Wall clock time and date at job start Mon Mar 8 2021 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.33326 * 125.95303 * 300.00076 * 4 2 1 6 6 N 1.32116 * 114.58306 * 180.02562 * 5 4 2 7 7 C 1.29688 * 116.86560 * 359.97438 * 6 5 4 8 8 N 1.38607 * 124.95348 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99860 * 0.02562 * 8 7 6 10 10 H 1.09004 * 112.85129 * 336.20321 * 9 8 7 11 11 C 1.53782 * 113.60951 * 107.50393 * 9 8 7 12 12 C 1.53778 * 87.08097 * 89.12203 * 11 9 8 13 13 H 1.09003 * 113.61034 * 270.88224 * 12 11 9 14 14 C 1.50695 * 113.69311 * 139.99162 * 12 11 9 15 15 C 1.38184 * 119.99039 * 322.46068 * 14 12 11 16 16 C 1.38230 * 120.05466 * 179.97438 * 15 14 12 17 17 C 1.38450 * 120.02286 * 359.97438 * 16 15 14 18 18 F 1.35100 * 120.01313 * 179.97438 * 17 16 15 19 19 C 1.38438 * 119.97560 * 359.97438 * 17 16 15 20 20 C 1.38397 * 119.95157 * 359.77484 * 19 17 16 21 21 F 1.35100 * 120.01670 * 180.22712 * 20 19 17 22 22 C 1.53774 * 113.61684 * 205.00080 * 9 8 7 23 23 S 1.70972 * 110.09787 * 359.73163 * 7 6 5 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 26 26 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 27 27 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 28 28 H 1.08003 * 122.70894 * 0.02562 * 5 4 2 29 29 H 0.97001 * 120.00378 * 180.02562 * 8 7 6 30 30 H 1.09006 * 113.61281 * 203.66324 * 11 9 8 31 31 H 1.08993 * 113.61870 * 334.56902 * 11 9 8 32 32 H 1.08001 * 119.97318 * 359.97438 * 15 14 12 33 33 H 1.07999 * 119.98985 * 180.02562 * 16 15 14 34 34 H 1.08001 * 120.02632 * 180.02562 * 19 17 16 35 35 H 1.08998 * 113.61790 * 25.44057 * 22 9 8 36 36 H 1.09008 * 113.61542 * 156.25307 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6835 -1.9789 -1.5579 6 7 2.2385 -2.3727 -2.6904 7 6 2.9431 -1.4946 -3.3341 8 7 3.5964 -1.7259 -4.5345 9 6 3.5182 -3.0442 -5.1687 10 1 3.2979 -3.8426 -4.4600 11 6 2.6319 -3.0715 -6.4252 12 6 3.8917 -2.7022 -7.2260 13 1 4.0521 -1.6279 -7.3165 14 6 4.0046 -3.4238 -8.5441 15 6 3.6044 -4.7425 -8.6461 16 6 3.7068 -5.4055 -9.8547 17 6 4.2102 -4.7487 -10.9646 18 9 4.3108 -5.3971 -12.1456 19 6 4.6105 -3.4273 -10.8639 20 6 4.5026 -2.7629 -9.6547 21 9 4.8886 -1.4720 -9.5560 22 6 4.7057 -3.3534 -6.0954 23 16 2.9420 -0.0075 -2.4905 24 1 -0.3934 0.4418 0.7650 25 1 1.7923 -0.5138 0.8901 26 1 1.5616 2.4678 -1.2086 27 1 1.5878 2.4586 1.2241 28 1 1.0779 -2.6318 -0.9468 29 1 4.1054 -1.0151 -4.9546 30 1 2.2391 -4.0607 -6.6610 31 1 1.8652 -2.2970 -6.4357 32 1 3.2112 -5.2555 -7.7809 33 1 3.3933 -6.4360 -9.9333 34 1 5.0029 -2.9140 -11.7294 35 1 5.6132 -2.8065 -5.8397 36 1 4.8808 -4.4196 -6.2399 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13428182_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:47 Heat of formation + Delta-G solvation = -10.385299 kcal Electronic energy + Delta-G solvation = -23762.408590 eV Core-core repulsion = 19784.125593 eV Total energy + Delta-G solvation = -3978.282997 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.05137 -49.99826 -41.44254 -40.45298 -39.13686 -37.90548 -35.33518 -32.08927 -31.77267 -31.02264 -26.96501 -26.80971 -26.13227 -24.65566 -24.12116 -23.01123 -21.26517 -20.16669 -19.44896 -19.17582 -18.59892 -18.25087 -17.72230 -17.04588 -17.02207 -16.79338 -16.59803 -16.32739 -16.07159 -15.71657 -15.55608 -15.46089 -15.25087 -15.06920 -14.50898 -14.16024 -13.96673 -13.84103 -13.66110 -13.54755 -13.02833 -12.81897 -12.64833 -12.40000 -12.30082 -12.14805 -11.96441 -11.44394 -11.12141 -10.66739 -10.25616 -10.16987 -10.12697 -9.65048 -8.71279 -5.07866 -0.17778 -0.10288 -0.02794 0.07516 0.71137 1.23089 1.52873 1.90048 2.05066 2.10366 2.20756 2.78464 3.19482 3.33515 3.35350 3.39672 3.51028 3.54331 3.66707 3.73860 3.81045 3.93902 3.98715 4.09972 4.39873 4.48085 4.54451 4.61523 4.67891 4.71845 4.78696 4.80852 4.83927 4.89392 4.94107 4.97336 5.14494 5.28174 5.65692 5.86743 6.04973 6.39592 7.03928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.018 4.018 3 Si 0.650 3.350 4 C -0.260 4.260 5 C 0.118 3.882 6 N -0.547 5.547 7 C 0.325 3.675 8 N -0.676 5.676 9 C 0.138 3.862 10 H 0.110 0.890 11 C -0.144 4.144 12 C -0.076 4.076 13 H 0.103 0.897 14 C -0.114 4.114 15 C -0.060 4.060 16 C -0.159 4.159 17 C 0.127 3.873 18 F -0.130 7.130 19 C -0.190 4.190 20 C 0.133 3.867 21 F -0.129 7.129 22 C -0.135 4.135 23 S 0.098 5.902 24 H 0.381 0.619 25 H 0.084 0.916 26 H -0.239 1.239 27 H -0.241 1.241 28 H 0.175 0.825 29 H 0.415 0.585 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.080 0.920 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -0.246 2.501 3.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.131 4.131 3 Si 0.549 3.451 4 C -0.382 4.382 5 C -0.033 4.033 6 N -0.272 5.272 7 C -0.045 4.045 8 N -0.315 5.315 9 C 0.030 3.970 10 H 0.128 0.872 11 C -0.183 4.183 12 C -0.094 4.094 13 H 0.121 0.879 14 C -0.115 4.115 15 C -0.078 4.078 16 C -0.178 4.178 17 C 0.108 3.892 18 F -0.109 7.109 19 C -0.210 4.210 20 C 0.113 3.887 21 F -0.107 7.107 22 C -0.174 4.174 23 S 0.348 5.652 24 H 0.229 0.771 25 H 0.102 0.898 26 H -0.163 1.163 27 H -0.165 1.165 28 H 0.192 0.808 29 H 0.252 0.748 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.098 0.902 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.671 0.612 1.450 3.100 hybrid contribution -1.296 -0.260 0.403 1.382 sum 1.374 0.352 1.852 2.333 Atomic orbital electron populations 1.86614 1.17729 1.79967 1.49892 1.23703 0.84104 1.09720 0.95571 0.95254 0.91698 0.75468 0.82674 1.24328 1.12660 0.97943 1.03319 1.21289 0.96994 0.93278 0.91720 1.66464 1.16852 1.33639 1.10281 1.23663 0.95258 0.93468 0.92109 1.43673 1.54552 1.14024 1.19279 1.21851 0.96187 0.85086 0.93848 0.87161 1.23633 0.96431 1.03263 0.94983 1.21567 0.98241 0.99861 0.89772 0.87921 1.19802 1.01984 0.95114 0.94629 1.20774 0.96749 0.92751 0.97507 1.21258 1.02774 1.01851 0.91912 1.17337 0.99831 0.90201 0.81869 1.91560 1.93740 1.80939 1.44616 1.21081 1.06390 0.94631 0.98854 1.17149 0.98828 0.79187 0.93488 1.91529 1.88486 1.34045 1.96654 1.23482 0.97493 1.02464 0.93940 1.83963 1.51340 1.12983 1.16959 0.77075 0.89789 1.16297 1.16470 0.80766 0.74761 0.88422 0.90430 0.83659 0.83747 0.83314 0.90172 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.55 12.84 -35.23 -0.45 -1.00 16 2 C -0.02 0.00 2.98 36.01 0.11 0.11 16 3 Si 0.65 -0.37 31.05 -169.99 -5.28 -5.65 16 4 C -0.26 -0.43 5.78 -36.02 -0.21 -0.64 16 5 C 0.12 0.29 11.22 -19.14 -0.21 0.08 16 6 N -0.55 -1.69 9.83 -15.21 -0.15 -1.84 16 7 C 0.33 0.45 8.09 -87.68 -0.71 -0.26 16 8 N -0.68 0.68 5.42 -54.99 -0.30 0.38 16 9 C 0.14 -0.23 4.44 -67.12 -0.30 -0.53 16 10 H 0.11 -0.05 7.66 -51.93 -0.40 -0.44 16 11 C -0.14 0.28 7.25 -25.92 -0.19 0.09 16 12 C -0.08 0.16 3.78 -90.96 -0.34 -0.19 16 13 H 0.10 -0.18 7.44 -51.93 -0.39 -0.57 16 14 C -0.11 0.11 5.30 -104.55 -0.55 -0.45 16 15 C -0.06 0.12 8.61 -39.60 -0.34 -0.22 16 16 C -0.16 0.17 10.02 -39.51 -0.40 -0.22 16 17 C 0.13 0.08 7.30 -39.43 -0.29 -0.21 16 18 F -0.13 -0.25 17.27 2.25 0.04 -0.21 16 19 C -0.19 -0.09 10.01 -39.45 -0.39 -0.48 16 20 C 0.13 0.07 7.25 -39.43 -0.29 -0.22 16 21 F -0.13 -0.18 16.36 2.25 0.04 -0.15 16 22 C -0.14 0.40 7.29 -25.92 -0.19 0.21 16 23 S 0.10 0.06 20.57 -107.50 -2.21 -2.15 16 24 H 0.38 -1.20 8.74 45.56 0.40 -0.80 16 25 H 0.08 -0.17 7.96 -51.92 -0.41 -0.58 16 26 H -0.24 -0.62 7.11 56.52 0.40 -0.22 16 27 H -0.24 -0.18 7.11 56.52 0.40 0.22 16 28 H 0.18 0.20 8.06 -52.48 -0.42 -0.22 16 29 H 0.41 -1.19 8.83 -40.82 -0.36 -1.55 16 30 H 0.10 -0.28 6.32 -51.93 -0.33 -0.61 16 31 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.15 -0.61 6.66 -52.49 -0.35 -0.96 16 33 H 0.14 -0.40 8.06 -52.49 -0.42 -0.82 16 34 H 0.15 -0.08 8.06 -52.49 -0.42 -0.51 16 35 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 36 H 0.10 -0.37 7.73 -51.92 -0.40 -0.77 16 LS Contribution 328.67 15.07 4.95 4.95 Total: 0.00 -6.34 328.67 -11.21 -17.56 By element: Atomic # 1 Polarization: -5.40 SS G_CDS: -3.55 Total: -8.95 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -4.30 Total: -2.93 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: -0.45 Total: -1.46 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -0.45 Total: -1.00 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.08 Total: -0.36 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.28 Total: -5.65 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.21 Total: -2.15 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -6.34 -11.21 -17.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.171 kcal (2) G-P(sol) polarization free energy of solvation -6.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds