Wall clock time and date at job start Mon Mar 8 2021 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.38023 * 120.33856 * 119.99650 * 4 2 1 6 6 N 1.31967 * 120.85956 * 179.97438 * 5 4 2 7 7 C 1.32398 * 121.62343 * 359.97438 * 6 5 4 8 8 N 1.38996 * 119.71055 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00547 * 179.97438 * 8 7 6 10 10 H 1.09003 * 112.84312 * 25.33402 * 9 8 7 11 11 C 1.53781 * 113.61501 * 156.52567 * 9 8 7 12 12 C 1.53785 * 87.07733 * 139.98242 * 11 9 8 13 13 C 1.53007 * 113.61202 * 89.20296 * 12 11 9 14 14 O 1.42899 * 109.46624 * 179.97438 * 13 12 11 15 15 C 1.50700 * 113.61404 * 220.01971 * 12 11 9 16 16 C 1.38234 * 119.99826 * 359.72658 * 15 12 11 17 17 C 1.38233 * 119.99942 * 179.76905 * 16 15 12 18 18 C 1.38242 * 119.99902 * 0.50271 * 17 16 15 19 19 C 1.38239 * 119.99796 * 359.75616 * 18 17 16 20 20 C 1.38233 * 119.99978 * 180.02562 * 15 12 11 21 21 C 1.53778 * 113.61629 * 254.13665 * 9 8 7 22 22 C 1.39144 * 120.58441 * 0.02562 * 7 6 5 23 23 C 1.38294 * 119.09869 * 359.74634 * 22 7 6 24 24 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 25 25 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 26 26 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 27 27 H 1.48492 * 109.99800 * 181.32238 * 3 2 1 28 28 H 1.07997 * 119.56815 * 359.97438 * 5 4 2 29 29 H 0.97004 * 119.99917 * 359.97438 * 8 7 6 30 30 H 1.08992 * 113.61503 * 254.53294 * 11 9 8 31 31 H 1.08997 * 113.61063 * 25.43633 * 11 9 8 32 32 H 1.08998 * 109.46931 * 299.99641 * 13 12 11 33 33 H 1.08994 * 109.47200 * 59.99706 * 13 12 11 34 34 H 0.96704 * 113.99202 * 179.97438 * 14 13 12 35 35 H 1.07999 * 120.00446 * 0.02562 * 16 15 12 36 36 H 1.07996 * 120.00387 * 180.23157 * 17 16 15 37 37 H 1.07999 * 120.00365 * 179.72041 * 18 17 16 38 38 H 1.07994 * 119.99750 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.00054 * 0.02562 * 20 15 12 40 40 H 1.08998 * 113.61575 * 334.56787 * 21 9 8 41 41 H 1.09006 * 113.61443 * 105.46716 * 21 9 8 42 42 H 1.08001 * 120.44647 * 180.02562 * 22 7 6 43 43 H 1.08004 * 120.74932 * 180.25237 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7252 -0.0463 -2.1436 6 7 3.1712 -0.6584 -3.2243 7 6 2.8784 -1.9250 -3.4753 8 7 3.3691 -2.5304 -4.6263 9 6 3.0497 -3.9317 -4.9101 10 1 2.1217 -4.2577 -4.4403 11 6 3.1463 -4.2957 -6.4011 12 6 3.7793 -5.6243 -5.9548 13 6 2.7577 -6.7340 -5.6978 14 8 3.4383 -7.9228 -5.2906 15 6 4.9223 -6.0721 -6.8289 16 6 5.3020 -5.3071 -7.9158 17 6 6.3536 -5.7154 -8.7148 18 6 7.0187 -6.8941 -8.4330 19 6 6.6354 -7.6618 -7.3492 20 6 5.5870 -7.2510 -6.5474 21 6 4.2283 -4.8916 -4.6776 22 6 2.0830 -2.6552 -2.5977 23 6 1.6050 -2.0416 -1.4542 24 1 -0.3934 0.4416 -0.7651 25 1 1.7924 -0.5138 0.8900 26 1 1.5613 2.4680 1.2084 27 1 3.5344 1.7705 -0.0322 28 1 2.9848 0.9878 -1.9714 29 1 3.9231 -2.0250 -5.2416 30 1 2.1771 -4.4147 -6.8852 31 1 3.8259 -3.6555 -6.9636 32 1 2.0710 -6.4206 -4.9115 33 1 2.1978 -6.9313 -6.6119 34 1 2.8511 -8.6696 -5.1097 35 1 4.7799 -4.3883 -8.1384 36 1 6.6527 -5.1158 -9.5618 37 1 7.8373 -7.2154 -9.0599 38 1 7.1548 -8.5828 -7.1293 39 1 5.2869 -7.8514 -5.7012 40 1 5.2043 -4.4146 -4.7680 41 1 4.1313 -5.4909 -3.7722 42 1 1.8459 -3.6883 -2.8045 43 1 0.9887 -2.5844 -0.7527 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270512_13915762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:39 Heat of formation + Delta-G solvation = 29.995422 kcal Electronic energy + Delta-G solvation = -25307.290614 eV Core-core repulsion = 21706.294550 eV Total energy + Delta-G solvation = -3600.996064 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88230 -41.13444 -39.18103 -37.94130 -37.26280 -35.42966 -33.41546 -32.06832 -31.74907 -30.95324 -28.21648 -26.94669 -26.28407 -25.03154 -24.39649 -23.26806 -22.90173 -21.82987 -19.73476 -18.96029 -18.43475 -18.38262 -17.77740 -17.24347 -16.67127 -16.45650 -16.17664 -16.03170 -15.83957 -15.70121 -15.32838 -15.23718 -15.08942 -14.48587 -14.31919 -14.13427 -14.02338 -13.64217 -13.49863 -13.38335 -13.28790 -13.05910 -12.43004 -12.35692 -12.18102 -12.07432 -11.79593 -11.62191 -11.34088 -11.03680 -10.77017 -10.70156 -10.41393 -10.37102 -9.77038 -9.54861 -8.67495 -4.99100 0.22784 0.40726 0.46752 0.55832 1.34625 1.63763 1.97245 2.11954 2.80584 2.85674 3.13336 3.42176 3.55290 3.56941 3.62252 3.72433 3.79574 3.86143 3.97720 4.01563 4.10938 4.15361 4.21306 4.31045 4.37949 4.41536 4.53711 4.54610 4.62638 4.66375 4.75367 4.76668 4.81814 4.83571 4.97791 5.01301 5.03991 5.10759 5.21540 5.29704 5.34004 5.55515 5.62898 5.72279 5.78593 6.04192 6.17991 6.54609 6.80732 6.93239 7.14892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.053 4.053 3 Si 0.765 3.235 4 C -0.237 4.237 5 C 0.145 3.855 6 N -0.566 5.566 7 C 0.395 3.605 8 N -0.708 5.708 9 C 0.137 3.863 10 H 0.124 0.876 11 C -0.128 4.128 12 C -0.038 4.038 13 C 0.099 3.901 14 O -0.580 6.580 15 C -0.075 4.075 16 C -0.132 4.132 17 C -0.137 4.137 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.241 4.241 23 C -0.012 4.012 24 H 0.394 0.606 25 H 0.107 0.893 26 H -0.296 1.296 27 H -0.288 1.288 28 H 0.166 0.834 29 H 0.406 0.594 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.393 0.607 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.150 0.850 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.732 -1.427 -2.835 4.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.164 4.164 3 Si 0.672 3.328 4 C -0.243 4.243 5 C -0.012 4.012 6 N -0.283 5.283 7 C 0.159 3.841 8 N -0.338 5.338 9 C 0.031 3.969 10 H 0.142 0.858 11 C -0.165 4.165 12 C -0.039 4.039 13 C 0.022 3.978 14 O -0.390 6.390 15 C -0.075 4.075 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.129 4.129 21 C -0.174 4.174 22 C -0.266 4.266 23 C -0.038 4.038 24 H 0.244 0.756 25 H 0.124 0.876 26 H -0.224 1.224 27 H -0.216 1.216 28 H 0.183 0.817 29 H 0.243 0.757 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.204 -0.512 -2.574 3.427 hybrid contribution -0.211 -1.269 0.574 1.409 sum -2.415 -1.781 -1.999 3.606 Atomic orbital electron populations 1.86451 1.17317 1.82103 1.50483 1.24816 0.85101 1.09994 0.96498 0.93859 0.77860 0.75977 0.85099 1.21039 1.05901 0.96838 1.00484 1.22445 0.91637 0.99230 0.87886 1.67148 1.28158 1.10018 1.23003 1.18684 0.89367 0.88400 0.87609 1.44597 1.55469 1.11801 1.21965 1.22633 0.98553 0.78907 0.96765 0.85827 1.23502 1.02770 0.94591 0.95685 1.20597 0.93870 0.93910 0.95537 1.21953 0.92208 0.84323 0.99352 1.86432 1.38708 1.23183 1.90641 1.19654 0.96894 0.95094 0.95826 1.21406 0.97762 1.00556 0.95195 1.21395 0.96567 0.97096 1.00395 1.21436 1.00536 0.95561 0.97999 1.21469 0.98027 1.00532 0.96003 1.21663 0.94649 0.96322 1.00261 1.23581 0.99100 0.97351 0.97344 1.21662 1.05107 1.02597 0.97189 1.21393 0.93910 0.93306 0.95169 0.75594 0.87595 1.22423 1.21557 0.81741 0.75719 0.88496 0.88068 0.91192 0.92545 0.75616 0.84377 0.84870 0.85241 0.85525 0.83799 0.90805 0.90771 0.83213 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.12 12.78 -148.98 -1.90 -1.78 16 2 C -0.05 0.02 2.83 71.23 0.20 0.22 16 3 Si 0.77 -1.09 29.82 68.60 2.05 0.96 16 4 C -0.24 -0.26 5.39 -19.76 -0.11 -0.37 16 5 C 0.14 0.39 9.84 84.62 0.83 1.22 16 6 N -0.57 -3.27 10.39 -193.27 -2.01 -5.28 16 7 C 0.40 1.19 7.65 133.07 1.02 2.21 16 8 N -0.71 0.69 5.53 -322.04 -1.78 -1.09 16 9 C 0.14 -0.67 3.63 45.52 0.17 -0.50 16 10 H 0.12 -0.93 5.69 -2.39 -0.01 -0.94 16 11 C -0.13 0.77 6.44 31.12 0.20 0.97 16 12 C -0.04 0.11 1.06 -52.34 -0.06 0.06 16 13 C 0.10 -0.53 6.38 71.98 0.46 -0.07 16 14 O -0.58 1.93 10.03 -148.98 -1.49 0.43 16 15 C -0.07 -0.17 5.04 -19.87 -0.10 -0.27 16 16 C -0.13 -0.22 9.20 22.27 0.20 -0.02 16 17 C -0.14 -0.37 10.05 22.27 0.22 -0.14 16 18 C -0.14 -0.51 10.05 22.27 0.22 -0.29 16 19 C -0.14 -0.65 10.05 22.27 0.22 -0.42 16 20 C -0.11 -0.51 8.84 22.27 0.20 -0.31 16 21 C -0.13 0.25 7.00 31.18 0.22 0.47 16 22 C -0.24 -0.09 9.28 22.50 0.21 0.11 16 23 C -0.01 -0.01 9.77 22.44 0.22 0.21 16 24 H 0.39 -3.11 8.70 -74.06 -0.64 -3.75 16 25 H 0.11 0.06 7.96 -2.39 -0.02 0.05 16 26 H -0.30 -1.70 7.11 99.48 0.71 -1.00 16 27 H -0.29 -1.11 7.11 99.48 0.71 -0.41 16 28 H 0.17 -0.20 4.88 -2.91 -0.01 -0.21 16 29 H 0.41 -0.49 8.84 -92.71 -0.82 -1.31 16 30 H 0.10 -0.81 8.10 -2.39 -0.02 -0.82 16 31 H 0.10 -0.61 5.92 -2.39 -0.01 -0.62 16 32 H 0.07 -0.63 7.35 -2.39 -0.02 -0.65 16 33 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.39 -4.29 9.12 -74.05 -0.68 -4.96 16 35 H 0.14 -0.35 5.76 -2.91 -0.02 -0.37 16 36 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 38 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.14 0.64 5.43 -2.91 -0.02 0.63 16 40 H 0.07 0.12 8.10 -2.39 -0.02 0.10 16 41 H 0.07 -0.07 8.10 -2.38 -0.02 -0.09 16 42 H 0.15 -0.61 6.06 -2.91 -0.02 -0.63 16 43 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 Total: 0.00 -17.39 345.67 -1.83 -19.23 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -1.02 Total: -15.55 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.33 Total: 3.09 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: -3.79 Total: -6.37 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: -3.40 Total: -1.35 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.05 Total: 0.96 kcal Total: -17.39 -1.83 -19.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_13915762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.221 kcal (2) G-P(sol) polarization free energy of solvation -17.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds