Wall clock time and date at job start Mon Mar 8 2021 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.37978 * 120.32247 * 244.99859 * 4 2 1 6 6 N 1.32007 * 120.89915 * 179.97438 * 5 4 2 7 7 C 1.32338 * 121.64534 * 0.02562 * 6 5 4 8 8 N 1.39144 * 119.71689 * 180.02562 * 7 6 5 9 9 C 1.46503 * 120.00263 * 359.97438 * 8 7 6 10 10 H 1.09001 * 112.84767 * 25.33818 * 9 8 7 11 11 C 1.53784 * 113.61414 * 156.52953 * 9 8 7 12 12 C 1.53784 * 87.07702 * 139.98628 * 11 9 8 13 13 C 1.53000 * 113.61531 * 89.11874 * 12 11 9 14 14 O 1.42904 * 109.46807 * 179.97438 * 13 12 11 15 15 C 1.50704 * 113.60935 * 219.93674 * 12 11 9 16 16 C 1.38239 * 120.00113 * 359.72460 * 15 12 11 17 17 C 1.38240 * 119.99680 * 179.79156 * 16 15 12 18 18 C 1.38233 * 120.00129 * 0.43854 * 17 16 15 19 19 C 1.38243 * 120.00037 * 359.81836 * 18 17 16 20 20 C 1.38230 * 119.99757 * 359.97438 * 19 18 17 21 21 C 1.53782 * 113.61697 * 254.14005 * 9 8 7 22 22 C 1.39337 * 120.56446 * 359.97438 * 7 6 5 23 23 F 1.35101 * 120.47137 * 179.97438 * 22 7 6 24 24 C 1.38440 * 119.05767 * 359.72796 * 22 7 6 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 29 29 H 1.08000 * 119.55303 * 359.97438 * 5 4 2 30 30 H 0.97003 * 120.00007 * 180.02562 * 8 7 6 31 31 H 1.08998 * 113.61177 * 254.53291 * 11 9 8 32 32 H 1.08995 * 113.61479 * 25.43602 * 11 9 8 33 33 H 1.08992 * 109.46838 * 299.99171 * 13 12 11 34 34 H 1.08999 * 109.47035 * 59.99702 * 13 12 11 35 35 H 0.96693 * 113.99692 * 179.97438 * 14 13 12 36 36 H 1.07999 * 119.99955 * 0.02562 * 16 15 12 37 37 H 1.07991 * 119.99731 * 180.27244 * 17 16 15 38 38 H 1.08001 * 120.00056 * 179.83119 * 18 17 16 39 39 H 1.08000 * 120.00095 * 179.97438 * 19 18 17 40 40 H 1.08007 * 120.00206 * 180.02562 * 20 19 18 41 41 H 1.08995 * 113.61211 * 334.56581 * 21 9 8 42 42 H 1.09000 * 113.61017 * 105.47019 * 21 9 8 43 43 H 1.07999 * 120.76087 * 180.27203 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6379 -0.0201 2.1938 6 7 3.0827 -0.6308 3.2763 7 6 2.8716 -1.9210 3.4818 8 7 3.3582 -2.5240 4.6375 9 6 4.1009 -1.7313 5.6204 10 1 3.8473 -0.6717 5.5883 11 6 4.0771 -2.3277 7.0377 12 6 5.5550 -1.9180 7.1500 13 6 5.7590 -0.5018 7.6921 14 8 7.1573 -0.2147 7.7600 15 6 6.4137 -2.9411 7.8479 16 6 5.8489 -4.1112 8.3200 17 6 6.6374 -5.0516 8.9563 18 6 7.9889 -4.8179 9.1286 19 6 8.5527 -3.6454 8.6612 20 6 7.7650 -2.7070 8.0211 21 6 5.6146 -2.0029 5.6139 22 6 2.1655 -2.6805 2.5511 23 9 1.9516 -3.9976 2.7626 24 6 1.6818 -2.0651 1.4093 25 1 -0.3934 0.4418 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5616 2.4678 -1.2086 28 1 1.5878 2.4586 1.2241 29 1 2.8299 1.0343 2.0603 30 1 3.2062 -3.4695 4.7921 31 1 3.4222 -1.7927 7.7255 32 1 3.9204 -3.4062 7.0550 33 1 5.2725 0.2142 7.0299 34 1 5.3245 -0.4283 8.6890 35 1 7.3614 0.6689 8.0954 36 1 4.7924 -4.2923 8.1883 37 1 6.1970 -5.9676 9.3212 38 1 8.6044 -5.5514 9.6281 39 1 9.6085 -3.4626 8.7961 40 1 8.2055 -1.7911 7.6555 41 1 5.8790 -2.9924 5.2412 42 1 6.1991 -1.2060 5.1540 43 1 1.1272 -2.6266 0.6720 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13270512_17656566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:19:49 Heat of formation + Delta-G solvation = -13.962333 kcal Electronic energy + Delta-G solvation = -27867.181703 eV Core-core repulsion = 23794.825512 eV Total energy + Delta-G solvation = -4072.356191 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.96031 -41.82781 -41.19169 -39.17686 -38.10216 -37.27901 -35.56538 -33.25629 -32.14723 -31.74295 -30.93758 -28.24650 -26.94098 -26.40926 -25.37553 -24.23822 -23.24324 -22.98703 -22.07914 -19.93303 -19.14285 -18.88691 -18.40195 -18.21639 -17.70404 -17.43416 -17.02618 -16.68175 -16.28729 -16.08499 -15.87960 -15.80564 -15.53528 -15.43952 -15.40254 -14.86377 -14.48990 -14.34146 -14.12528 -14.02153 -13.60667 -13.48085 -13.45724 -13.33435 -13.06085 -12.66157 -12.36843 -12.24178 -12.04207 -11.80168 -11.64844 -11.33727 -11.12224 -10.76566 -10.71235 -10.63692 -10.53564 -9.76138 -9.54085 -8.76401 -4.87851 -0.08461 0.10035 0.47415 0.56751 1.32230 1.62720 1.98511 2.00114 2.52465 2.84635 3.02430 3.13882 3.27489 3.43229 3.47995 3.57898 3.60677 3.76341 3.85039 3.89557 3.98299 4.04812 4.16062 4.22076 4.39806 4.41280 4.44783 4.52733 4.56734 4.62338 4.69376 4.73977 4.76691 4.82119 4.85011 4.98872 5.01313 5.05388 5.10618 5.21691 5.30575 5.45016 5.63621 5.73307 5.79788 5.97904 6.18273 6.19208 6.51109 6.93942 6.94648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.068 4.068 3 Si 0.765 3.235 4 C -0.203 4.203 5 C 0.146 3.854 6 N -0.524 5.524 7 C 0.383 3.617 8 N -0.703 5.703 9 C 0.143 3.857 10 H 0.119 0.881 11 C -0.131 4.131 12 C -0.038 4.038 13 C 0.101 3.899 14 O -0.579 6.579 15 C -0.074 4.074 16 C -0.132 4.132 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.130 4.130 22 C -0.039 4.039 23 F -0.142 7.142 24 C -0.040 4.040 25 H 0.387 0.613 26 H 0.128 0.872 27 H -0.302 1.302 28 H -0.273 1.273 29 H 0.183 0.817 30 H 0.415 0.585 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.393 0.607 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 2.710 1.470 3.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.178 4.178 3 Si 0.670 3.330 4 C -0.208 4.208 5 C -0.011 4.011 6 N -0.241 5.241 7 C 0.145 3.855 8 N -0.335 5.335 9 C 0.037 3.963 10 H 0.136 0.864 11 C -0.169 4.169 12 C -0.038 4.038 13 C 0.023 3.977 14 O -0.388 6.388 15 C -0.074 4.074 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.128 4.128 21 C -0.169 4.169 22 C -0.065 4.065 23 F -0.121 7.121 24 C -0.067 4.067 25 H 0.236 0.764 26 H 0.145 0.855 27 H -0.230 1.230 28 H -0.199 1.199 29 H 0.199 0.801 30 H 0.253 0.747 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.162 0.838 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.453 3.152 1.475 3.771 hybrid contribution -1.591 -1.012 0.209 1.897 sum -0.138 2.139 1.684 2.726 Atomic orbital electron populations 1.86590 1.18533 1.80375 1.50211 1.25048 0.83326 1.11746 0.97663 0.94111 0.90205 0.71712 0.77008 1.20893 1.05496 0.94175 1.00263 1.22741 0.90925 1.00346 0.87055 1.67341 1.25520 1.07275 1.24009 1.18604 0.90349 0.89174 0.87412 1.44652 1.58557 1.12092 1.18169 1.22491 0.90115 0.96943 0.86701 0.86360 1.23541 0.94542 1.02830 0.95996 1.20571 0.94723 0.93548 0.94991 1.21915 0.82675 0.93274 0.99822 1.86423 1.23513 1.39461 1.89386 1.19642 0.94071 0.94916 0.98781 1.21392 1.00727 0.93896 0.98960 1.21385 0.94243 0.99986 0.99795 1.21437 0.95801 0.97868 1.00371 1.21472 1.00597 0.94596 0.99241 1.21659 0.93824 0.99495 0.97846 1.23511 0.97010 1.02250 0.94100 1.18156 1.09683 0.79394 0.99255 1.91466 1.93834 1.31737 1.95023 1.21445 0.95329 0.94974 0.94904 0.76407 0.85469 1.22960 1.19911 0.80084 0.74652 0.88916 0.87950 0.91607 0.92675 0.75637 0.84498 0.84862 0.85164 0.85411 0.83803 0.90662 0.91013 0.82851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.23 12.84 -148.98 -1.91 -2.15 16 2 C -0.07 0.20 2.82 71.24 0.20 0.40 16 3 Si 0.77 -3.53 29.91 68.60 2.05 -1.48 16 4 C -0.20 0.26 5.36 -19.76 -0.11 0.16 16 5 C 0.15 -0.17 9.83 84.60 0.83 0.66 16 6 N -0.52 -1.23 9.15 -193.04 -1.77 -2.99 16 7 C 0.38 1.14 7.49 133.08 1.00 2.13 16 8 N -0.70 0.01 5.51 -321.78 -1.77 -1.76 16 9 C 0.14 -0.27 3.89 45.52 0.18 -0.10 16 10 H 0.12 -0.15 6.96 -2.39 -0.02 -0.16 16 11 C -0.13 0.53 6.44 31.12 0.20 0.73 16 12 C -0.04 0.04 1.06 -52.34 -0.06 -0.01 16 13 C 0.10 -0.31 6.38 71.98 0.46 0.14 16 14 O -0.58 1.11 10.04 -148.98 -1.50 -0.39 16 15 C -0.07 -0.23 5.05 -19.86 -0.10 -0.33 16 16 C -0.13 -0.30 9.20 22.27 0.20 -0.10 16 17 C -0.14 -0.40 10.05 22.27 0.22 -0.18 16 18 C -0.14 -0.52 10.05 22.27 0.22 -0.30 16 19 C -0.14 -0.66 10.05 22.27 0.22 -0.44 16 20 C -0.11 -0.57 8.84 22.27 0.20 -0.37 16 21 C -0.13 -0.01 7.00 31.18 0.22 0.21 16 22 C -0.04 -0.14 7.35 22.58 0.17 0.03 16 23 F -0.14 -0.73 16.65 44.97 0.75 0.01 16 24 C -0.04 -0.05 9.82 22.48 0.22 0.17 16 25 H 0.39 -1.99 8.70 -74.06 -0.64 -2.63 16 26 H 0.13 -0.58 7.96 -2.39 -0.02 -0.60 16 27 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 28 H -0.27 0.49 7.01 99.48 0.70 1.19 16 29 H 0.18 -1.09 4.84 -2.91 -0.01 -1.10 16 30 H 0.42 -0.69 8.18 -92.71 -0.76 -1.45 16 31 H 0.09 -0.54 8.10 -2.39 -0.02 -0.56 16 32 H 0.10 -0.50 5.92 -2.39 -0.01 -0.51 16 33 H 0.07 -0.36 7.34 -2.39 -0.02 -0.38 16 34 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.39 -3.77 9.12 -74.06 -0.68 -4.45 16 36 H 0.14 -0.26 5.77 -2.91 -0.02 -0.27 16 37 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.13 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.13 0.23 8.06 -2.91 -0.02 0.20 16 40 H 0.14 0.73 5.44 -2.91 -0.02 0.72 16 41 H 0.07 0.18 8.10 -2.39 -0.02 0.16 16 42 H 0.07 0.13 8.10 -2.39 -0.02 0.11 16 43 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 Total: 0.00 -15.64 353.78 -0.83 -16.46 By element: Atomic # 1 Polarization: -9.57 SS G_CDS: -0.96 Total: -10.53 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 4.28 Total: 2.82 kcal Atomic # 7 Polarization: -1.21 SS G_CDS: -3.54 Total: -4.75 kcal Atomic # 8 Polarization: 0.87 SS G_CDS: -3.41 Total: -2.54 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.75 Total: 0.01 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.05 Total: -1.48 kcal Total: -15.64 -0.83 -16.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13270512_17656566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.500 kcal (2) G-P(sol) polarization free energy of solvation -15.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds