Wall clock time and date at job start Mon Mar 8 2021 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.37978 * 120.32247 * 244.99859 * 4 2 1 6 6 N 1.32007 * 120.89915 * 179.97438 * 5 4 2 7 7 C 1.32338 * 121.64534 * 0.02562 * 6 5 4 8 8 N 1.39144 * 119.71689 * 180.02562 * 7 6 5 9 9 C 1.46503 * 120.00263 * 359.97438 * 8 7 6 10 10 H 1.09001 * 112.84767 * 25.33818 * 9 8 7 11 11 C 1.53784 * 113.61414 * 156.52953 * 9 8 7 12 12 C 1.53784 * 87.07702 * 139.98628 * 11 9 8 13 13 C 1.53000 * 113.61531 * 89.11874 * 12 11 9 14 14 O 1.42904 * 109.46807 * 179.97438 * 13 12 11 15 15 C 1.50704 * 113.60935 * 219.93674 * 12 11 9 16 16 C 1.38239 * 120.00113 * 359.72460 * 15 12 11 17 17 C 1.38240 * 119.99680 * 179.79156 * 16 15 12 18 18 C 1.38233 * 120.00129 * 0.43854 * 17 16 15 19 19 C 1.38243 * 120.00037 * 359.81836 * 18 17 16 20 20 C 1.38230 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.53782 * 113.61697 * 254.14005 * 9 8 7 22 22 C 1.39337 * 120.56446 * 359.97438 * 7 6 5 23 23 F 1.35101 * 120.47137 * 179.97438 * 22 7 6 24 24 C 1.38440 * 119.05767 * 359.72796 * 22 7 6 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 29 29 H 1.08000 * 119.55303 * 359.97438 * 5 4 2 30 30 H 0.97003 * 120.00007 * 180.02562 * 8 7 6 31 31 H 1.08998 * 113.61177 * 254.53291 * 11 9 8 32 32 H 1.08995 * 113.61479 * 25.43602 * 11 9 8 33 33 H 1.08992 * 109.46838 * 299.99171 * 13 12 11 34 34 H 1.08999 * 109.47035 * 59.99702 * 13 12 11 35 35 H 0.96693 * 113.99692 * 179.97438 * 14 13 12 36 36 H 1.07999 * 119.99955 * 0.02562 * 16 15 12 37 37 H 1.07991 * 119.99731 * 180.27244 * 17 16 15 38 38 H 1.08001 * 120.00056 * 179.83119 * 18 17 16 39 39 H 1.08000 * 120.00095 * 179.97438 * 19 18 17 40 40 H 1.08007 * 120.00206 * 180.02562 * 20 19 18 41 41 H 1.08995 * 113.61211 * 334.56581 * 21 9 8 42 42 H 1.09000 * 113.61017 * 105.47019 * 21 9 8 43 43 H 1.07999 * 120.76087 * 180.27203 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6379 -0.0201 2.1938 6 7 3.0827 -0.6308 3.2763 7 6 2.8716 -1.9210 3.4818 8 7 3.3582 -2.5240 4.6375 9 6 4.1009 -1.7313 5.6204 10 1 3.8473 -0.6717 5.5883 11 6 4.0771 -2.3277 7.0377 12 6 5.5550 -1.9180 7.1500 13 6 5.7590 -0.5018 7.6921 14 8 7.1573 -0.2147 7.7600 15 6 6.4137 -2.9411 7.8479 16 6 5.8489 -4.1112 8.3200 17 6 6.6374 -5.0516 8.9563 18 6 7.9889 -4.8179 9.1286 19 6 8.5527 -3.6454 8.6612 20 6 7.7650 -2.7070 8.0211 21 6 5.6146 -2.0029 5.6139 22 6 2.1655 -2.6805 2.5511 23 9 1.9516 -3.9976 2.7626 24 6 1.6818 -2.0651 1.4093 25 1 -0.3934 0.4418 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5616 2.4678 -1.2086 28 1 1.5878 2.4586 1.2241 29 1 2.8299 1.0343 2.0603 30 1 3.2062 -3.4695 4.7921 31 1 3.4222 -1.7927 7.7255 32 1 3.9204 -3.4062 7.0550 33 1 5.2725 0.2142 7.0299 34 1 5.3245 -0.4283 8.6890 35 1 7.3614 0.6689 8.0954 36 1 4.7924 -4.2923 8.1883 37 1 6.1970 -5.9676 9.3212 38 1 8.6044 -5.5514 9.6281 39 1 9.6085 -3.4626 8.7961 40 1 8.2055 -1.7911 7.6555 41 1 5.8790 -2.9924 5.2412 42 1 6.1991 -1.2060 5.1540 43 1 1.1272 -2.6266 0.6720 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13270512_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:50 Heat of formation + Delta-G solvation = -16.935423 kcal Electronic energy + Delta-G solvation = -27867.310626 eV Core-core repulsion = 23794.825512 eV Total energy + Delta-G solvation = -4072.485114 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.86322 -41.85456 -41.19534 -39.15187 -38.13526 -37.38840 -35.59245 -33.24142 -32.12511 -31.67794 -30.92647 -28.32532 -26.99980 -26.46107 -25.38831 -24.22593 -23.19200 -22.97896 -22.07232 -19.95384 -19.16288 -18.92112 -18.41895 -18.25221 -17.71898 -17.42272 -16.96647 -16.69326 -16.33015 -16.12477 -15.91098 -15.82594 -15.51550 -15.47610 -15.38912 -14.84803 -14.49405 -14.35317 -14.09853 -13.98260 -13.62591 -13.48637 -13.46388 -13.33786 -13.11544 -12.70050 -12.39727 -12.26576 -12.03104 -11.85154 -11.63993 -11.39171 -11.15538 -10.82538 -10.77791 -10.62336 -10.54367 -9.67312 -9.47248 -8.76399 -5.02062 -0.06812 0.11743 0.54880 0.65970 1.20580 1.51983 1.90844 1.96111 2.53702 2.83109 3.03990 3.07579 3.24448 3.33573 3.42361 3.49356 3.55111 3.70061 3.82467 3.86188 3.92853 3.99666 4.16897 4.24159 4.34286 4.38588 4.41914 4.42975 4.49778 4.53828 4.64128 4.70071 4.71065 4.76598 4.89524 4.96537 4.99044 5.01555 5.10869 5.22816 5.36475 5.43438 5.70672 5.81783 5.86898 5.94777 6.17046 6.25000 6.34406 6.62280 6.94557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.062 4.062 3 Si 0.684 3.316 4 C -0.208 4.208 5 C 0.146 3.854 6 N -0.512 5.512 7 C 0.392 3.608 8 N -0.705 5.705 9 C 0.136 3.864 10 H 0.120 0.880 11 C -0.140 4.140 12 C -0.038 4.038 13 C 0.101 3.899 14 O -0.562 6.562 15 C -0.068 4.068 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.021 4.021 23 F -0.134 7.134 24 C -0.037 4.037 25 H 0.376 0.624 26 H 0.120 0.880 27 H -0.254 1.254 28 H -0.256 1.256 29 H 0.163 0.837 30 H 0.413 0.587 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.378 0.622 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 2.294 1.228 2.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.172 4.172 3 Si 0.585 3.415 4 C -0.213 4.213 5 C -0.011 4.011 6 N -0.229 5.229 7 C 0.153 3.847 8 N -0.337 5.337 9 C 0.031 3.969 10 H 0.138 0.862 11 C -0.178 4.178 12 C -0.039 4.039 13 C 0.023 3.977 14 O -0.369 6.369 15 C -0.068 4.068 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.113 4.113 21 C -0.171 4.171 22 C -0.047 4.047 23 F -0.113 7.113 24 C -0.063 4.063 25 H 0.224 0.776 26 H 0.138 0.862 27 H -0.179 1.179 28 H -0.181 1.181 29 H 0.180 0.820 30 H 0.250 0.750 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.226 0.774 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.757 2.751 1.206 3.480 hybrid contribution -1.686 -0.919 0.329 1.948 sum 0.071 1.832 1.535 2.391 Atomic orbital electron populations 1.86617 1.17714 1.79935 1.49343 1.24831 0.83884 1.10831 0.97691 0.95052 0.91554 0.74263 0.80664 1.20850 1.05817 0.94585 1.00096 1.22393 0.91589 0.99517 0.87576 1.67292 1.24994 1.07289 1.23314 1.18465 0.90183 0.88976 0.87039 1.44600 1.58820 1.11857 1.18402 1.22545 0.90874 0.97053 0.86414 0.86202 1.23573 0.95212 1.02455 0.96546 1.20531 0.94355 0.93317 0.95684 1.21885 0.82690 0.93666 0.99419 1.86470 1.23233 1.38046 1.89160 1.19405 0.94045 0.94375 0.98958 1.21130 0.99799 0.94042 0.99178 1.21100 0.94143 0.99286 0.99837 1.21201 0.95281 0.97581 1.00059 1.21257 0.99962 0.94312 0.98999 1.21541 0.93197 0.99342 0.97250 1.23588 0.96546 1.03261 0.93719 1.18010 1.08616 0.79549 0.98531 1.91494 1.93660 1.31194 1.94906 1.21288 0.95516 0.94442 0.95094 0.77612 0.86240 1.17854 1.18114 0.82020 0.74997 0.90019 0.88408 0.92693 0.93074 0.77366 0.86123 0.86283 0.86353 0.86246 0.83533 0.89516 0.90148 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.20 12.84 -35.23 -0.45 -0.65 16 2 C -0.06 0.07 2.82 36.01 0.10 0.18 16 3 Si 0.68 -1.38 29.91 -169.99 -5.08 -6.47 16 4 C -0.21 0.09 5.36 -104.47 -0.56 -0.47 16 5 C 0.15 -0.04 9.83 -17.57 -0.17 -0.21 16 6 N -0.51 -0.67 9.15 -12.37 -0.11 -0.78 16 7 C 0.39 0.54 7.49 -154.86 -1.16 -0.62 16 8 N -0.71 0.07 5.51 -53.06 -0.29 -0.22 16 9 C 0.14 -0.12 3.89 -67.11 -0.26 -0.38 16 10 H 0.12 -0.05 6.96 -51.93 -0.36 -0.41 16 11 C -0.14 0.24 6.44 -25.92 -0.17 0.08 16 12 C -0.04 0.02 1.06 -154.75 -0.16 -0.14 16 13 C 0.10 -0.15 6.38 37.16 0.24 0.09 16 14 O -0.56 0.59 10.04 -35.23 -0.35 0.24 16 15 C -0.07 -0.09 5.05 -104.62 -0.53 -0.62 16 16 C -0.12 -0.14 9.20 -39.58 -0.36 -0.51 16 17 C -0.13 -0.18 10.05 -39.58 -0.40 -0.58 16 18 C -0.12 -0.21 10.05 -39.58 -0.40 -0.61 16 19 C -0.13 -0.25 10.05 -39.58 -0.40 -0.64 16 20 C -0.10 -0.20 8.84 -39.58 -0.35 -0.55 16 21 C -0.13 0.03 7.00 -25.83 -0.18 -0.15 16 22 C -0.02 -0.03 7.35 -39.10 -0.29 -0.32 16 23 F -0.13 -0.30 16.65 2.25 0.04 -0.26 16 24 C -0.04 -0.02 9.82 -39.26 -0.39 -0.41 16 25 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 26 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 27 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 28 H -0.26 0.10 7.01 56.52 0.40 0.50 16 29 H 0.16 -0.38 4.84 -52.49 -0.25 -0.63 16 30 H 0.41 -0.41 8.18 -40.82 -0.33 -0.75 16 31 H 0.08 -0.19 8.10 -51.93 -0.42 -0.61 16 32 H 0.10 -0.21 5.92 -51.93 -0.31 -0.51 16 33 H 0.05 -0.13 7.34 -51.93 -0.38 -0.51 16 34 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 35 H 0.38 -1.82 9.12 45.56 0.42 -1.40 16 36 H 0.12 -0.08 5.77 -52.49 -0.30 -0.38 16 37 H 0.12 -0.02 8.06 -52.49 -0.42 -0.45 16 38 H 0.12 0.01 8.06 -52.49 -0.42 -0.41 16 39 H 0.12 0.05 8.06 -52.49 -0.42 -0.37 16 40 H 0.15 0.29 5.44 -52.48 -0.29 0.01 16 41 H 0.09 0.06 8.10 -51.93 -0.42 -0.36 16 42 H 0.08 0.04 8.10 -51.93 -0.42 -0.38 16 43 H 0.15 -0.04 8.06 -52.49 -0.42 -0.47 16 LS Contribution 353.78 15.07 5.33 5.33 Total: 0.00 -6.67 353.78 -10.77 -17.44 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -4.41 Total: -8.76 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -5.44 Total: -5.87 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -0.41 Total: -1.00 kcal Atomic # 8 Polarization: 0.39 SS G_CDS: -0.81 Total: -0.41 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.26 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: -5.08 Total: -6.47 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -6.67 -10.77 -17.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.500 kcal (2) G-P(sol) polarization free energy of solvation -6.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds