Wall clock time and date at job start Mon Mar 8 2021 05:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86305 * 109.46932 * 2 1 4 4 C 1.50697 * 109.47272 * 119.99663 * 2 1 3 5 5 C 1.38609 * 120.71876 * 65.00107 * 4 2 1 6 6 N 1.32277 * 119.19821 * 180.02562 * 5 4 2 7 7 C 1.32504 * 120.73849 * 359.97438 * 6 5 4 8 8 N 1.38409 * 119.21341 * 180.02562 * 7 6 5 9 9 C 1.46496 * 119.99536 * 180.02562 * 8 7 6 10 10 H 1.09001 * 112.85032 * 336.19722 * 9 8 7 11 11 C 1.53782 * 113.68971 * 107.46250 * 9 8 7 12 12 C 1.53962 * 87.11063 * 89.19569 * 11 9 8 13 13 H 1.08993 * 113.61598 * 270.84305 * 12 11 9 14 14 C 1.50700 * 113.66521 * 139.88647 * 12 11 9 15 15 C 1.38187 * 119.98859 * 322.28110 * 14 12 11 16 16 C 1.38236 * 120.04460 * 179.72381 * 15 14 12 17 17 C 1.38444 * 120.02548 * 0.54885 * 16 15 14 18 18 F 1.35101 * 120.00984 * 179.74830 * 17 16 15 19 19 C 1.38434 * 119.97895 * 359.72321 * 17 16 15 20 20 C 1.38398 * 119.94874 * 0.02562 * 19 17 16 21 21 F 1.35099 * 120.01483 * 179.97438 * 20 19 17 22 22 C 1.53781 * 113.61266 * 204.99825 * 9 8 7 23 23 N 1.32490 * 121.56591 * 0.27544 * 7 6 5 24 24 C 1.32280 * 120.73896 * 359.44635 * 23 7 6 25 25 H 0.96704 * 113.99881 * 300.00153 * 1 2 3 26 26 H 1.08994 * 109.47472 * 240.00090 * 2 1 3 27 27 H 1.48499 * 109.99975 * 178.68187 * 3 2 1 28 28 H 1.48497 * 109.99947 * 299.99616 * 3 2 1 29 29 H 1.07999 * 120.39963 * 0.04200 * 5 4 2 30 30 H 0.97001 * 119.99776 * 359.97438 * 8 7 6 31 31 H 1.08997 * 113.61668 * 203.67120 * 11 9 8 32 32 H 1.08998 * 113.61674 * 334.49629 * 11 9 8 33 33 H 1.07997 * 119.97552 * 359.97438 * 15 14 12 34 34 H 1.08004 * 119.98235 * 180.25310 * 16 15 14 35 35 H 1.08005 * 120.02489 * 180.02562 * 19 17 16 36 36 H 1.09002 * 113.61445 * 25.35018 * 22 9 8 37 37 H 1.09002 * 113.61408 * 156.16749 * 22 9 8 38 38 H 1.08000 * 120.40241 * 180.29891 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6926 -2.0633 1.4141 6 7 2.1469 -2.6564 2.5056 7 6 2.8233 -1.9721 3.4166 8 7 3.2847 -2.6246 4.5467 9 6 4.0338 -1.8846 5.5652 10 1 4.5144 -0.9895 5.1701 11 6 3.2396 -1.6374 6.8586 12 6 3.7886 -2.9853 7.3609 13 1 3.1630 -3.8376 7.0960 14 6 4.1798 -2.9746 8.8162 15 6 4.7759 -1.8542 9.3630 16 6 5.1300 -1.8410 10.6991 17 6 4.8981 -2.9546 11.4883 18 9 5.2489 -2.9432 12.7929 19 6 4.3060 -4.0796 10.9403 20 6 3.9472 -4.0899 9.6037 21 9 3.3698 -5.1872 9.0674 22 6 4.9723 -2.7687 6.4033 23 7 3.0643 -0.6772 3.2738 24 6 2.6425 -0.0250 2.2030 25 1 -0.3933 0.4417 0.7651 26 1 1.7924 -0.5138 -0.8899 27 1 3.5345 1.7704 0.0321 28 1 1.5615 2.4679 -1.2085 29 1 1.1425 -2.6264 0.6747 30 1 3.1113 -3.5717 4.6647 31 1 3.5950 -0.7817 7.4325 32 1 2.1594 -1.6304 6.7132 33 1 4.9616 -0.9869 8.7469 34 1 5.5922 -0.9633 11.1264 35 1 4.1243 -4.9486 11.5554 36 1 5.2908 -3.6763 5.8905 37 1 5.8022 -2.2223 6.8515 38 1 2.8461 1.0295 2.0898 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13428182_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:40 Heat of formation + Delta-G solvation = -2.876981 kcal Electronic energy + Delta-G solvation = -25396.486944 eV Core-core repulsion = 21263.951375 eV Total energy + Delta-G solvation = -4132.535569 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.04396 -50.00045 -42.17594 -41.16950 -39.22293 -38.02678 -35.57136 -34.71129 -32.55367 -31.89508 -31.18368 -27.01520 -26.89039 -26.16826 -25.59291 -24.31216 -23.33902 -22.83289 -20.50345 -19.67873 -19.25912 -18.57715 -18.25980 -18.04027 -17.25120 -17.02817 -16.79741 -16.59458 -16.43839 -16.32228 -16.09054 -15.78574 -15.60267 -15.49046 -15.26984 -15.00203 -14.60488 -14.17168 -14.08575 -13.89147 -13.67240 -13.55262 -13.18618 -13.00720 -12.64786 -12.24870 -12.15773 -12.02157 -11.86938 -11.78589 -11.46148 -11.22501 -10.60904 -10.17212 -10.03237 -9.65427 -9.15126 -5.13336 -0.17942 -0.10532 0.03810 0.13738 1.20265 1.54386 1.71500 1.90851 2.20376 2.78427 2.78705 3.07742 3.21659 3.35925 3.38580 3.40380 3.50774 3.55365 3.58911 3.68067 3.71730 3.74965 3.80599 3.96061 4.08463 4.16666 4.47075 4.47961 4.52924 4.62143 4.65157 4.70791 4.72958 4.81127 4.83690 4.88731 4.94763 4.96764 5.17446 5.29399 5.65510 5.76362 5.97852 6.36444 6.49548 7.26240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.046 4.046 3 Si 0.680 3.320 4 C -0.294 4.294 5 C 0.224 3.776 6 N -0.569 5.569 7 C 0.570 3.430 8 N -0.678 5.678 9 C 0.137 3.863 10 H 0.113 0.887 11 C -0.143 4.143 12 C -0.076 4.076 13 H 0.103 0.897 14 C -0.114 4.114 15 C -0.060 4.060 16 C -0.159 4.159 17 C 0.127 3.873 18 F -0.130 7.130 19 C -0.190 4.190 20 C 0.133 3.867 21 F -0.128 7.128 22 C -0.137 4.137 23 N -0.560 5.560 24 C 0.200 3.800 25 H 0.379 0.621 26 H 0.116 0.884 27 H -0.255 1.255 28 H -0.251 1.251 29 H 0.170 0.830 30 H 0.415 0.585 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 3.565 0.602 3.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.159 4.159 3 Si 0.582 3.418 4 C -0.302 4.302 5 C 0.055 3.945 6 N -0.290 5.290 7 C 0.214 3.786 8 N -0.314 5.314 9 C 0.031 3.969 10 H 0.131 0.869 11 C -0.181 4.181 12 C -0.094 4.094 13 H 0.121 0.879 14 C -0.115 4.115 15 C -0.078 4.078 16 C -0.178 4.178 17 C 0.108 3.892 18 F -0.109 7.109 19 C -0.210 4.210 20 C 0.114 3.886 21 F -0.107 7.107 22 C -0.175 4.175 23 N -0.282 5.282 24 C 0.032 3.968 25 H 0.226 0.774 26 H 0.133 0.867 27 H -0.180 1.180 28 H -0.175 1.175 29 H 0.187 0.813 30 H 0.253 0.747 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.542 3.416 0.635 3.801 hybrid contribution -0.360 -0.945 -0.539 1.146 sum 1.181 2.470 0.096 2.740 Atomic orbital electron populations 1.86516 1.17123 1.81639 1.49270 1.24705 0.85121 1.09639 0.96404 0.95021 0.81071 0.77740 0.87985 1.21722 1.09022 0.97833 1.01616 1.22847 0.89103 0.90977 0.91525 1.67987 1.16533 1.40020 1.04469 1.19336 0.86999 0.85526 0.86756 1.43818 1.58242 1.11836 1.17479 1.21810 0.92343 0.96008 0.86765 0.86922 1.23651 1.01446 0.96555 0.96493 1.21593 0.98571 0.99970 0.89300 0.87868 1.19804 1.02096 0.93313 0.96313 1.20769 0.95457 0.97528 0.94037 1.21255 1.03706 0.98473 0.94385 1.17335 0.98455 0.94615 0.78836 1.91560 1.89561 1.96840 1.32900 1.21085 1.04537 1.00245 0.95094 1.17157 0.96741 0.83777 0.90949 1.91534 1.81660 1.51390 1.86096 1.23485 0.96743 1.00971 0.96274 1.67897 1.26949 1.08252 1.25137 1.22771 0.88187 0.99207 0.86590 0.77361 0.86707 1.17973 1.17529 0.81258 0.74662 0.88363 0.90479 0.83645 0.83745 0.83315 0.90228 0.87952 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.54 12.85 -35.23 -0.45 0.09 16 2 C -0.05 0.07 2.83 36.00 0.10 0.17 16 3 Si 0.68 -1.56 29.88 -169.99 -5.08 -6.64 16 4 C -0.29 0.16 5.36 -104.35 -0.56 -0.40 16 5 C 0.22 0.16 10.99 -17.22 -0.19 -0.03 16 6 N -0.57 -1.35 10.46 -13.93 -0.15 -1.49 16 7 C 0.57 1.06 8.43 -322.79 -2.72 -1.66 16 8 N -0.68 0.14 5.42 -55.00 -0.30 -0.15 16 9 C 0.14 -0.25 4.33 -67.12 -0.29 -0.54 16 10 H 0.11 -0.14 7.37 -51.93 -0.38 -0.52 16 11 C -0.14 0.34 7.27 -25.82 -0.19 0.15 16 12 C -0.08 0.15 3.79 -90.86 -0.34 -0.19 16 13 H 0.10 -0.13 7.45 -51.93 -0.39 -0.52 16 14 C -0.11 0.11 5.30 -104.55 -0.55 -0.44 16 15 C -0.06 0.13 8.59 -39.60 -0.34 -0.21 16 16 C -0.16 0.21 10.02 -39.51 -0.40 -0.19 16 17 C 0.13 0.06 7.30 -39.43 -0.29 -0.23 16 18 F -0.13 -0.24 17.27 2.25 0.04 -0.20 16 19 C -0.19 -0.09 10.01 -39.45 -0.39 -0.48 16 20 C 0.13 0.08 7.24 -39.43 -0.29 -0.21 16 21 F -0.13 -0.22 16.36 2.25 0.04 -0.18 16 22 C -0.14 0.38 7.28 -25.92 -0.19 0.19 16 23 N -0.56 -0.78 9.13 -13.93 -0.13 -0.91 16 24 C 0.20 -0.08 9.92 -17.22 -0.17 -0.25 16 25 H 0.38 -1.76 8.70 45.56 0.40 -1.36 16 26 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 27 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 28 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 29 H 0.17 -0.16 8.06 -52.49 -0.42 -0.59 16 30 H 0.42 -0.38 8.82 -40.82 -0.36 -0.74 16 31 H 0.10 -0.36 6.32 -51.93 -0.33 -0.68 16 32 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.15 -0.67 6.67 -52.49 -0.35 -1.02 16 34 H 0.14 -0.44 8.06 -52.48 -0.42 -0.86 16 35 H 0.15 -0.08 8.06 -52.48 -0.42 -0.50 16 36 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 37 H 0.10 -0.38 7.71 -51.93 -0.40 -0.78 16 38 H 0.17 -0.52 5.07 -52.49 -0.27 -0.78 16 LS Contribution 330.78 15.07 4.98 4.98 Total: 0.00 -6.69 330.78 -11.65 -18.35 By element: Atomic # 1 Polarization: -5.73 SS G_CDS: -3.80 Total: -9.54 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -6.81 Total: -4.31 kcal Atomic # 7 Polarization: -1.98 SS G_CDS: -0.57 Total: -2.55 kcal Atomic # 8 Polarization: 0.54 SS G_CDS: -0.45 Total: 0.09 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.08 Total: -0.37 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: -5.08 Total: -6.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -6.69 -11.65 -18.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.471 kcal (2) G-P(sol) polarization free energy of solvation -6.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds