Wall clock time and date at job start Mon Mar 8 2021 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.33326 * 125.95303 * 300.00076 * 4 2 1 6 6 N 1.32116 * 114.58306 * 180.02562 * 5 4 2 7 7 C 1.29688 * 116.86560 * 359.97438 * 6 5 4 8 8 N 1.38607 * 124.95348 * 180.02562 * 7 6 5 9 9 C 1.46499 * 119.99860 * 0.02562 * 8 7 6 10 10 H 1.09004 * 112.85129 * 336.20321 * 9 8 7 11 11 C 1.53782 * 113.60951 * 107.50393 * 9 8 7 12 12 C 1.53778 * 87.08097 * 89.12203 * 11 9 8 13 13 H 1.09003 * 113.61034 * 270.88224 * 12 11 9 14 14 C 1.50695 * 113.69311 * 139.99162 * 12 11 9 15 15 C 1.38184 * 119.99039 * 322.46068 * 14 12 11 16 16 C 1.38230 * 120.05466 * 179.97438 * 15 14 12 17 17 C 1.38450 * 120.02286 * 359.97438 * 16 15 14 18 18 F 1.35100 * 120.01313 * 179.97438 * 17 16 15 19 19 C 1.38438 * 119.97560 * 359.97438 * 17 16 15 20 20 C 1.38397 * 119.95157 * 359.77484 * 19 17 16 21 21 F 1.35100 * 120.01670 * 180.22712 * 20 19 17 22 22 C 1.53774 * 113.61684 * 205.00080 * 9 8 7 23 23 S 1.70972 * 110.09787 * 359.73163 * 7 6 5 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 26 26 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 27 27 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 28 28 H 1.08003 * 122.70894 * 0.02562 * 5 4 2 29 29 H 0.97001 * 120.00378 * 180.02562 * 8 7 6 30 30 H 1.09006 * 113.61281 * 203.66324 * 11 9 8 31 31 H 1.08993 * 113.61870 * 334.56902 * 11 9 8 32 32 H 1.08001 * 119.97318 * 359.97438 * 15 14 12 33 33 H 1.07999 * 119.98985 * 180.02562 * 16 15 14 34 34 H 1.08001 * 120.02632 * 180.02562 * 19 17 16 35 35 H 1.08998 * 113.61790 * 25.44057 * 22 9 8 36 36 H 1.09008 * 113.61542 * 156.25307 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6835 -1.9789 -1.5579 6 7 2.2385 -2.3727 -2.6904 7 6 2.9431 -1.4946 -3.3341 8 7 3.5964 -1.7259 -4.5345 9 6 3.5182 -3.0442 -5.1687 10 1 3.2979 -3.8426 -4.4600 11 6 2.6319 -3.0715 -6.4252 12 6 3.8917 -2.7022 -7.2260 13 1 4.0521 -1.6279 -7.3165 14 6 4.0046 -3.4238 -8.5441 15 6 3.6044 -4.7425 -8.6461 16 6 3.7068 -5.4055 -9.8547 17 6 4.2102 -4.7487 -10.9646 18 9 4.3108 -5.3971 -12.1456 19 6 4.6105 -3.4273 -10.8639 20 6 4.5026 -2.7629 -9.6547 21 9 4.8886 -1.4720 -9.5560 22 6 4.7057 -3.3534 -6.0954 23 16 2.9420 -0.0075 -2.4905 24 1 -0.3934 0.4418 0.7650 25 1 1.7923 -0.5138 0.8901 26 1 1.5616 2.4678 -1.2086 27 1 1.5878 2.4586 1.2241 28 1 1.0779 -2.6318 -0.9468 29 1 4.1054 -1.0151 -4.9546 30 1 2.2391 -4.0607 -6.6610 31 1 1.8652 -2.2970 -6.4357 32 1 3.2112 -5.2555 -7.7809 33 1 3.3933 -6.4360 -9.9333 34 1 5.0029 -2.9140 -11.7294 35 1 5.6132 -2.8065 -5.8397 36 1 4.8808 -4.4196 -6.2399 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13428182_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:46 Heat of formation + Delta-G solvation = -5.125306 kcal Electronic energy + Delta-G solvation = -23762.180500 eV Core-core repulsion = 19784.125593 eV Total energy + Delta-G solvation = -3978.054907 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.069 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.08902 -50.05184 -41.35762 -40.48573 -39.06924 -37.91028 -35.30471 -32.04621 -31.72390 -31.01987 -26.91388 -26.67788 -26.09243 -24.63687 -24.09786 -22.96128 -21.23704 -20.15295 -19.43274 -19.15885 -18.59591 -18.23174 -17.71202 -17.06109 -16.97520 -16.76605 -16.55098 -16.38559 -16.08897 -15.74227 -15.56383 -15.47657 -15.19200 -14.99726 -14.52454 -14.10525 -13.98040 -13.74442 -13.54259 -13.46164 -12.99883 -12.83227 -12.57059 -12.45792 -12.37799 -12.01703 -11.87846 -11.31041 -11.09025 -10.68719 -10.30249 -10.18866 -10.11153 -9.60828 -8.72363 -5.04687 -0.13574 -0.08416 -0.04137 0.03458 0.65598 1.23995 1.53024 1.89035 1.96747 2.15038 2.27587 2.81460 3.29804 3.42332 3.43963 3.48757 3.61929 3.66016 3.70849 3.87308 3.94371 3.96319 4.08518 4.19338 4.48782 4.60628 4.68520 4.74241 4.74956 4.81435 4.83921 4.90099 4.90936 5.01629 5.07067 5.08125 5.18478 5.36938 5.71880 5.89573 6.14605 6.59559 7.00208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.024 4.024 3 Si 0.716 3.284 4 C -0.271 4.271 5 C 0.103 3.897 6 N -0.572 5.572 7 C 0.318 3.682 8 N -0.669 5.669 9 C 0.136 3.864 10 H 0.101 0.899 11 C -0.139 4.139 12 C -0.074 4.074 13 H 0.098 0.902 14 C -0.111 4.111 15 C -0.055 4.055 16 C -0.154 4.154 17 C 0.107 3.893 18 F -0.142 7.142 19 C -0.199 4.199 20 C 0.114 3.886 21 F -0.139 7.139 22 C -0.123 4.123 23 S 0.110 5.890 24 H 0.397 0.603 25 H 0.108 0.892 26 H -0.286 1.286 27 H -0.256 1.256 28 H 0.180 0.820 29 H 0.423 0.577 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.622 -0.899 3.336 4.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.136 4.136 3 Si 0.619 3.381 4 C -0.394 4.394 5 C -0.048 4.048 6 N -0.298 5.298 7 C -0.052 4.052 8 N -0.309 5.309 9 C 0.028 3.972 10 H 0.119 0.881 11 C -0.178 4.178 12 C -0.092 4.092 13 H 0.116 0.884 14 C -0.112 4.112 15 C -0.072 4.072 16 C -0.173 4.173 17 C 0.087 3.913 18 F -0.121 7.121 19 C -0.218 4.218 20 C 0.095 3.905 21 F -0.117 7.117 22 C -0.161 4.161 23 S 0.359 5.641 24 H 0.248 0.752 25 H 0.126 0.874 26 H -0.212 1.212 27 H -0.180 1.180 28 H 0.197 0.803 29 H 0.262 0.738 30 H 0.129 0.871 31 H 0.081 0.919 32 H 0.190 0.810 33 H 0.181 0.819 34 H 0.168 0.832 35 H 0.102 0.898 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.913 -0.044 2.291 3.706 hybrid contribution -1.406 -0.029 0.122 1.412 sum 1.507 -0.073 2.413 2.845 Atomic orbital electron populations 1.86567 1.18338 1.80456 1.51276 1.23901 0.83775 1.10136 0.95821 0.94505 0.90679 0.73705 0.79251 1.24606 1.12757 0.98006 1.03989 1.21456 0.97508 0.93861 0.91982 1.66462 1.17876 1.34549 1.10923 1.23870 0.95127 0.93593 0.92631 1.43779 1.53922 1.14666 1.18540 1.21881 0.97168 0.84479 0.93681 0.88118 1.23634 0.95978 1.03527 0.94709 1.21544 0.98513 0.99673 0.89486 0.88386 1.19982 1.01193 0.95543 0.94486 1.21075 0.95855 0.92246 0.98060 1.21528 1.01624 1.02649 0.91473 1.17566 1.01138 0.90451 0.82098 1.91524 1.94008 1.81130 1.45422 1.21162 1.06650 0.94903 0.99120 1.17341 1.00030 0.79053 0.94122 1.91499 1.88775 1.34710 1.96724 1.23451 0.96963 1.03227 0.92454 1.83862 1.51084 1.12464 1.16646 0.75177 0.87437 1.21236 1.18038 0.80269 0.73780 0.87061 0.91912 0.80961 0.81933 0.83227 0.89767 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.06 12.84 -148.98 -1.91 -2.98 16 2 C -0.02 0.01 2.98 71.24 0.21 0.22 16 3 Si 0.72 -0.83 31.05 68.60 2.13 1.30 16 4 C -0.27 -0.95 5.78 24.57 0.14 -0.81 16 5 C 0.10 0.56 11.22 83.54 0.94 1.50 16 6 N -0.57 -3.82 9.83 -202.02 -1.99 -5.81 16 7 C 0.32 0.98 8.09 179.32 1.45 2.43 16 8 N -0.67 1.35 5.42 -327.90 -1.78 -0.43 16 9 C 0.14 -0.51 4.44 45.52 0.20 -0.31 16 10 H 0.10 -0.12 7.66 -2.39 -0.02 -0.14 16 11 C -0.14 0.62 7.25 31.12 0.23 0.84 16 12 C -0.07 0.35 3.78 -11.02 -0.04 0.30 16 13 H 0.10 -0.34 7.44 -2.39 -0.02 -0.36 16 14 C -0.11 0.27 5.30 -19.82 -0.10 0.16 16 15 C -0.05 0.29 8.61 22.25 0.19 0.48 16 16 C -0.15 0.47 10.02 22.32 0.22 0.70 16 17 C 0.11 0.17 7.30 22.37 0.16 0.33 16 18 F -0.14 -0.66 17.27 44.97 0.78 0.11 16 19 C -0.20 -0.38 10.01 22.36 0.22 -0.15 16 20 C 0.11 0.18 7.25 22.37 0.16 0.34 16 21 F -0.14 -0.53 16.36 44.97 0.74 0.20 16 22 C -0.12 0.86 7.29 31.12 0.23 1.09 16 23 S 0.11 0.17 20.57 -56.49 -1.16 -0.99 16 24 H 0.40 -2.64 8.74 -74.06 -0.65 -3.29 16 25 H 0.11 -0.55 7.96 -2.38 -0.02 -0.57 16 26 H -0.29 -1.86 7.11 99.48 0.71 -1.15 16 27 H -0.26 -0.29 7.11 99.48 0.71 0.42 16 28 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 29 H 0.42 -2.46 8.83 -92.71 -0.82 -3.28 16 30 H 0.11 -0.81 6.32 -2.38 -0.02 -0.82 16 31 H 0.06 -0.06 8.14 -2.39 -0.02 -0.07 16 32 H 0.17 -1.90 6.66 -2.91 -0.02 -1.92 16 33 H 0.16 -1.15 8.06 -2.91 -0.02 -1.17 16 34 H 0.15 0.08 8.06 -2.91 -0.02 0.05 16 35 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.12 -1.08 7.73 -2.38 -0.02 -1.10 16 Total: 0.00 -15.72 328.67 0.75 -14.97 By element: Atomic # 1 Polarization: -13.26 SS G_CDS: -0.27 Total: -13.53 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 4.21 Total: 7.14 kcal Atomic # 7 Polarization: -2.47 SS G_CDS: -3.76 Total: -6.24 kcal Atomic # 8 Polarization: -1.06 SS G_CDS: -1.91 Total: -2.98 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 1.51 Total: 0.32 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.13 Total: 1.30 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.16 Total: -0.99 kcal Total: -15.72 0.75 -14.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.847 kcal (2) G-P(sol) polarization free energy of solvation -15.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds