Wall clock time and date at job start Mon Mar 8 2021 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47181 * 2 1 4 4 C 1.50701 * 109.46638 * 240.00546 * 2 1 3 5 5 C 1.33337 * 125.95171 * 299.99396 * 4 2 1 6 6 N 1.32113 * 114.57904 * 180.02562 * 5 4 2 7 7 C 1.29684 * 116.87075 * 0.02562 * 6 5 4 8 8 N 1.38606 * 124.95566 * 179.97438 * 7 6 5 9 9 C 1.46507 * 119.99581 * 0.02562 * 8 7 6 10 10 H 1.08994 * 112.84881 * 23.80915 * 9 8 7 11 11 C 1.53785 * 113.61347 * 155.00100 * 9 8 7 12 12 C 1.53772 * 87.08230 * 140.06797 * 11 9 8 13 13 C 1.52996 * 113.61529 * 89.19828 * 12 11 9 14 14 O 1.42901 * 109.47131 * 181.53182 * 13 12 11 15 15 C 1.50702 * 113.61766 * 220.02245 * 12 11 9 16 16 C 1.38234 * 120.00257 * 178.47263 * 15 12 11 17 17 C 1.38238 * 119.99675 * 180.25732 * 16 15 12 18 18 C 1.38228 * 120.00110 * 359.52133 * 17 16 15 19 19 C 1.38234 * 120.00090 * 0.43562 * 18 17 16 20 20 C 1.38235 * 119.99522 * 358.44276 * 15 12 11 21 21 C 1.53791 * 87.17430 * 334.61025 * 12 11 9 22 22 S 1.70971 * 110.09977 * 0.23848 * 7 6 5 23 23 H 0.96701 * 114.00428 * 59.99424 * 1 2 3 24 24 H 1.09001 * 109.47486 * 120.00551 * 2 1 3 25 25 H 1.48502 * 109.99801 * 60.00485 * 3 2 1 26 26 H 1.48501 * 109.99795 * 181.32074 * 3 2 1 27 27 H 1.08000 * 122.70672 * 359.97438 * 5 4 2 28 28 H 0.97002 * 120.00907 * 180.02562 * 8 7 6 29 29 H 1.09002 * 113.61470 * 25.51782 * 11 9 8 30 30 H 1.09003 * 113.68960 * 254.62830 * 11 9 8 31 31 H 1.09004 * 109.47757 * 301.53128 * 13 12 11 32 32 H 1.09000 * 109.47460 * 61.53200 * 13 12 11 33 33 H 0.96702 * 114.00354 * 180.02562 * 14 13 12 34 34 H 1.08002 * 119.99744 * 359.97115 * 16 15 12 35 35 H 1.08004 * 119.99577 * 179.72816 * 17 16 15 36 36 H 1.07998 * 119.99896 * 180.21041 * 18 17 16 37 37 H 1.08001 * 120.00324 * 179.78918 * 19 18 17 38 38 H 1.07996 * 120.00471 * 0.02562 * 20 15 12 39 39 H 1.09001 * 113.61644 * 139.93809 * 21 12 11 40 40 H 1.08996 * 113.61149 * 270.84662 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7103 -1.2306 5 6 1.6833 -1.9788 -1.5582 6 7 2.2382 -2.3723 -2.6907 7 6 2.9435 -1.4945 -3.3340 8 7 3.5976 -1.7261 -4.5339 9 6 3.5195 -3.0444 -5.1681 10 1 2.6370 -3.6080 -4.8655 11 6 3.7359 -3.0095 -6.6903 12 6 4.5526 -4.3018 -6.5247 13 6 3.7108 -5.5756 -6.6224 14 8 4.5477 -6.7163 -6.4214 15 6 5.7884 -4.3496 -7.3859 16 6 6.6367 -5.4390 -7.3179 17 6 7.7730 -5.4802 -8.1040 18 6 8.0558 -4.4368 -8.9653 19 6 7.2071 -3.3478 -9.0341 20 6 6.0733 -3.3043 -8.2444 21 6 4.8262 -3.8535 -5.0792 22 16 2.9550 -0.0119 -2.4826 23 1 -0.3934 0.4418 -0.7650 24 1 1.7924 -0.5139 0.8899 25 1 1.5616 2.4678 1.2086 26 1 3.5346 1.7702 -0.0322 27 1 1.0786 -2.6320 -0.9467 28 1 4.1071 -1.0154 -4.9537 29 1 4.3282 -2.1588 -7.0277 30 1 2.8200 -3.1425 -7.2661 31 1 2.9330 -5.5566 -5.8589 32 1 3.2503 -5.6321 -7.6087 33 1 4.0797 -7.5611 -6.4701 34 1 6.4140 -6.2556 -6.6471 35 1 8.4381 -6.3294 -8.0476 36 1 8.9418 -4.4706 -9.5820 37 1 7.4299 -2.5310 -9.7046 38 1 5.4106 -2.4532 -8.2977 39 1 4.7884 -4.6674 -4.3551 40 1 5.7170 -3.2341 -4.9754 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13270512_15704118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:43 Heat of formation + Delta-G solvation = 33.421380 kcal Electronic energy + Delta-G solvation = -23801.422947 eV Core-core repulsion = 20289.727691 eV Total energy + Delta-G solvation = -3511.695257 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.79982 -40.56142 -39.13356 -37.91995 -37.37235 -35.41256 -31.95123 -31.70448 -31.02967 -28.42566 -27.03787 -26.51090 -25.16712 -24.18826 -23.19028 -22.55984 -20.69695 -20.19066 -19.26431 -18.68753 -18.13479 -17.63604 -17.00584 -16.77785 -16.40806 -16.13115 -15.88216 -15.82811 -15.56766 -15.41477 -15.31306 -14.86552 -14.50939 -14.16970 -13.99676 -13.63615 -13.51199 -13.37500 -13.22675 -12.86852 -12.42532 -12.34208 -12.28836 -12.01463 -11.87657 -11.64471 -11.42428 -11.07437 -10.84206 -10.75260 -10.23332 -10.13607 -9.70089 -9.50054 -8.72592 -5.12666 -0.01487 0.04433 0.52315 0.63181 0.70620 1.27199 1.59426 1.91653 2.04669 2.13523 2.81067 3.04833 3.34966 3.44410 3.46094 3.64745 3.68043 3.84274 3.92287 3.95980 4.14219 4.21609 4.31388 4.36869 4.42165 4.49344 4.50560 4.59563 4.67529 4.72563 4.76186 4.85787 4.93881 4.97327 5.01423 5.17758 5.26418 5.33529 5.67837 5.78820 5.83219 5.85540 6.04814 6.22155 6.53230 6.61657 7.01842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.655 3.345 4 C -0.308 4.308 5 C 0.120 3.880 6 N -0.551 5.551 7 C 0.327 3.673 8 N -0.681 5.681 9 C 0.140 3.860 10 H 0.119 0.881 11 C -0.138 4.138 12 C -0.038 4.038 13 C 0.101 3.899 14 O -0.563 6.563 15 C -0.068 4.068 16 C -0.095 4.095 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.133 4.133 22 S 0.086 5.914 23 H 0.380 0.620 24 H 0.121 0.879 25 H -0.236 1.236 26 H -0.241 1.241 27 H 0.176 0.824 28 H 0.414 0.586 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.379 0.621 34 H 0.145 0.855 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 1.404 -3.487 3.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.124 4.124 3 Si 0.555 3.445 4 C -0.430 4.430 5 C -0.031 4.031 6 N -0.276 5.276 7 C -0.043 4.043 8 N -0.319 5.319 9 C 0.033 3.967 10 H 0.137 0.863 11 C -0.176 4.176 12 C -0.038 4.038 13 C 0.023 3.977 14 O -0.370 6.370 15 C -0.068 4.068 16 C -0.113 4.113 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.172 4.172 22 S 0.335 5.665 23 H 0.227 0.773 24 H 0.138 0.862 25 H -0.159 1.159 26 H -0.165 1.165 27 H 0.193 0.807 28 H 0.252 0.748 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.162 0.838 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.474 2.455 -2.887 3.819 hybrid contribution -0.541 -1.322 0.232 1.447 sum -0.067 1.133 -2.655 2.888 Atomic orbital electron populations 1.86510 1.16914 1.81677 1.49135 1.24107 0.84806 1.08875 0.94633 0.94987 0.82015 0.78112 0.89359 1.25572 1.13206 0.99361 1.04900 1.21319 0.97053 0.92979 0.91764 1.66463 1.17176 1.33536 1.10459 1.23771 0.94806 0.93435 0.92303 1.44076 1.54109 1.14383 1.19350 1.22649 0.99381 0.83099 0.91613 0.86283 1.23571 1.00744 0.97438 0.95874 1.20489 0.93701 0.93737 0.95905 1.21884 0.91328 0.84604 0.99879 1.86460 1.38379 1.16551 1.95604 1.19399 0.95485 0.94862 0.97044 1.21483 0.93054 0.98005 0.98735 1.21255 0.97629 0.98728 0.96863 1.21199 0.99590 0.94319 0.98991 1.21105 0.95094 0.98480 0.99662 1.21119 0.97653 0.98570 0.96787 1.23600 0.98305 1.00059 0.95251 1.83992 1.51296 1.14057 1.17142 0.77274 0.86171 1.15918 1.16526 0.80736 0.74792 0.88308 0.89858 0.92744 0.92993 0.77271 0.83772 0.86237 0.86328 0.86240 0.86071 0.90187 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.13 12.87 -35.23 -0.45 -0.58 16 2 C -0.01 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.37 31.05 -169.99 -5.28 -5.65 16 4 C -0.31 -0.25 5.74 -36.02 -0.21 -0.45 16 5 C 0.12 0.23 11.22 -19.14 -0.21 0.01 16 6 N -0.55 -1.55 9.83 -15.21 -0.15 -1.70 16 7 C 0.33 0.38 8.09 -87.69 -0.71 -0.33 16 8 N -0.68 0.63 5.52 -54.90 -0.30 0.33 16 9 C 0.14 -0.15 4.01 -67.02 -0.27 -0.42 16 10 H 0.12 0.01 7.16 -51.93 -0.37 -0.36 16 11 C -0.14 0.31 6.41 -25.92 -0.17 0.15 16 12 C -0.04 0.03 1.04 -154.85 -0.16 -0.13 16 13 C 0.10 -0.13 6.36 37.16 0.24 0.11 16 14 O -0.56 0.43 10.18 -35.23 -0.36 0.07 16 15 C -0.07 -0.07 5.02 -104.62 -0.53 -0.60 16 16 C -0.10 -0.19 8.85 -39.58 -0.35 -0.54 16 17 C -0.13 -0.23 10.05 -39.59 -0.40 -0.62 16 18 C -0.12 -0.17 10.05 -39.59 -0.40 -0.57 16 19 C -0.13 -0.13 10.05 -39.58 -0.40 -0.53 16 20 C -0.12 -0.08 9.19 -39.58 -0.36 -0.44 16 21 C -0.13 0.03 7.02 -25.82 -0.18 -0.15 16 22 S 0.09 0.00 20.57 -107.50 -2.21 -2.21 16 23 H 0.38 -1.28 8.70 45.56 0.40 -0.88 16 24 H 0.12 0.02 7.96 -51.93 -0.41 -0.39 16 25 H -0.24 -0.48 7.11 56.52 0.40 -0.08 16 26 H -0.24 -0.41 7.11 56.52 0.40 -0.01 16 27 H 0.18 0.15 8.06 -52.49 -0.42 -0.28 16 28 H 0.41 -1.23 8.85 -40.82 -0.36 -1.59 16 29 H 0.10 -0.31 5.98 -51.93 -0.31 -0.62 16 30 H 0.08 -0.23 8.10 -51.93 -0.42 -0.65 16 31 H 0.05 -0.11 7.34 -51.93 -0.38 -0.49 16 32 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 33 H 0.38 -1.69 9.12 45.56 0.42 -1.27 16 34 H 0.14 0.30 5.57 -52.49 -0.29 0.01 16 35 H 0.12 0.04 8.06 -52.48 -0.42 -0.38 16 36 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 37 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 38 H 0.12 -0.16 5.80 -52.49 -0.30 -0.47 16 39 H 0.08 0.09 8.10 -51.93 -0.42 -0.33 16 40 H 0.09 0.03 8.09 -51.93 -0.42 -0.39 16 LS Contribution 341.46 15.07 5.15 5.15 Total: 0.00 -6.84 341.46 -11.80 -18.64 By element: Atomic # 1 Polarization: -5.44 SS G_CDS: -4.20 Total: -9.63 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -4.00 Total: -4.41 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -0.45 Total: -1.37 kcal Atomic # 8 Polarization: 0.30 SS G_CDS: -0.81 Total: -0.51 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.28 Total: -5.65 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.21 Total: -2.21 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -6.84 -11.80 -18.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_15704118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.066 kcal (2) G-P(sol) polarization free energy of solvation -6.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds