Wall clock time and date at job start Mon Mar 8 2021 05:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50698 * 122.70970 * 359.96842 * 3 2 1 5 5 O 1.42899 * 109.47211 * 329.99295 * 4 3 2 6 6 Si 1.86298 * 109.46823 * 209.99520 * 4 3 2 7 7 N 1.32119 * 114.57801 * 179.78988 * 3 2 1 8 8 C 1.29689 * 116.86437 * 0.51639 * 7 3 2 9 9 N 1.38618 * 124.94915 * 179.71194 * 8 7 3 10 10 C 1.46502 * 119.99978 * 180.02562 * 9 8 7 11 11 H 1.09000 * 112.84630 * 334.66836 * 10 9 8 12 12 C 1.53771 * 113.61271 * 105.86815 * 10 9 8 13 13 C 1.54047 * 86.98844 * 89.16052 * 12 10 9 14 14 H 1.09003 * 113.69071 * 270.87215 * 13 12 10 15 15 C 1.50695 * 113.62218 * 139.97729 * 13 12 10 16 16 C 1.38462 * 119.99008 * 142.50888 * 15 13 12 17 17 F 1.35097 * 120.00913 * 0.02562 * 16 15 13 18 18 C 1.38440 * 119.97398 * 179.97438 * 16 15 13 19 19 C 1.38396 * 119.94911 * 359.97438 * 18 16 15 20 20 F 1.35100 * 120.01130 * 179.97438 * 19 18 16 21 21 C 1.38489 * 119.97925 * 0.02562 * 19 18 16 22 22 C 1.38190 * 120.02277 * 359.72210 * 21 19 18 23 23 C 1.53776 * 87.07629 * 25.42825 * 13 12 10 24 24 S 1.70968 * 110.10458 * 359.72434 * 8 7 3 25 25 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 27 27 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 28 28 H 1.09000 * 109.47546 * 89.99738 * 4 3 2 29 29 H 0.96701 * 114.00118 * 300.00202 * 5 4 3 30 30 H 1.48501 * 110.00099 * 58.68030 * 6 4 3 31 31 H 1.48500 * 110.00352 * 179.97438 * 6 4 3 32 32 H 0.96993 * 119.99650 * 0.03733 * 9 8 7 33 33 H 1.09000 * 113.61795 * 203.66503 * 12 10 9 34 34 H 1.08999 * 113.61548 * 334.56540 * 12 10 9 35 35 H 1.07997 * 120.02104 * 180.02562 * 18 16 15 36 36 H 1.08001 * 119.98766 * 179.97438 * 21 19 18 37 37 H 1.08002 * 119.97247 * 180.29787 * 22 21 19 38 38 H 1.09002 * 113.62038 * 220.02489 * 23 13 12 39 39 H 1.09009 * 113.68922 * 89.13119 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0007 5 8 0.4817 2.5019 -0.6750 6 14 2.9327 3.6146 -0.8786 7 7 3.5850 0.8188 0.0044 8 6 3.9315 -0.4309 -0.0023 9 7 5.2385 -0.8926 -0.0049 10 6 5.5066 -2.3328 -0.0132 11 1 4.6915 -2.9175 0.4132 12 6 5.9981 -2.8601 -1.3715 13 6 7.4255 -2.5432 -0.8864 14 1 7.7520 -1.5294 -1.1185 15 6 8.4405 -3.5877 -1.2730 16 6 9.7205 -3.2070 -1.6388 17 9 10.0596 -1.8993 -1.6486 18 6 10.6529 -4.1669 -1.9934 19 6 10.3044 -5.5063 -1.9814 20 9 11.2132 -6.4441 -2.3277 21 6 9.0236 -5.8848 -1.6152 22 6 8.0953 -4.9261 -1.2563 23 6 6.8899 -2.7050 0.5460 24 16 2.5413 -1.4261 -0.0078 25 1 -0.3633 -1.0277 -0.0051 26 1 -0.3633 0.5183 -0.8874 27 1 -0.3633 0.5094 0.8926 28 1 1.6086 2.8218 1.0268 29 1 0.5244 2.2118 -1.5965 30 1 3.1469 3.1451 -2.2711 31 1 2.4033 5.0020 -0.8868 32 1 5.9755 -0.2620 -0.0011 33 1 5.8135 -3.9240 -1.5197 34 1 5.6780 -2.2521 -2.2176 35 1 11.6516 -3.8709 -2.2785 36 1 8.7514 -6.9299 -1.6061 37 1 7.0981 -5.2226 -0.9663 38 1 7.2892 -1.9720 1.2470 39 1 6.9483 -3.7264 0.9226 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13428182_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:50 Heat of formation + Delta-G solvation = -16.290124 kcal Electronic energy + Delta-G solvation = -25912.462326 eV Core-core repulsion = 21778.385657 eV Total energy + Delta-G solvation = -4134.076669 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.08971 -50.04218 -41.53398 -40.90178 -39.32925 -37.81394 -35.43060 -32.74906 -31.98318 -31.46790 -29.20748 -27.05560 -26.40279 -25.54839 -24.55548 -24.17468 -23.14448 -20.97643 -20.55152 -19.37853 -18.89175 -18.34325 -17.90572 -17.79260 -17.08014 -17.00038 -16.82739 -16.60889 -16.49315 -16.36139 -15.67730 -15.64141 -15.51701 -15.27200 -15.13688 -14.39755 -14.14284 -14.05305 -13.88739 -13.78732 -13.70085 -13.58828 -13.44630 -13.04102 -12.78478 -12.68189 -12.33397 -12.23774 -12.01406 -11.79983 -11.62346 -10.99513 -10.60927 -10.49962 -10.22210 -10.01010 -9.70812 -8.64859 -4.66444 -0.23486 -0.15517 0.00866 0.16379 0.76888 1.38655 1.76807 1.83399 1.95639 2.11842 2.14872 2.73595 3.05579 3.26259 3.26990 3.32106 3.33792 3.45710 3.52195 3.59320 3.73540 3.85626 3.97546 4.12433 4.21534 4.33062 4.39416 4.45844 4.57950 4.59789 4.64529 4.71174 4.74345 4.78224 4.78960 4.81622 4.89623 4.90901 5.06260 5.13506 5.28313 5.58098 5.60633 6.21331 6.37366 6.93822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.242 4.242 3 C 0.067 3.933 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.537 5.537 8 C 0.321 3.679 9 N -0.677 5.677 10 C 0.126 3.874 11 H 0.099 0.901 12 C -0.147 4.147 13 C -0.073 4.073 14 H 0.106 0.894 15 C -0.116 4.116 16 C 0.135 3.865 17 F -0.128 7.128 18 C -0.190 4.190 19 C 0.128 3.872 20 F -0.130 7.130 21 C -0.159 4.159 22 C -0.060 4.060 23 C -0.131 4.131 24 S 0.103 5.897 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.375 0.625 30 H -0.268 1.268 31 H -0.261 1.261 32 H 0.415 0.585 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -3.800 1.206 3.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.364 4.364 3 C -0.063 4.063 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.622 3.378 7 N -0.263 5.263 8 C -0.050 4.050 9 N -0.317 5.317 10 C 0.020 3.980 11 H 0.117 0.883 12 C -0.186 4.186 13 C -0.091 4.091 14 H 0.124 0.876 15 C -0.117 4.117 16 C 0.115 3.885 17 F -0.106 7.106 18 C -0.209 4.209 19 C 0.109 3.891 20 F -0.108 7.108 21 C -0.178 4.178 22 C -0.078 4.078 23 C -0.169 4.169 24 S 0.352 5.648 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.223 0.777 30 H -0.192 1.192 31 H -0.186 1.186 32 H 0.253 0.747 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.103 0.897 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.280 -3.891 1.103 4.054 hybrid contribution -0.236 0.433 -0.761 0.907 sum 0.044 -3.458 0.342 3.475 Atomic orbital electron populations 1.20149 0.86444 1.01684 1.03653 1.25152 1.01337 0.92864 1.17069 1.20068 0.86802 0.97154 1.02282 1.24462 0.91883 0.95363 1.03687 1.86624 1.28633 1.89031 1.28815 0.93623 0.86147 0.76436 0.81617 1.65721 1.17056 1.16450 1.27079 1.23230 0.91636 0.91472 0.98681 1.43565 1.01901 1.06108 1.80126 1.21939 0.98489 0.80069 0.97536 0.88304 1.23747 0.94269 1.02649 0.97982 1.21570 0.92725 0.98027 0.96826 0.87571 1.19773 0.93317 0.95507 1.03119 1.17148 0.92882 0.78130 1.00312 1.91538 1.92612 1.32583 1.93871 1.21096 1.01852 0.91443 1.06541 1.17344 0.87280 0.85343 0.99144 1.91564 1.66025 1.63857 1.89360 1.21255 0.91948 1.01745 1.02871 1.20752 0.99773 0.90595 0.96703 1.23432 0.93704 1.03743 0.96020 1.83956 0.96411 1.10491 1.73965 0.92280 0.90190 0.90537 0.85832 0.77675 1.19236 1.18617 0.74667 0.88115 0.89994 0.83261 0.83729 0.83723 0.89718 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.00 8.92 36.01 0.32 0.32 16 2 C -0.24 -0.35 6.50 -36.02 -0.23 -0.59 16 3 C 0.07 0.14 5.91 -84.18 -0.50 -0.36 16 4 C -0.04 -0.05 2.94 36.00 0.11 0.06 16 5 O -0.53 -0.55 10.17 -35.23 -0.36 -0.91 16 6 Si 0.72 0.90 32.09 -169.99 -5.45 -4.55 16 7 N -0.54 -1.25 8.95 -11.36 -0.10 -1.35 16 8 C 0.32 0.29 8.24 -87.67 -0.72 -0.43 16 9 N -0.68 1.03 5.42 -54.99 -0.30 0.73 16 10 C 0.13 -0.43 4.28 -67.12 -0.29 -0.71 16 11 H 0.10 -0.36 7.11 -51.93 -0.37 -0.73 16 12 C -0.15 0.53 7.27 -25.78 -0.19 0.34 16 13 C -0.07 0.22 3.79 -90.82 -0.34 -0.12 16 14 H 0.11 -0.24 7.44 -51.93 -0.39 -0.63 16 15 C -0.12 0.21 5.30 -104.54 -0.55 -0.34 16 16 C 0.13 -0.01 7.25 -39.42 -0.29 -0.30 16 17 F -0.13 -0.13 16.36 2.25 0.04 -0.09 16 18 C -0.19 0.02 10.01 -39.45 -0.39 -0.38 16 19 C 0.13 0.00 7.30 -39.43 -0.29 -0.29 16 20 F -0.13 -0.18 17.27 2.25 0.04 -0.14 16 21 C -0.16 0.30 10.02 -39.51 -0.40 -0.09 16 22 C -0.06 0.18 8.59 -39.60 -0.34 -0.16 16 23 C -0.13 0.53 7.28 -25.92 -0.19 0.34 16 24 S 0.10 0.02 21.71 -107.50 -2.33 -2.31 16 25 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 26 H 0.08 -0.05 6.37 -51.93 -0.33 -0.38 16 27 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.12 0.05 7.96 -51.93 -0.41 -0.36 16 29 H 0.38 -0.51 8.13 45.56 0.37 -0.14 16 30 H -0.27 -1.07 7.11 56.52 0.40 -0.67 16 31 H -0.26 -0.93 7.11 56.52 0.40 -0.53 16 32 H 0.41 -0.88 8.83 -40.82 -0.36 -1.24 16 33 H 0.10 -0.50 6.33 -51.93 -0.33 -0.83 16 34 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 35 H 0.15 -0.15 8.06 -52.49 -0.42 -0.57 16 36 H 0.14 -0.51 8.06 -52.49 -0.42 -0.94 16 37 H 0.15 -0.80 6.68 -52.49 -0.35 -1.15 16 38 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 39 H 0.10 -0.53 7.72 -51.92 -0.40 -0.93 16 LS Contribution 345.04 15.07 5.20 5.20 Total: 0.00 -5.56 345.04 -11.87 -17.43 By element: Atomic # 1 Polarization: -6.99 SS G_CDS: -4.30 Total: -11.29 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -4.29 Total: -2.72 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: -0.40 Total: -0.61 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -0.36 Total: -0.91 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.08 Total: -0.24 kcal Atomic # 14 Polarization: 0.90 SS G_CDS: -5.45 Total: -4.55 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.33 Total: -2.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -5.56 -11.87 -17.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.136 kcal (2) G-P(sol) polarization free energy of solvation -5.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds