Wall clock time and date at job start Mon Mar 8 2021 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38018 * 120.33118 * 244.71842 * 4 2 1 6 6 N 1.31974 * 120.85660 * 179.73259 * 5 4 2 7 7 C 1.32400 * 121.61583 * 0.58171 * 6 5 4 8 8 N 1.39007 * 119.70598 * 179.70538 * 7 6 5 9 9 C 1.46498 * 120.00216 * 179.97438 * 8 7 6 10 10 H 1.08998 * 112.84753 * 336.19690 * 9 8 7 11 11 C 1.53777 * 113.61416 * 107.50292 * 9 8 7 12 12 C 1.53782 * 87.08206 * 89.11533 * 11 9 8 13 13 H 1.08997 * 113.61442 * 270.88053 * 12 11 9 14 14 C 1.50707 * 113.69291 * 139.98944 * 12 11 9 15 15 C 1.38183 * 119.98401 * 322.46833 * 14 12 11 16 16 C 1.38231 * 120.04803 * 180.02562 * 15 14 12 17 17 C 1.38449 * 120.02468 * 359.97302 * 16 15 14 18 18 F 1.35101 * 120.01419 * 179.97438 * 17 16 15 19 19 C 1.38441 * 119.97763 * 0.02562 * 17 16 15 20 20 C 1.38400 * 119.94575 * 359.76836 * 19 17 16 21 21 F 1.35101 * 120.01400 * 180.22939 * 20 19 17 22 22 C 1.53782 * 113.61049 * 205.00128 * 9 8 7 23 23 C 1.39137 * 120.59411 * 359.68676 * 7 6 5 24 24 C 1.38298 * 119.09192 * 0.02562 * 23 7 6 25 25 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 26 26 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 29 29 H 1.07997 * 119.57506 * 0.03054 * 5 4 2 30 30 H 0.97006 * 119.99427 * 359.97438 * 8 7 6 31 31 H 1.09005 * 113.61177 * 203.65941 * 11 9 8 32 32 H 1.09002 * 113.61770 * 334.56639 * 11 9 8 33 33 H 1.08001 * 119.98141 * 359.97438 * 15 14 12 34 34 H 1.08007 * 119.98843 * 179.97438 * 16 15 14 35 35 H 1.08004 * 120.02684 * 179.97438 * 19 17 16 36 36 H 1.08990 * 113.61996 * 25.43052 * 22 9 8 37 37 H 1.09006 * 113.61074 * 156.24918 * 22 9 8 38 38 H 1.08002 * 120.45606 * 180.02562 * 23 7 6 39 39 H 1.08008 * 120.74691 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6431 -0.0213 2.1915 6 7 3.0833 -0.6319 3.2755 7 6 2.8717 -1.9229 3.4793 8 7 3.3585 -2.5271 4.6326 9 6 3.1276 -3.9550 4.8649 10 1 2.2594 -4.3363 4.3275 11 6 4.3884 -4.8187 4.6938 12 6 4.6678 -4.5668 6.1849 13 1 5.2607 -3.6717 6.3729 14 6 5.1877 -5.7775 6.9165 15 6 4.6978 -7.0327 6.6101 16 6 5.1734 -8.1440 7.2807 17 6 6.1417 -8.0005 8.2598 18 9 6.6059 -9.0867 8.9155 19 6 6.6332 -6.7434 8.5676 20 6 6.1594 -5.6320 7.8926 21 9 6.6415 -4.4051 8.1886 22 6 3.1545 -4.3495 6.3510 23 6 2.1661 -2.6802 2.5495 24 6 1.6875 -2.0663 1.4064 25 1 -0.3934 0.4418 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5616 2.4678 -1.2086 28 1 1.5878 2.4586 1.2241 29 1 2.8385 1.0323 2.0568 30 1 3.8511 -2.0032 5.2836 31 1 4.1747 -5.8616 4.4597 32 1 5.1324 -4.3786 4.0297 33 1 3.9422 -7.1456 5.8467 34 1 4.7895 -9.1246 7.0407 35 1 7.3882 -6.6305 9.3316 36 1 2.9023 -3.5308 7.0248 37 1 2.6022 -5.2634 6.5701 38 1 1.9944 -3.7331 2.7181 39 1 1.1361 -2.6286 0.6672 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13428182_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:43 Heat of formation + Delta-G solvation = -13.199746 kcal Electronic energy + Delta-G solvation = -25237.012655 eV Core-core repulsion = 21169.455368 eV Total energy + Delta-G solvation = -4067.557287 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.09616 -50.04858 -41.63805 -40.85842 -39.11572 -37.94357 -35.35094 -33.41557 -32.06925 -31.71761 -30.71664 -26.78585 -26.70383 -25.75646 -24.77234 -24.22493 -23.08091 -22.39158 -20.19594 -19.37325 -18.87951 -18.52720 -18.20951 -17.46006 -17.08310 -17.06343 -16.76125 -16.45703 -16.38814 -16.25380 -16.01933 -15.63209 -15.51271 -15.28361 -15.05650 -14.77092 -14.31736 -14.02442 -13.95146 -13.75645 -13.53199 -13.42543 -13.28642 -12.89989 -12.57580 -12.43742 -12.05725 -11.97191 -11.83623 -11.28227 -11.03772 -10.73153 -10.52992 -10.36928 -10.10712 -9.60181 -8.68633 -4.90660 -0.12623 -0.03747 0.24562 0.43051 1.34607 1.60327 1.96489 2.08152 2.28450 2.82164 2.83222 3.31115 3.44599 3.47172 3.50099 3.60951 3.67023 3.69260 3.80423 3.87841 3.94818 4.00130 4.09685 4.10660 4.17226 4.38998 4.52787 4.65282 4.69620 4.76183 4.80001 4.84261 4.85779 4.91799 4.94137 5.03361 5.04817 5.10355 5.15877 5.30902 5.38342 5.59628 5.72709 6.08310 6.51123 6.53720 7.16505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.061 4.061 3 Si 0.753 3.247 4 C -0.233 4.233 5 C 0.142 3.858 6 N -0.569 5.569 7 C 0.397 3.603 8 N -0.705 5.705 9 C 0.129 3.871 10 H 0.118 0.882 11 C -0.139 4.139 12 C -0.077 4.077 13 H 0.088 0.912 14 C -0.111 4.111 15 C -0.052 4.052 16 C -0.153 4.153 17 C 0.106 3.894 18 F -0.143 7.143 19 C -0.201 4.201 20 C 0.110 3.890 21 F -0.142 7.142 22 C -0.127 4.127 23 C -0.238 4.238 24 C -0.012 4.012 25 H 0.384 0.616 26 H 0.127 0.873 27 H -0.301 1.301 28 H -0.285 1.285 29 H 0.163 0.837 30 H 0.404 0.596 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.180 0.820 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.157 0.843 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 -3.777 -1.673 4.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.171 4.171 3 Si 0.659 3.341 4 C -0.239 4.239 5 C -0.014 4.014 6 N -0.287 5.287 7 C 0.161 3.839 8 N -0.336 5.336 9 C 0.023 3.977 10 H 0.135 0.865 11 C -0.177 4.177 12 C -0.096 4.096 13 H 0.106 0.894 14 C -0.112 4.112 15 C -0.070 4.070 16 C -0.172 4.172 17 C 0.086 3.914 18 F -0.121 7.121 19 C -0.220 4.220 20 C 0.090 3.910 21 F -0.120 7.120 22 C -0.165 4.165 23 C -0.262 4.262 24 C -0.037 4.037 25 H 0.233 0.767 26 H 0.145 0.855 27 H -0.229 1.229 28 H -0.212 1.212 29 H 0.179 0.821 30 H 0.240 0.760 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.197 0.803 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.174 0.826 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.958 -2.982 -1.526 3.484 hybrid contribution -0.635 -0.035 0.838 1.052 sum -1.593 -3.017 -0.689 3.480 Atomic orbital electron populations 1.86565 1.18706 1.80250 1.50131 1.24856 0.83123 1.10875 0.98237 0.94217 0.90605 0.72901 0.76385 1.20950 1.06721 0.96274 0.99911 1.22448 0.91739 0.99585 0.87654 1.67140 1.27076 1.10071 1.24380 1.18638 0.89466 0.88321 0.87461 1.44318 1.59855 1.09071 1.20366 1.21980 0.98957 0.79205 0.97543 0.86458 1.23688 0.97935 1.02112 0.93990 1.21517 0.97146 0.94739 0.96177 0.89369 1.20018 0.96840 0.97381 0.96947 1.21110 0.98577 0.88846 0.98457 1.21557 0.97147 1.02406 0.96048 1.17586 0.96889 0.82254 0.94623 1.91525 1.87723 1.52987 1.79895 1.21161 1.05133 0.91176 1.04547 1.17416 0.96493 0.79483 0.97589 1.91497 1.87031 1.41035 1.92453 1.23463 0.94004 1.03507 0.95554 1.21728 1.05762 1.02486 0.96215 1.21439 0.93091 0.93408 0.95800 0.76659 0.85544 1.22867 1.21203 0.82059 0.76020 0.86145 0.91532 0.80314 0.81716 0.83475 0.90959 0.86166 0.82552 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.97 12.84 -148.98 -1.91 -2.88 16 2 C -0.06 0.07 2.82 71.24 0.20 0.27 16 3 Si 0.75 -1.12 29.90 68.60 2.05 0.93 16 4 C -0.23 -0.04 5.36 -19.76 -0.11 -0.15 16 5 C 0.14 0.33 9.84 84.62 0.83 1.16 16 6 N -0.57 -3.04 10.39 -193.26 -2.01 -5.05 16 7 C 0.40 0.73 7.65 133.06 1.02 1.75 16 8 N -0.71 1.53 5.43 -322.05 -1.75 -0.22 16 9 C 0.13 -1.00 4.11 45.52 0.19 -0.81 16 10 H 0.12 -1.24 6.10 -2.39 -0.01 -1.26 16 11 C -0.14 1.14 7.25 31.12 0.23 1.37 16 12 C -0.08 0.42 3.78 -11.01 -0.04 0.37 16 13 H 0.09 -0.17 7.44 -2.39 -0.02 -0.19 16 14 C -0.11 0.36 5.30 -19.81 -0.10 0.25 16 15 C -0.05 0.38 8.61 22.26 0.19 0.57 16 16 C -0.15 0.69 10.02 22.32 0.22 0.92 16 17 C 0.11 0.10 7.30 22.37 0.16 0.27 16 18 F -0.14 -0.59 17.27 44.97 0.78 0.19 16 19 C -0.20 -0.38 10.01 22.36 0.22 -0.15 16 20 C 0.11 0.19 7.24 22.37 0.16 0.35 16 21 F -0.14 -0.70 16.36 44.97 0.74 0.04 16 22 C -0.13 1.04 7.29 31.12 0.23 1.27 16 23 C -0.24 0.33 9.29 22.50 0.21 0.54 16 24 C -0.01 0.01 9.83 22.44 0.22 0.23 16 25 H 0.38 -1.22 8.70 -74.06 -0.64 -1.86 16 26 H 0.13 -0.42 7.96 -2.39 -0.02 -0.44 16 27 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 28 H -0.29 -0.79 7.02 99.48 0.70 -0.09 16 29 H 0.16 -0.13 4.85 -2.91 -0.01 -0.14 16 30 H 0.40 -0.54 8.83 -92.70 -0.82 -1.36 16 31 H 0.12 -1.54 6.32 -2.38 -0.02 -1.55 16 32 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.18 -2.58 6.66 -2.91 -0.02 -2.60 16 34 H 0.17 -1.46 8.06 -2.91 -0.02 -1.48 16 35 H 0.15 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.12 -1.40 7.73 -2.38 -0.02 -1.42 16 38 H 0.16 -1.05 6.04 -2.91 -0.02 -1.06 16 39 H 0.15 -0.56 8.06 -2.91 -0.02 -0.58 16 Total: 0.00 -16.00 333.10 1.42 -14.58 By element: Atomic # 1 Polarization: -15.50 SS G_CDS: -0.30 Total: -15.80 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 3.83 Total: 8.22 kcal Atomic # 7 Polarization: -1.50 SS G_CDS: -3.76 Total: -5.26 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -1.91 Total: -2.88 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 1.51 Total: 0.23 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.05 Total: 0.93 kcal Total: -16.00 1.42 -14.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.378 kcal (2) G-P(sol) polarization free energy of solvation -15.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds