Wall clock time and date at job start Mon Mar 8 2021 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33327 * 125.94874 * 2 1 4 4 C 1.50704 * 122.70898 * 359.95964 * 3 2 1 5 5 O 1.42895 * 109.47167 * 329.73839 * 4 3 2 6 6 Si 1.86307 * 109.47090 * 209.73407 * 4 3 2 7 7 N 1.32119 * 114.58048 * 179.69395 * 3 2 1 8 8 C 1.29688 * 116.86642 * 0.26986 * 7 3 2 9 9 N 1.38603 * 124.95182 * 179.97438 * 8 7 3 10 10 C 1.46507 * 119.99930 * 179.97438 * 9 8 7 11 11 H 1.08994 * 112.85220 * 334.66797 * 10 9 8 12 12 C 1.53776 * 113.61431 * 105.86620 * 10 9 8 13 13 C 1.53949 * 87.01975 * 139.94962 * 12 10 9 14 14 C 1.53001 * 113.61588 * 89.20029 * 13 12 10 15 15 O 1.42898 * 109.47105 * 82.46451 * 14 13 12 16 16 C 1.50706 * 113.66683 * 220.06443 * 13 12 10 17 17 C 1.38234 * 120.00075 * 331.59886 * 16 13 12 18 18 C 1.38234 * 119.99693 * 179.76566 * 17 16 13 19 19 C 1.38226 * 120.00345 * 0.47839 * 18 17 16 20 20 C 1.38236 * 120.00240 * 359.79557 * 19 18 17 21 21 C 1.38231 * 119.99952 * 151.86410 * 16 13 12 22 22 C 1.53778 * 87.11312 * 334.63514 * 13 12 10 23 23 S 1.70975 * 110.10027 * 359.97438 * 8 7 3 24 24 H 1.09002 * 109.46370 * 90.00364 * 1 2 3 25 25 H 1.08999 * 109.46647 * 210.00217 * 1 2 3 26 26 H 1.08998 * 109.46929 * 330.00283 * 1 2 3 27 27 H 1.09000 * 109.46536 * 89.73747 * 4 3 2 28 28 H 0.96697 * 113.99937 * 299.99215 * 5 4 3 29 29 H 1.48491 * 109.99549 * 180.02562 * 6 4 3 30 30 H 1.48493 * 109.99944 * 301.32445 * 6 4 3 31 31 H 0.97005 * 119.99987 * 0.02562 * 9 8 7 32 32 H 1.08997 * 113.61517 * 254.53075 * 12 10 9 33 33 H 1.09002 * 113.61372 * 25.43160 * 12 10 9 34 34 H 1.08995 * 109.47143 * 202.46845 * 14 13 12 35 35 H 1.08994 * 109.46727 * 322.46929 * 14 13 12 36 36 H 0.96699 * 113.99998 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.99516 * 359.97438 * 17 16 13 38 38 H 1.08008 * 119.99534 * 180.24664 * 18 17 16 39 39 H 1.07998 * 120.00508 * 179.76970 * 19 18 17 40 40 H 1.07994 * 120.00641 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.00314 * 0.02562 * 21 16 13 42 42 H 1.09002 * 113.61694 * 270.81105 * 22 13 12 43 43 H 1.09003 * 113.68923 * 139.92137 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7413 2.4830 -0.0009 5 8 0.4845 2.5029 -0.6805 6 14 2.9364 3.6162 -0.8719 7 7 3.5850 0.8189 0.0064 8 6 3.9316 -0.4308 0.0064 9 7 5.2385 -0.8924 0.0121 10 6 5.5066 -2.3327 0.0120 11 1 4.6896 -2.9154 0.4373 12 6 6.0044 -2.8665 -1.3416 13 6 6.9813 -3.7489 -0.5433 14 6 6.4024 -5.1124 -0.1601 15 8 6.5349 -6.0128 -1.2618 16 6 8.3514 -3.8482 -1.1631 17 6 8.5020 -3.7205 -2.5313 18 6 9.7594 -3.8067 -3.0992 19 6 10.8648 -4.0306 -2.3001 20 6 10.7136 -4.1641 -0.9325 21 6 9.4568 -4.0726 -0.3641 22 6 6.8874 -2.7022 0.5793 23 16 2.5414 -1.4260 -0.0017 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6041 2.8201 1.0266 28 1 0.5312 2.2144 -1.6023 29 1 2.4073 5.0036 -0.8789 30 1 4.2569 3.5800 -0.1935 31 1 5.9756 -0.2618 0.0168 32 1 5.2523 -3.4327 -1.8909 33 1 6.4982 -2.1118 -1.9537 34 1 6.9432 -5.5080 0.6996 35 1 5.3482 -5.0012 0.0935 36 1 6.1875 -6.8987 -1.0896 37 1 7.6377 -3.5499 -3.1560 38 1 9.8775 -3.7029 -4.1677 39 1 11.8467 -4.1017 -2.7442 40 1 11.5772 -4.3394 -0.3082 41 1 9.3386 -4.1771 0.7044 42 1 7.6231 -1.9025 0.4934 43 1 6.8472 -3.1347 1.5791 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13270512_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:47 Heat of formation + Delta-G solvation = 24.721321 kcal Electronic energy + Delta-G solvation = -25922.042297 eV Core-core repulsion = 22254.432159 eV Total energy + Delta-G solvation = -3667.610139 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83895 -40.91814 -39.30445 -37.88852 -37.31946 -35.47170 -32.75101 -31.81381 -31.59872 -29.31894 -28.12665 -27.14948 -25.64336 -24.88334 -24.18212 -23.18150 -22.59523 -20.72856 -19.69104 -19.18923 -18.43270 -18.03553 -17.71014 -17.41520 -16.80099 -16.49573 -16.23308 -15.95591 -15.68049 -15.54689 -15.40772 -15.24574 -14.56893 -14.31130 -14.13037 -14.02393 -13.80077 -13.73553 -13.59452 -13.44965 -13.36530 -13.18422 -12.72869 -12.59054 -12.32020 -12.26129 -12.11346 -11.81911 -11.61115 -11.51101 -11.02729 -10.92335 -10.52696 -10.27321 -9.96617 -9.76100 -9.57277 -8.59381 -4.82262 0.05762 0.20686 0.49246 0.56108 0.81970 1.41800 1.86915 1.93580 1.97662 2.27753 2.82176 2.89762 3.09533 3.38239 3.45150 3.47730 3.57036 3.71284 3.83253 4.07213 4.13767 4.16515 4.21362 4.26512 4.28934 4.37748 4.37906 4.51462 4.53145 4.56771 4.61449 4.71623 4.79465 4.81556 4.83509 4.90857 4.96583 5.13281 5.17043 5.17639 5.34258 5.61793 5.62118 5.67972 5.72643 6.13874 6.27311 6.53030 6.58236 6.99659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.238 4.238 3 C 0.067 3.933 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.715 3.285 7 N -0.545 5.545 8 C 0.321 3.679 9 N -0.682 5.682 10 C 0.127 3.873 11 H 0.108 0.892 12 C -0.139 4.139 13 C -0.039 4.039 14 C 0.101 3.899 15 O -0.562 6.562 16 C -0.053 4.053 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.125 4.125 23 S 0.095 5.905 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.379 0.621 29 H -0.262 1.262 30 H -0.252 1.252 31 H 0.413 0.587 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.382 0.618 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.330 -4.081 -0.788 4.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.360 4.360 3 C -0.063 4.063 4 C -0.147 4.147 5 O -0.340 6.340 6 Si 0.616 3.384 7 N -0.271 5.271 8 C -0.051 4.051 9 N -0.322 5.322 10 C 0.021 3.979 11 H 0.126 0.874 12 C -0.178 4.178 13 C -0.040 4.040 14 C 0.023 3.977 15 O -0.368 6.368 16 C -0.053 4.053 17 C -0.120 4.120 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.134 4.134 22 C -0.163 4.163 23 S 0.344 5.656 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.137 0.863 28 H 0.227 0.773 29 H -0.188 1.188 30 H -0.177 1.177 31 H 0.252 0.748 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.229 0.771 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.118 0.882 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.181 -3.499 -0.402 3.715 hybrid contribution -0.225 0.076 0.902 0.933 sum 0.956 -3.424 0.500 3.590 Atomic orbital electron populations 1.20210 0.86395 1.03104 1.02744 1.25129 1.01289 0.92630 1.16986 1.20135 0.86765 0.97141 1.02307 1.24509 0.92553 0.95557 1.02045 1.86501 1.28957 1.89694 1.28897 0.94074 0.77606 0.76448 0.90252 1.65978 1.17257 1.16659 1.27248 1.23321 0.91872 0.91446 0.98415 1.43967 1.01803 1.06532 1.79888 1.22679 0.97771 0.79542 0.97908 0.87429 1.23698 0.98563 0.98777 0.96762 1.20544 0.93138 0.93340 0.96992 1.21884 0.98595 0.88317 0.88864 1.86521 1.85644 1.25317 1.39289 1.19257 0.92939 0.99576 0.93522 1.20967 0.97229 0.99519 0.94236 1.21169 0.92714 0.99954 0.99913 1.21174 0.98849 1.00136 0.93969 1.21125 0.97226 1.00235 0.95193 1.20921 0.92326 1.00650 0.99527 1.23425 0.96068 0.98304 0.98540 1.83924 0.96684 1.10778 1.74260 0.91020 0.92306 0.89071 0.86297 0.77349 1.18766 1.17651 0.74801 0.89914 0.88557 0.92972 0.93024 0.77129 0.86155 0.86103 0.86180 0.86145 0.86444 0.88173 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.00 8.95 36.01 0.32 0.33 16 2 C -0.24 -0.38 6.50 -36.02 -0.23 -0.61 16 3 C 0.07 0.16 5.92 -84.18 -0.50 -0.34 16 4 C -0.03 -0.04 2.82 36.01 0.10 0.06 16 5 O -0.54 -0.10 9.91 -35.23 -0.35 -0.45 16 6 Si 0.72 0.92 32.09 -169.99 -5.45 -4.54 16 7 N -0.54 -1.82 8.95 -11.36 -0.10 -1.92 16 8 C 0.32 0.57 8.24 -87.69 -0.72 -0.16 16 9 N -0.68 0.27 5.52 -54.99 -0.30 -0.03 16 10 C 0.13 -0.26 3.85 -67.12 -0.26 -0.52 16 11 H 0.11 -0.25 6.63 -51.93 -0.34 -0.60 16 12 C -0.14 0.22 5.99 -25.83 -0.15 0.07 16 13 C -0.04 0.06 0.89 -154.76 -0.14 -0.08 16 14 C 0.10 -0.21 6.39 37.16 0.24 0.03 16 15 O -0.56 0.33 13.13 -35.23 -0.46 -0.13 16 16 C -0.05 -0.02 4.33 -104.62 -0.45 -0.47 16 17 C -0.10 -0.12 9.03 -39.58 -0.36 -0.47 16 18 C -0.12 -0.13 10.05 -39.59 -0.40 -0.53 16 19 C -0.12 -0.12 10.05 -39.59 -0.40 -0.52 16 20 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 21 C -0.12 -0.05 9.39 -39.58 -0.37 -0.43 16 22 C -0.13 0.34 6.63 -25.92 -0.17 0.16 16 23 S 0.09 0.07 21.71 -107.50 -2.33 -2.26 16 24 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 26 H 0.09 0.06 6.63 -51.93 -0.34 -0.29 16 27 H 0.12 0.21 7.96 -51.93 -0.41 -0.21 16 28 H 0.38 -1.20 8.68 45.56 0.40 -0.80 16 29 H -0.26 -0.96 7.11 56.52 0.40 -0.55 16 30 H -0.25 -1.20 7.11 56.52 0.40 -0.80 16 31 H 0.41 -0.34 8.84 -40.82 -0.36 -0.70 16 32 H 0.08 -0.10 8.10 -51.93 -0.42 -0.52 16 33 H 0.10 -0.10 7.45 -51.93 -0.39 -0.49 16 34 H 0.05 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.05 -0.17 7.35 -51.93 -0.38 -0.56 16 36 H 0.38 -1.70 9.12 45.56 0.42 -1.28 16 37 H 0.12 0.05 7.03 -52.49 -0.37 -0.31 16 38 H 0.12 -0.05 8.06 -52.48 -0.42 -0.47 16 39 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 40 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 41 H 0.12 -0.13 8.03 -52.48 -0.42 -0.55 16 42 H 0.10 -0.25 8.06 -51.93 -0.42 -0.67 16 43 H 0.08 -0.30 8.10 -51.93 -0.42 -0.72 16 LS Contribution 365.16 15.07 5.50 5.50 Total: 0.00 -7.25 365.16 -12.60 -19.85 By element: Atomic # 1 Polarization: -6.84 SS G_CDS: -5.20 Total: -12.05 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.89 Total: -3.97 kcal Atomic # 7 Polarization: -1.55 SS G_CDS: -0.41 Total: -1.95 kcal Atomic # 8 Polarization: 0.23 SS G_CDS: -0.81 Total: -0.58 kcal Atomic # 14 Polarization: 0.92 SS G_CDS: -5.45 Total: -4.54 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.33 Total: -2.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -7.25 -12.60 -19.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.572 kcal (2) G-P(sol) polarization free energy of solvation -7.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds