Wall clock time and date at job start Mon Mar 8 2021 05:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33327 * 125.94874 * 2 1 4 4 C 1.50704 * 122.70898 * 359.95964 * 3 2 1 5 5 O 1.42895 * 109.47167 * 329.73839 * 4 3 2 6 6 Si 1.86307 * 109.47090 * 209.73407 * 4 3 2 7 7 N 1.32119 * 114.58048 * 179.69395 * 3 2 1 8 8 C 1.29688 * 116.86642 * 0.26986 * 7 3 2 9 9 N 1.38603 * 124.95182 * 179.97438 * 8 7 3 10 10 C 1.46507 * 119.99930 * 179.97438 * 9 8 7 11 11 H 1.08994 * 112.85220 * 334.66797 * 10 9 8 12 12 C 1.53776 * 113.61431 * 105.86620 * 10 9 8 13 13 C 1.53949 * 87.01975 * 139.94962 * 12 10 9 14 14 C 1.53001 * 113.61588 * 89.20029 * 13 12 10 15 15 O 1.42898 * 109.47105 * 82.46451 * 14 13 12 16 16 C 1.50706 * 113.66683 * 220.06443 * 13 12 10 17 17 C 1.38234 * 120.00075 * 331.59886 * 16 13 12 18 18 C 1.38234 * 119.99693 * 179.76566 * 17 16 13 19 19 C 1.38226 * 120.00345 * 0.47839 * 18 17 16 20 20 C 1.38236 * 120.00240 * 359.79557 * 19 18 17 21 21 C 1.38231 * 119.99952 * 151.86410 * 16 13 12 22 22 C 1.53778 * 87.11312 * 334.63514 * 13 12 10 23 23 S 1.70975 * 110.10027 * 359.97438 * 8 7 3 24 24 H 1.09002 * 109.46370 * 90.00364 * 1 2 3 25 25 H 1.08999 * 109.46647 * 210.00217 * 1 2 3 26 26 H 1.08998 * 109.46929 * 330.00283 * 1 2 3 27 27 H 1.09000 * 109.46536 * 89.73747 * 4 3 2 28 28 H 0.96697 * 113.99937 * 299.99215 * 5 4 3 29 29 H 1.48491 * 109.99549 * 180.02562 * 6 4 3 30 30 H 1.48493 * 109.99944 * 301.32445 * 6 4 3 31 31 H 0.97005 * 119.99987 * 0.02562 * 9 8 7 32 32 H 1.08997 * 113.61517 * 254.53075 * 12 10 9 33 33 H 1.09002 * 113.61372 * 25.43160 * 12 10 9 34 34 H 1.08995 * 109.47143 * 202.46845 * 14 13 12 35 35 H 1.08994 * 109.46727 * 322.46929 * 14 13 12 36 36 H 0.96699 * 113.99998 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.99516 * 359.97438 * 17 16 13 38 38 H 1.08008 * 119.99534 * 180.24664 * 18 17 16 39 39 H 1.07998 * 120.00508 * 179.76970 * 19 18 17 40 40 H 1.07994 * 120.00641 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.00314 * 0.02562 * 21 16 13 42 42 H 1.09002 * 113.61694 * 270.81105 * 22 13 12 43 43 H 1.09003 * 113.68923 * 139.92137 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7413 2.4830 -0.0009 5 8 0.4845 2.5029 -0.6805 6 14 2.9364 3.6162 -0.8719 7 7 3.5850 0.8189 0.0064 8 6 3.9316 -0.4308 0.0064 9 7 5.2385 -0.8924 0.0121 10 6 5.5066 -2.3327 0.0120 11 1 4.6896 -2.9154 0.4373 12 6 6.0044 -2.8665 -1.3416 13 6 6.9813 -3.7489 -0.5433 14 6 6.4024 -5.1124 -0.1601 15 8 6.5349 -6.0128 -1.2618 16 6 8.3514 -3.8482 -1.1631 17 6 8.5020 -3.7205 -2.5313 18 6 9.7594 -3.8067 -3.0992 19 6 10.8648 -4.0306 -2.3001 20 6 10.7136 -4.1641 -0.9325 21 6 9.4568 -4.0726 -0.3641 22 6 6.8874 -2.7022 0.5793 23 16 2.5414 -1.4260 -0.0017 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6041 2.8201 1.0266 28 1 0.5312 2.2144 -1.6023 29 1 2.4073 5.0036 -0.8789 30 1 4.2569 3.5800 -0.1935 31 1 5.9756 -0.2618 0.0168 32 1 5.2523 -3.4327 -1.8909 33 1 6.4982 -2.1118 -1.9537 34 1 6.9432 -5.5080 0.6996 35 1 5.3482 -5.0012 0.0935 36 1 6.1875 -6.8987 -1.0896 37 1 7.6377 -3.5499 -3.1560 38 1 9.8775 -3.7029 -4.1677 39 1 11.8467 -4.1017 -2.7442 40 1 11.5772 -4.3394 -0.3082 41 1 9.3386 -4.1771 0.7044 42 1 7.6231 -1.9025 0.4934 43 1 6.8472 -3.1347 1.5791 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270512_15704122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:46 Heat of formation + Delta-G solvation = 27.485464 kcal Electronic energy + Delta-G solvation = -25921.922435 eV Core-core repulsion = 22254.432159 eV Total energy + Delta-G solvation = -3667.490277 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74040 -40.99184 -39.27756 -37.88267 -37.22190 -35.44283 -32.76341 -31.81857 -31.58748 -29.35038 -28.01749 -26.99901 -25.67300 -24.82594 -24.21631 -23.18400 -22.55142 -20.76050 -19.61562 -19.17551 -18.33030 -18.00578 -17.72135 -17.40178 -16.77618 -16.54471 -16.11516 -15.90901 -15.71600 -15.57755 -15.32810 -15.24825 -14.51704 -14.31506 -14.28723 -13.98333 -13.79909 -13.74740 -13.48891 -13.37713 -13.33121 -13.12031 -12.74864 -12.53238 -12.38941 -12.18622 -12.12785 -12.00310 -11.51594 -11.42246 -10.96328 -10.78538 -10.61923 -10.34411 -10.03675 -9.79160 -9.57487 -8.62612 -4.97240 -0.01800 0.15390 0.48203 0.52871 0.74643 1.29666 1.71770 1.83376 1.93506 2.10992 2.88830 3.02836 3.23740 3.38117 3.54297 3.59526 3.62431 3.86968 3.96101 4.13330 4.16930 4.18390 4.29322 4.31149 4.32948 4.49417 4.50300 4.56142 4.62058 4.69420 4.74000 4.76196 4.84219 4.88352 4.95476 4.98013 5.02560 5.13872 5.17428 5.20035 5.36348 5.60798 5.65527 5.66945 5.71729 6.14089 6.28204 6.67267 6.91625 6.94613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.245 4.245 3 C 0.052 3.948 4 C -0.029 4.029 5 O -0.539 6.539 6 Si 0.787 3.213 7 N -0.574 5.574 8 C 0.309 3.691 9 N -0.678 5.678 10 C 0.130 3.870 11 H 0.116 0.884 12 C -0.136 4.136 13 C -0.039 4.039 14 C 0.099 3.901 15 O -0.586 6.586 16 C -0.056 4.056 17 C -0.118 4.118 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.131 4.131 21 C -0.125 4.125 22 C -0.117 4.117 23 S 0.121 5.879 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.394 0.606 29 H -0.293 1.293 30 H -0.302 1.302 31 H 0.414 0.586 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.396 0.604 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 -5.083 -0.408 5.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.368 4.368 3 C -0.078 4.078 4 C -0.142 4.142 5 O -0.346 6.346 6 Si 0.694 3.306 7 N -0.302 5.302 8 C -0.062 4.062 9 N -0.317 5.317 10 C 0.025 3.975 11 H 0.133 0.867 12 C -0.176 4.176 13 C -0.040 4.040 14 C 0.021 3.979 15 O -0.394 6.394 16 C -0.056 4.056 17 C -0.136 4.136 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.155 4.155 23 S 0.370 5.630 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.245 0.755 29 H -0.221 1.221 30 H -0.230 1.230 31 H 0.252 0.748 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.245 0.755 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.116 0.884 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.521 -4.537 -0.044 4.567 hybrid contribution 0.024 0.363 0.779 0.859 sum 0.545 -4.174 0.735 4.274 Atomic orbital electron populations 1.20233 0.85312 1.02984 1.03630 1.25404 1.02159 0.92878 1.16392 1.20239 0.86736 0.97679 1.03102 1.24399 0.92828 0.95240 1.01758 1.86472 1.28151 1.89748 1.30206 0.93235 0.74025 0.74256 0.89072 1.65973 1.17971 1.17744 1.28521 1.23567 0.92858 0.91514 0.98251 1.44110 1.01210 1.07224 1.79175 1.22753 0.98384 0.78641 0.97736 0.86675 1.23642 0.98478 0.98592 0.96852 1.20583 0.92063 0.94071 0.97250 1.21986 0.99578 0.87665 0.88660 1.86481 1.86051 1.26570 1.40268 1.19483 0.93983 0.98787 0.93327 1.21120 0.97329 1.00225 0.94899 1.21387 0.92972 1.00194 1.00590 1.21400 0.99377 1.00484 0.94358 1.21399 0.98002 1.00060 0.95387 1.21164 0.92241 1.00515 1.00390 1.23385 0.95367 0.97811 0.98924 1.83752 0.95619 1.09796 1.73856 0.89582 0.91834 0.89725 0.86939 0.75545 1.22113 1.22976 0.74754 0.90266 0.89382 0.92165 0.91499 0.75474 0.86132 0.85300 0.85114 0.84836 0.84940 0.88352 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.06 8.95 71.24 0.64 0.70 16 2 C -0.25 -0.67 6.50 24.58 0.16 -0.51 16 3 C 0.05 0.26 5.92 41.41 0.24 0.51 16 4 C -0.03 -0.09 2.82 71.24 0.20 0.11 16 5 O -0.54 0.02 9.91 -148.98 -1.48 -1.45 16 6 Si 0.79 2.93 32.09 68.60 2.20 5.13 16 7 N -0.57 -4.20 8.95 -189.86 -1.70 -5.90 16 8 C 0.31 1.12 8.24 179.32 1.48 2.60 16 9 N -0.68 0.50 5.52 -327.89 -1.81 -1.31 16 10 C 0.13 -0.61 3.85 45.52 0.18 -0.43 16 11 H 0.12 -0.69 6.63 -2.39 -0.02 -0.70 16 12 C -0.14 0.44 5.99 31.18 0.19 0.62 16 13 C -0.04 0.14 0.89 -52.34 -0.05 0.09 16 14 C 0.10 -0.50 6.39 71.98 0.46 -0.04 16 15 O -0.59 0.90 13.13 -148.98 -1.96 -1.05 16 16 C -0.06 -0.06 4.33 -19.87 -0.09 -0.14 16 17 C -0.12 -0.37 9.03 22.27 0.20 -0.17 16 18 C -0.13 -0.43 10.05 22.27 0.22 -0.20 16 19 C -0.14 -0.35 10.05 22.27 0.22 -0.13 16 20 C -0.13 -0.22 10.05 22.27 0.22 0.01 16 21 C -0.13 -0.10 9.39 22.27 0.21 0.11 16 22 C -0.12 0.72 6.63 31.12 0.21 0.92 16 23 S 0.12 0.10 21.71 -56.49 -1.23 -1.13 16 24 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.08 0.06 6.63 -2.39 -0.02 0.04 16 27 H 0.11 0.47 7.96 -2.39 -0.02 0.46 16 28 H 0.39 -2.85 8.68 -74.06 -0.64 -3.49 16 29 H -0.29 -2.54 7.11 99.48 0.71 -1.83 16 30 H -0.30 -3.64 7.11 99.48 0.71 -2.93 16 31 H 0.41 -0.46 8.84 -92.70 -0.82 -1.28 16 32 H 0.08 -0.19 8.10 -2.39 -0.02 -0.21 16 33 H 0.09 -0.12 7.45 -2.39 -0.02 -0.14 16 34 H 0.06 -0.41 8.14 -2.39 -0.02 -0.42 16 35 H 0.07 -0.55 7.35 -2.39 -0.02 -0.57 16 36 H 0.40 -3.68 9.12 -74.06 -0.68 -4.35 16 37 H 0.12 0.26 7.03 -2.91 -0.02 0.24 16 38 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 39 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 40 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 41 H 0.13 -0.40 8.03 -2.91 -0.02 -0.42 16 42 H 0.10 -0.53 8.06 -2.39 -0.02 -0.55 16 43 H 0.10 -0.87 8.10 -2.39 -0.02 -0.89 16 Total: 0.00 -17.28 365.16 -2.31 -19.59 By element: Atomic # 1 Polarization: -16.89 SS G_CDS: -1.04 Total: -17.93 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 4.70 Total: 4.05 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -3.51 Total: -7.21 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: -3.43 Total: -2.51 kcal Atomic # 14 Polarization: 2.93 SS G_CDS: 2.20 Total: 5.13 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.23 Total: -1.13 kcal Total: -17.28 -2.31 -19.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_15704122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.077 kcal (2) G-P(sol) polarization free energy of solvation -17.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds