.87055 0.86067 0.87614 1.44269 1.53438 1.14582 1.19285 1.22584 0.88378 0.98072 0.86956 0.86134 1.23526 0.97248 1.01824 0.94520 1.20530 0.95123 0.93303 0.94765 1.21927 0.81865 0.93910 1.00018 1.86424 1.21456 1.41555 1.89540 1.19635 0.93727 0.95251 0.98797 1.21403 1.00870 0.93865 0.98679 1.21400 0.94630 0.99508 0.99775 1.21436 0.95064 0.98675 1.00282 1.21458 1.00619 0.94705 0.99159 1.21582 0.94504 0.98618 0.98161 1.23533 0.93945 1.03389 0.95668 1.67934 1.28583 1.08572 1.24662 1.23194 0.88083 0.99686 0.86370 0.75514 0.87047 1.22415 1.20967 0.80229 0.74399 0.90700 0.91398 0.92417 0.91605 0.75599 0.84263 0.84737 0.85150 0.85502 0.84212 0.88518 0.87737 0.79529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.35 12.79 -148.98 -1.90 -0.56 16 2 C -0.05 0.14 2.85 71.24 0.20 0.35 16 3 Si 0.77 -3.52 29.87 68.60 2.05 -1.47 16 4 C -0.29 0.18 5.40 -19.69 -0.11 0.08 16 5 C 0.21 0.49 10.92 84.71 0.93 1.42 16 6 N -0.59 -3.57 10.46 -197.98 -2.07 -5.64 16 7 C 0.55 2.86 8.43 261.48 2.20 5.06 16 8 N -0.68 -0.78 5.51 -327.64 -1.80 -2.59 16 9 C 0.15 -0.22 3.90 45.58 0.18 -0.04 16 10 H 0.12 -0.11 6.87 -2.38 -0.02 -0.13 16 11 C -0.13 -0.11 7.01 31.18 0.22 0.11 16 12 C -0.04 0.04 1.04 -52.40 -0.05 -0.01 16 13 C 0.10 -0.31 6.36 71.98 0.46 0.15 16 14 O -0.58 0.88 10.19 -148.98 -1.52 -0.63 16 15 C -0.07 -0.23 5.02 -19.86 -0.10 -0.33 16 16 C -0.13 -0.26 9.19 22.27 0.20 -0.06 16 17 C -0.14 -0.37 10.05 22.27 0.22 -0.15 16 18 C -0.14 -0.52 10.05 22.27 0.22 -0.30 16 19 C -0.14 -0.70 10.05 22.27 0.22 -0.47 16 20 C -0.11 -0.60 8.85 22.27 0.20 -0.40 16 21 C -0.13 0.55 6.42 31.12 0.20 0.75 16 22 N -0.57 -2.28 9.13 -197.98 -1.81 -4.08 16 23 C 0.19 -0.04 9.92 84.71 0.84 0.80 16 24 H 0.39 -3.97 8.70 -74.06 -0.64 -4.61 16 25 H 0.11 -0.25 7.96 -2.38 -0.02 -0.27 16 26 H -0.30 -0.95 7.11 99.48 0.71 -0.25 16 27 H -0.28 -0.03 7.11 99.48 0.71 0.68 16 28 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 29 H 0.42 -0.27 8.84 -92.71 -0.82 -1.09 16 30 H 0.07 0.24 8.09 -2.39 -0.02 0.23 16 31 H 0.07 0.21 8.10 -2.39 -0.02 0.19 16 32 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.07 -0.36 7.34 -2.39 -0.02 -0.38 16 34 H 0.39 -3.64 9.12 -74.06 -0.68 -4.32 16 35 H 0.14 -0.34 5.79 -2.91 -0.02 -0.36 16 36 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 37 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.13 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.14 0.80 5.57 -2.91 -0.02 0.78 16 40 H 0.10 -0.64 8.10 -2.39 -0.02 -0.66 16 41 H 0.10 -0.56 5.96 -2.39 -0.01 -0.58 16 42 H 0.19 -1.10 5.04 -2.91 -0.01 -1.12 16 Total: 0.00 -18.24 343.47 -2.03 -20.27 By element: Atomic # 1 Polarization: -11.23 SS G_CDS: -1.01 Total: -12.24 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.04 Total: 6.95 kcal Atomic # 7 Polarization: -6.63 SS G_CDS: -5.68 Total: -12.31 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: -3.42 Total: -1.19 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.05 Total: -1.47 kcal Total: -18.24 -2.03 -20.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_12175864.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.172 kcal (2) G-P(sol) polarization free energy of solvation -18.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds