Wall clock time and date at job start Mon Mar 8 2021 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.38023 * 120.33856 * 119.99650 * 4 2 1 6 6 N 1.31967 * 120.85956 * 179.97438 * 5 4 2 7 7 C 1.32398 * 121.62343 * 359.97438 * 6 5 4 8 8 N 1.38996 * 119.71055 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00547 * 179.97438 * 8 7 6 10 10 H 1.09003 * 112.84312 * 25.33402 * 9 8 7 11 11 C 1.53781 * 113.61501 * 156.52567 * 9 8 7 12 12 C 1.53785 * 87.07733 * 139.98242 * 11 9 8 13 13 C 1.53007 * 113.61202 * 89.20296 * 12 11 9 14 14 O 1.42899 * 109.46624 * 179.97438 * 13 12 11 15 15 C 1.50700 * 113.61404 * 220.01971 * 12 11 9 16 16 C 1.38234 * 119.99826 * 359.72658 * 15 12 11 17 17 C 1.38233 * 119.99942 * 179.76905 * 16 15 12 18 18 C 1.38242 * 119.99902 * 0.50271 * 17 16 15 19 19 C 1.38239 * 119.99796 * 359.75616 * 18 17 16 20 20 C 1.38233 * 119.99978 * 180.02562 * 15 12 11 21 21 C 1.53778 * 113.61629 * 254.13665 * 9 8 7 22 22 C 1.39144 * 120.58441 * 0.02562 * 7 6 5 23 23 C 1.38294 * 119.09869 * 359.74634 * 22 7 6 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 26 26 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 27 27 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 28 28 H 1.07997 * 119.56815 * 359.97438 * 5 4 2 29 29 H 0.97004 * 119.99917 * 359.97438 * 8 7 6 30 30 H 1.08992 * 113.61503 * 254.53294 * 11 9 8 31 31 H 1.08997 * 113.61063 * 25.43633 * 11 9 8 32 32 H 1.08998 * 109.46931 * 299.99641 * 13 12 11 33 33 H 1.08994 * 109.47200 * 59.99706 * 13 12 11 34 34 H 0.96704 * 113.99202 * 179.97438 * 14 13 12 35 35 H 1.07999 * 120.00446 * 0.02562 * 16 15 12 36 36 H 1.07996 * 120.00387 * 180.23157 * 17 16 15 37 37 H 1.07999 * 120.00365 * 179.72041 * 18 17 16 38 38 H 1.07994 * 119.99750 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.00054 * 0.02562 * 20 15 12 40 40 H 1.08998 * 113.61575 * 334.56787 * 21 9 8 41 41 H 1.09006 * 113.61443 * 105.46716 * 21 9 8 42 42 H 1.08001 * 120.44647 * 180.02562 * 22 7 6 43 43 H 1.08004 * 120.74932 * 180.25237 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7252 -0.0463 -2.1436 6 7 3.1712 -0.6584 -3.2243 7 6 2.8784 -1.9250 -3.4753 8 7 3.3691 -2.5304 -4.6263 9 6 3.0497 -3.9317 -4.9101 10 1 2.1217 -4.2577 -4.4403 11 6 3.1463 -4.2957 -6.4011 12 6 3.7793 -5.6243 -5.9548 13 6 2.7577 -6.7340 -5.6978 14 8 3.4383 -7.9228 -5.2906 15 6 4.9223 -6.0721 -6.8289 16 6 5.3020 -5.3071 -7.9158 17 6 6.3536 -5.7154 -8.7148 18 6 7.0187 -6.8941 -8.4330 19 6 6.6354 -7.6618 -7.3492 20 6 5.5870 -7.2510 -6.5474 21 6 4.2283 -4.8916 -4.6776 22 6 2.0830 -2.6552 -2.5977 23 6 1.6050 -2.0416 -1.4542 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5613 2.4680 1.2084 27 1 3.5344 1.7705 -0.0322 28 1 2.9848 0.9878 -1.9714 29 1 3.9231 -2.0250 -5.2416 30 1 2.1771 -4.4147 -6.8852 31 1 3.8259 -3.6555 -6.9636 32 1 2.0710 -6.4206 -4.9115 33 1 2.1978 -6.9313 -6.6119 34 1 2.8511 -8.6696 -5.1097 35 1 4.7799 -4.3883 -8.1384 36 1 6.6527 -5.1158 -9.5618 37 1 7.8373 -7.2154 -9.0599 38 1 7.1548 -8.5828 -7.1293 39 1 5.2869 -7.8514 -5.7012 40 1 5.2043 -4.4146 -4.7680 41 1 4.1313 -5.4909 -3.7722 42 1 1.8459 -3.6883 -2.8045 43 1 0.9887 -2.5844 -0.7527 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13270512_13915762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:40 Heat of formation + Delta-G solvation = 28.162289 kcal Electronic energy + Delta-G solvation = -25307.370104 eV Core-core repulsion = 21706.294550 eV Total energy + Delta-G solvation = -3601.075555 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95404 -41.13453 -39.18332 -37.97743 -37.41389 -35.47573 -33.38770 -32.06477 -31.70479 -30.95322 -28.34926 -27.07428 -26.31062 -25.06210 -24.41154 -23.23874 -22.88402 -21.85829 -19.82573 -19.02393 -18.50561 -18.42936 -17.86519 -17.23508 -16.72491 -16.45883 -16.25671 -16.04087 -15.93821 -15.68817 -15.41289 -15.24515 -15.10652 -14.50651 -14.25223 -14.14577 -14.02420 -13.69703 -13.54285 -13.40109 -13.33179 -13.15221 -12.46647 -12.42955 -12.20275 -11.97807 -11.89974 -11.64387 -11.44748 -11.08922 -10.89969 -10.71149 -10.37875 -10.36499 -9.70044 -9.50601 -8.68864 -5.02379 0.25463 0.43882 0.51911 0.63196 1.32303 1.64213 1.99292 2.06564 2.76329 2.86621 3.01734 3.30827 3.41506 3.48729 3.57894 3.59500 3.75550 3.79317 3.85043 3.97917 4.06812 4.13114 4.19699 4.22807 4.31791 4.34769 4.37171 4.48185 4.53678 4.57335 4.65497 4.70682 4.74024 4.84027 4.89128 4.93131 5.00826 5.06613 5.19676 5.32790 5.33612 5.53243 5.68001 5.78803 5.83243 5.99825 6.21908 6.52730 6.55600 6.59889 7.16956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.052 4.052 3 Si 0.682 3.318 4 C -0.236 4.236 5 C 0.156 3.844 6 N -0.540 5.540 7 C 0.409 3.591 8 N -0.710 5.710 9 C 0.130 3.870 10 H 0.111 0.889 11 C -0.135 4.135 12 C -0.039 4.039 13 C 0.101 3.899 14 O -0.562 6.562 15 C -0.069 4.069 16 C -0.123 4.123 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.127 4.127 20 C -0.096 4.096 21 C -0.135 4.135 22 C -0.239 4.239 23 C -0.005 4.005 24 H 0.378 0.622 25 H 0.112 0.888 26 H -0.253 1.253 27 H -0.256 1.256 28 H 0.155 0.845 29 H 0.407 0.593 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.378 0.622 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -1.341 -2.463 3.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.164 4.164 3 Si 0.584 3.416 4 C -0.242 4.242 5 C -0.001 4.001 6 N -0.256 5.256 7 C 0.173 3.827 8 N -0.341 5.341 9 C 0.024 3.976 10 H 0.128 0.872 11 C -0.173 4.173 12 C -0.039 4.039 13 C 0.023 3.977 14 O -0.369 6.369 15 C -0.069 4.069 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.114 4.114 21 C -0.174 4.174 22 C -0.264 4.264 23 C -0.031 4.031 24 H 0.226 0.774 25 H 0.129 0.871 26 H -0.178 1.178 27 H -0.181 1.181 28 H 0.171 0.829 29 H 0.243 0.757 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.227 0.773 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.164 0.836 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.150 0.850 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.086 -0.401 -2.174 2.463 hybrid contribution -0.579 -1.275 0.430 1.464 sum -1.665 -1.676 -1.744 2.936 Atomic orbital electron populations 1.86488 1.17360 1.81677 1.49269 1.24776 0.84991 1.09664 0.96960 0.94854 0.81109 0.78156 0.87468 1.20987 1.06050 0.96633 1.00497 1.22213 0.91450 0.98555 0.87923 1.67150 1.27191 1.09147 1.22157 1.18428 0.88946 0.88418 0.86887 1.44508 1.55784 1.11347 1.22493 1.22578 0.98686 0.80001 0.96316 0.87177 1.23532 1.02205 0.95582 0.95995 1.20542 0.94160 0.93044 0.96195 1.21886 0.92477 0.84783 0.98543 1.86482 1.37504 1.22345 1.90553 1.19376 0.96460 0.95483 0.95569 1.21131 0.97710 0.99932 0.95287 1.21110 0.96429 0.96971 0.99822 1.21210 0.99918 0.95209 0.97716 1.21256 0.97677 0.99956 0.95649 1.21534 0.94175 0.95645 1.00008 1.23648 0.99428 0.97041 0.97289 1.21459 1.05597 1.01821 0.97515 1.21182 0.93832 0.93190 0.94892 0.77441 0.87098 1.17828 1.18105 0.82882 0.75691 0.89878 0.88119 0.92976 0.92893 0.77317 0.86048 0.86226 0.86324 0.86248 0.83579 0.89118 0.90312 0.84998 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.11 12.78 -35.23 -0.45 -0.56 16 2 C -0.05 0.00 2.83 36.00 0.10 0.11 16 3 Si 0.68 -0.58 29.82 -169.99 -5.07 -5.65 16 4 C -0.24 -0.15 5.39 -104.46 -0.56 -0.72 16 5 C 0.16 0.20 9.84 -17.57 -0.17 0.03 16 6 N -0.54 -1.50 10.39 -12.44 -0.13 -1.63 16 7 C 0.41 0.66 7.65 -155.02 -1.19 -0.53 16 8 N -0.71 0.25 5.53 -53.14 -0.29 -0.05 16 9 C 0.13 -0.26 3.63 -67.12 -0.24 -0.51 16 10 H 0.11 -0.31 5.69 -51.93 -0.30 -0.61 16 11 C -0.14 0.34 6.44 -25.92 -0.17 0.17 16 12 C -0.04 0.05 1.06 -154.75 -0.16 -0.12 16 13 C 0.10 -0.22 6.38 37.16 0.24 0.01 16 14 O -0.56 0.90 10.03 -35.23 -0.35 0.54 16 15 C -0.07 -0.07 5.04 -104.62 -0.53 -0.59 16 16 C -0.12 -0.10 9.20 -39.58 -0.36 -0.46 16 17 C -0.13 -0.15 10.05 -39.58 -0.40 -0.55 16 18 C -0.12 -0.18 10.05 -39.58 -0.40 -0.58 16 19 C -0.13 -0.22 10.05 -39.58 -0.40 -0.62 16 20 C -0.10 -0.18 8.84 -39.58 -0.35 -0.53 16 21 C -0.13 0.13 7.00 -25.83 -0.18 -0.05 16 22 C -0.24 -0.14 9.28 -39.22 -0.36 -0.50 16 23 C -0.01 0.00 9.77 -39.32 -0.38 -0.39 16 24 H 0.38 -1.32 8.70 45.56 0.40 -0.93 16 25 H 0.11 0.03 7.96 -51.93 -0.41 -0.38 16 26 H -0.25 -0.59 7.11 56.52 0.40 -0.19 16 27 H -0.26 -0.40 7.11 56.52 0.40 0.00 16 28 H 0.15 -0.10 4.88 -52.49 -0.26 -0.36 16 29 H 0.41 -0.26 8.84 -40.82 -0.36 -0.62 16 30 H 0.08 -0.27 8.10 -51.93 -0.42 -0.69 16 31 H 0.10 -0.26 5.92 -51.93 -0.31 -0.57 16 32 H 0.05 -0.19 7.35 -51.93 -0.38 -0.57 16 33 H 0.05 -0.13 8.14 -51.93 -0.42 -0.55 16 34 H 0.38 -2.01 9.12 45.56 0.42 -1.59 16 35 H 0.12 -0.12 5.76 -52.49 -0.30 -0.42 16 36 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 37 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 38 H 0.12 0.04 8.06 -52.49 -0.42 -0.39 16 39 H 0.15 0.25 5.43 -52.48 -0.29 -0.04 16 40 H 0.09 0.03 8.10 -51.93 -0.42 -0.39 16 41 H 0.08 -0.04 8.10 -51.93 -0.42 -0.46 16 42 H 0.13 -0.17 6.06 -52.49 -0.32 -0.49 16 43 H 0.14 -0.06 8.06 -52.48 -0.42 -0.49 16 LS Contribution 345.67 15.07 5.21 5.21 Total: 0.00 -7.30 345.67 -11.29 -18.59 By element: Atomic # 1 Polarization: -5.95 SS G_CDS: -4.68 Total: -10.64 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -5.52 Total: -5.82 kcal Atomic # 7 Polarization: -1.26 SS G_CDS: -0.42 Total: -1.68 kcal Atomic # 8 Polarization: 0.79 SS G_CDS: -0.80 Total: -0.02 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -5.07 Total: -5.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -7.30 -11.29 -18.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_13915762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.757 kcal (2) G-P(sol) polarization free energy of solvation -7.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds