Wall clock time and date at job start Mon Mar 8 2021 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50698 * 122.70970 * 359.96842 * 3 2 1 5 5 O 1.42899 * 109.47211 * 329.99295 * 4 3 2 6 6 Si 1.86298 * 109.46823 * 209.99520 * 4 3 2 7 7 N 1.32119 * 114.57801 * 179.78988 * 3 2 1 8 8 C 1.29689 * 116.86437 * 0.51639 * 7 3 2 9 9 N 1.38618 * 124.94915 * 179.71194 * 8 7 3 10 10 C 1.46502 * 119.99978 * 180.02562 * 9 8 7 11 11 H 1.09000 * 112.84630 * 334.66836 * 10 9 8 12 12 C 1.53771 * 113.61271 * 105.86815 * 10 9 8 13 13 C 1.54047 * 86.98844 * 89.16052 * 12 10 9 14 14 H 1.09003 * 113.69071 * 270.87215 * 13 12 10 15 15 C 1.50695 * 113.62218 * 139.97729 * 13 12 10 16 16 C 1.38462 * 119.99008 * 142.50888 * 15 13 12 17 17 F 1.35097 * 120.00913 * 0.02562 * 16 15 13 18 18 C 1.38440 * 119.97398 * 179.97438 * 16 15 13 19 19 C 1.38396 * 119.94911 * 359.97438 * 18 16 15 20 20 F 1.35100 * 120.01130 * 179.97438 * 19 18 16 21 21 C 1.38489 * 119.97925 * 0.02562 * 19 18 16 22 22 C 1.38190 * 120.02277 * 359.72210 * 21 19 18 23 23 C 1.53776 * 87.07629 * 25.42825 * 13 12 10 24 24 S 1.70968 * 110.10458 * 359.72434 * 8 7 3 25 25 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 26 26 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 27 27 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 28 28 H 1.09000 * 109.47546 * 89.99738 * 4 3 2 29 29 H 0.96701 * 114.00118 * 300.00202 * 5 4 3 30 30 H 1.48501 * 110.00099 * 58.68030 * 6 4 3 31 31 H 1.48500 * 110.00352 * 179.97438 * 6 4 3 32 32 H 0.96993 * 119.99650 * 0.03733 * 9 8 7 33 33 H 1.09000 * 113.61795 * 203.66503 * 12 10 9 34 34 H 1.08999 * 113.61548 * 334.56540 * 12 10 9 35 35 H 1.07997 * 120.02104 * 180.02562 * 18 16 15 36 36 H 1.08001 * 119.98766 * 179.97438 * 21 19 18 37 37 H 1.08002 * 119.97247 * 180.29787 * 22 21 19 38 38 H 1.09002 * 113.62038 * 220.02489 * 23 13 12 39 39 H 1.09009 * 113.68922 * 89.13119 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0007 5 8 0.4817 2.5019 -0.6750 6 14 2.9327 3.6146 -0.8786 7 7 3.5850 0.8188 0.0044 8 6 3.9315 -0.4309 -0.0023 9 7 5.2385 -0.8926 -0.0049 10 6 5.5066 -2.3328 -0.0132 11 1 4.6915 -2.9175 0.4132 12 6 5.9981 -2.8601 -1.3715 13 6 7.4255 -2.5432 -0.8864 14 1 7.7520 -1.5294 -1.1185 15 6 8.4405 -3.5877 -1.2730 16 6 9.7205 -3.2070 -1.6388 17 9 10.0596 -1.8993 -1.6486 18 6 10.6529 -4.1669 -1.9934 19 6 10.3044 -5.5063 -1.9814 20 9 11.2132 -6.4441 -2.3277 21 6 9.0236 -5.8848 -1.6152 22 6 8.0953 -4.9261 -1.2563 23 6 6.8899 -2.7050 0.5460 24 16 2.5413 -1.4261 -0.0078 25 1 -0.3633 -1.0277 -0.0051 26 1 -0.3633 0.5183 -0.8874 27 1 -0.3633 0.5094 0.8926 28 1 1.6086 2.8218 1.0268 29 1 0.5244 2.2118 -1.5965 30 1 3.1469 3.1451 -2.2711 31 1 2.4033 5.0020 -0.8868 32 1 5.9755 -0.2620 -0.0011 33 1 5.8135 -3.9240 -1.5197 34 1 5.6780 -2.2521 -2.2176 35 1 11.6516 -3.8709 -2.2785 36 1 8.7514 -6.9299 -1.6061 37 1 7.0981 -5.2226 -0.9663 38 1 7.2892 -1.9720 1.2470 39 1 6.9483 -3.7264 0.9226 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13428182_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:49 Heat of formation + Delta-G solvation = -8.961128 kcal Electronic energy + Delta-G solvation = -25912.144517 eV Core-core repulsion = 21778.385657 eV Total energy + Delta-G solvation = -4133.758859 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.08489 -50.04463 -41.37394 -40.88462 -39.18599 -37.85338 -35.35144 -32.71504 -31.85506 -31.35047 -29.23542 -26.75327 -26.25526 -25.54681 -24.48716 -24.10387 -23.00652 -20.91139 -20.43875 -19.31889 -18.84721 -18.26602 -17.94913 -17.69340 -17.05813 -16.89219 -16.75397 -16.62913 -16.38442 -16.34924 -15.76612 -15.52927 -15.50386 -15.17925 -14.97173 -14.27699 -14.26058 -13.90441 -13.85105 -13.68761 -13.58746 -13.44857 -13.39487 -12.94884 -12.76415 -12.57401 -12.45136 -12.01706 -11.99882 -11.80048 -11.38973 -10.91091 -10.65052 -10.54781 -10.10278 -10.02741 -9.59962 -8.61969 -4.79969 -0.12595 -0.03142 -0.01979 0.16602 0.73849 1.28662 1.65287 1.82050 1.90192 1.99321 2.28615 2.82758 3.27696 3.28270 3.43312 3.48133 3.50202 3.58218 3.65957 3.84222 3.92593 4.07963 4.14680 4.15875 4.33105 4.42660 4.55575 4.66863 4.74172 4.79667 4.81774 4.84408 4.88526 4.91399 4.91753 5.01624 5.04713 5.08481 5.13661 5.28980 5.33364 5.72509 5.74192 6.29127 6.42536 6.93151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.258 4.258 3 C 0.054 3.946 4 C -0.039 4.039 5 O -0.532 6.532 6 Si 0.778 3.222 7 N -0.560 5.560 8 C 0.312 3.688 9 N -0.672 5.672 10 C 0.123 3.877 11 H 0.108 0.892 12 C -0.140 4.140 13 C -0.076 4.076 14 H 0.094 0.906 15 C -0.111 4.111 16 C 0.112 3.888 17 F -0.140 7.140 18 C -0.201 4.201 19 C 0.106 3.894 20 F -0.143 7.143 21 C -0.153 4.153 22 C -0.053 4.053 23 C -0.121 4.121 24 S 0.129 5.871 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.131 0.869 29 H 0.385 0.615 30 H -0.306 1.306 31 H -0.293 1.293 32 H 0.416 0.584 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.179 0.821 38 H 0.081 0.919 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -5.346 1.929 5.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.381 4.381 3 C -0.076 4.076 4 C -0.152 4.152 5 O -0.339 6.339 6 Si 0.684 3.316 7 N -0.288 5.288 8 C -0.059 4.059 9 N -0.312 5.312 10 C 0.017 3.983 11 H 0.126 0.874 12 C -0.179 4.179 13 C -0.094 4.094 14 H 0.112 0.888 15 C -0.112 4.112 16 C 0.092 3.908 17 F -0.119 7.119 18 C -0.220 4.220 19 C 0.087 3.913 20 F -0.122 7.122 21 C -0.172 4.172 22 C -0.070 4.070 23 C -0.158 4.158 24 S 0.378 5.622 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.234 0.766 30 H -0.233 1.233 31 H -0.220 1.220 32 H 0.255 0.745 33 H 0.140 0.860 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.196 0.804 38 H 0.100 0.900 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.721 -5.457 1.834 5.802 hybrid contribution 0.100 0.897 -1.038 1.375 sum -0.621 -4.560 0.797 4.671 Atomic orbital electron populations 1.20157 0.85710 1.02204 1.03644 1.25400 1.02127 0.93435 1.17116 1.20171 0.87022 0.97551 1.02832 1.24442 0.91640 0.95112 1.03995 1.86599 1.28587 1.89074 1.29662 0.92910 0.85420 0.73923 0.79304 1.65716 1.17316 1.17388 1.28355 1.23495 0.92675 0.91500 0.98269 1.43756 1.01166 1.07080 1.79192 1.22083 0.99194 0.79021 0.97961 0.87399 1.23763 0.93302 1.03659 0.97207 1.21573 0.92761 0.97170 0.97941 0.88790 1.19982 0.92648 0.96460 1.02086 1.17390 0.93897 0.77648 1.01818 1.91500 1.92837 1.33401 1.94156 1.21161 1.02062 0.91822 1.06983 1.17596 0.88073 0.85088 1.00578 1.91524 1.66687 1.64228 1.89729 1.21549 0.91055 1.03065 1.01541 1.21110 1.00894 0.89577 0.95439 1.23432 0.92620 1.04705 0.95091 1.83747 0.95397 1.09384 1.73649 0.91481 0.89710 0.91010 0.85125 0.76596 1.23299 1.22042 0.74523 0.85992 0.91321 0.83482 0.81803 0.80376 0.89987 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.02 8.92 71.24 0.64 0.66 16 2 C -0.26 -0.69 6.50 24.58 0.16 -0.53 16 3 C 0.05 0.24 5.91 41.40 0.24 0.48 16 4 C -0.04 -0.10 2.94 71.24 0.21 0.11 16 5 O -0.53 -1.22 10.17 -148.98 -1.51 -2.74 16 6 Si 0.78 2.86 32.09 68.60 2.20 5.06 16 7 N -0.56 -2.74 8.95 -189.85 -1.70 -4.44 16 8 C 0.31 0.46 8.24 179.32 1.48 1.94 16 9 N -0.67 2.36 5.42 -327.90 -1.78 0.58 16 10 C 0.12 -1.02 4.28 45.51 0.19 -0.83 16 11 H 0.11 -1.04 7.11 -2.39 -0.02 -1.06 16 12 C -0.14 1.23 7.27 31.21 0.23 1.46 16 13 C -0.08 0.52 3.79 -10.93 -0.04 0.48 16 14 H 0.09 -0.39 7.44 -2.39 -0.02 -0.40 16 15 C -0.11 0.48 5.30 -19.81 -0.10 0.38 16 16 C 0.11 0.07 7.25 22.37 0.16 0.24 16 17 F -0.14 -0.51 16.36 44.97 0.74 0.22 16 18 C -0.20 -0.22 10.01 22.36 0.22 0.00 16 19 C 0.11 0.04 7.30 22.37 0.16 0.21 16 20 F -0.14 -0.54 17.27 44.97 0.78 0.24 16 21 C -0.15 0.77 10.02 22.32 0.22 1.00 16 22 C -0.05 0.42 8.59 22.26 0.19 0.61 16 23 C -0.12 1.18 7.28 31.12 0.23 1.41 16 24 S 0.13 -0.05 21.71 -56.49 -1.23 -1.28 16 25 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 26 H 0.08 -0.14 6.37 -2.39 -0.02 -0.15 16 27 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 28 H 0.13 0.13 7.96 -2.39 -0.02 0.11 16 29 H 0.38 -0.91 8.13 -74.06 -0.60 -1.51 16 30 H -0.31 -3.04 7.11 99.48 0.71 -2.33 16 31 H -0.29 -2.56 7.11 99.48 0.71 -1.85 16 32 H 0.42 -1.72 8.83 -92.71 -0.82 -2.54 16 33 H 0.12 -1.59 6.33 -2.39 -0.02 -1.60 16 34 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 36 H 0.16 -1.51 8.06 -2.91 -0.02 -1.53 16 37 H 0.18 -2.68 6.68 -2.91 -0.02 -2.69 16 38 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.12 -1.61 7.72 -2.38 -0.02 -1.63 16 Total: 0.00 -14.60 345.04 1.44 -13.17 By element: Atomic # 1 Polarization: -18.18 SS G_CDS: -0.25 Total: -18.43 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 4.19 Total: 7.61 kcal Atomic # 7 Polarization: -0.38 SS G_CDS: -3.48 Total: -3.86 kcal Atomic # 8 Polarization: -1.22 SS G_CDS: -1.51 Total: -2.74 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 1.51 Total: 0.47 kcal Atomic # 14 Polarization: 2.86 SS G_CDS: 2.20 Total: 5.06 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.23 Total: -1.28 kcal Total: -14.60 1.44 -13.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.208 kcal (2) G-P(sol) polarization free energy of solvation -14.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds