Wall clock time and date at job start Mon Mar 8 2021 05:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47490 * 239.99587 * 2 1 3 5 5 C 1.37982 * 120.32645 * 120.02322 * 4 2 1 6 6 N 1.32007 * 120.90207 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64629 * 359.72225 * 6 5 4 8 8 N 1.39140 * 119.71829 * 180.27154 * 7 6 5 9 9 C 1.46495 * 120.00119 * 0.26510 * 8 7 6 10 10 H 1.08994 * 112.85515 * 336.19785 * 9 8 7 11 11 C 1.53784 * 113.61423 * 107.50518 * 9 8 7 12 12 C 1.53785 * 87.08243 * 89.11658 * 11 9 8 13 13 H 1.09004 * 113.61219 * 270.88882 * 12 11 9 14 14 C 1.50691 * 113.69246 * 139.99268 * 12 11 9 15 15 C 1.38184 * 119.99029 * 322.46463 * 14 12 11 16 16 C 1.38234 * 120.05292 * 179.97438 * 15 14 12 17 17 C 1.38445 * 120.02618 * 0.02562 * 16 15 14 18 18 F 1.35095 * 120.01632 * 179.97438 * 17 16 15 19 19 C 1.38443 * 119.97364 * 0.02562 * 17 16 15 20 20 C 1.38397 * 119.94890 * 359.72256 * 19 17 16 21 21 F 1.35101 * 120.01371 * 180.27629 * 20 19 17 22 22 C 1.53780 * 87.08115 * 25.43207 * 12 11 9 23 23 C 1.39348 * 120.55873 * 0.53561 * 7 6 5 24 24 F 1.35104 * 120.46812 * 179.75154 * 23 7 6 25 25 C 1.38439 * 119.05915 * 359.48391 * 23 7 6 26 26 H 0.96701 * 114.00039 * 300.00047 * 1 2 3 27 27 H 1.09003 * 109.46936 * 119.99373 * 2 1 3 28 28 H 1.48502 * 109.99744 * 299.99303 * 3 2 1 29 29 H 1.48492 * 110.00288 * 61.31515 * 3 2 1 30 30 H 1.08006 * 119.54991 * 0.02562 * 5 4 2 31 31 H 0.97006 * 119.99496 * 180.26662 * 8 7 6 32 32 H 1.08992 * 113.61368 * 203.66197 * 11 9 8 33 33 H 1.09001 * 113.61242 * 334.57105 * 11 9 8 34 34 H 1.08000 * 119.97254 * 359.97438 * 15 14 12 35 35 H 1.08000 * 119.98607 * 180.02562 * 16 15 14 36 36 H 1.08000 * 120.02528 * 180.02562 * 19 17 16 37 37 H 1.08997 * 113.61617 * 220.02422 * 22 12 11 38 38 H 1.09000 * 113.61151 * 89.11506 * 22 12 11 39 39 H 1.07997 * 120.76130 * 180.26956 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7255 -0.0466 -2.1428 6 7 3.1723 -0.6580 -3.2241 7 6 2.8843 -1.9252 -3.4742 8 7 3.3813 -2.5317 -4.6236 9 6 4.2243 -1.7694 -5.5479 10 1 4.0643 -0.6936 -5.4776 11 6 5.7065 -2.1774 -5.5089 12 6 5.3678 -3.2166 -6.5908 13 1 5.0530 -4.1794 -6.1881 14 6 6.4236 -3.3456 -7.6582 15 6 7.0945 -2.2234 -8.1054 16 6 8.0636 -2.3403 -9.0841 17 6 8.3628 -3.5822 -9.6179 18 9 9.3096 -3.6962 -10.5748 19 6 7.6906 -4.7071 -9.1715 20 6 6.7241 -4.5895 -8.1878 21 9 6.0713 -5.6872 -7.7472 22 6 4.1966 -2.3033 -6.9899 23 6 2.0830 -2.6558 -2.5989 24 9 1.7860 -3.9479 -2.8586 25 6 1.6002 -2.0403 -1.4567 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5138 0.8901 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 2.9858 0.9872 -1.9696 31 1 3.1695 -3.4592 -4.8129 32 1 6.3838 -1.3953 -5.8517 33 1 6.0131 -2.6187 -4.5605 34 1 6.8614 -1.2541 -7.6899 35 1 8.5876 -1.4626 -9.4325 36 1 7.9236 -5.6764 -9.5870 37 1 3.2843 -2.8461 -7.2370 38 1 4.4612 -1.5556 -7.7375 39 1 0.9804 -2.5818 -0.7574 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13428182_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:54 Heat of formation + Delta-G solvation = -62.907267 kcal Electronic energy + Delta-G solvation = -27755.139852 eV Core-core repulsion = 23215.973109 eV Total energy + Delta-G solvation = -4539.166743 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.02825 -49.98638 -49.84251 -41.62657 -40.94132 -39.17261 -37.99700 -35.58508 -33.24465 -32.18484 -31.80917 -30.80230 -26.91256 -26.79634 -26.06850 -24.91155 -24.16724 -22.92526 -22.72187 -20.39400 -19.56377 -19.19461 -18.69604 -18.22652 -18.17233 -17.98158 -17.20261 -17.01369 -16.84624 -16.73956 -16.50518 -16.30885 -16.15293 -15.77380 -15.50409 -15.38187 -15.08848 -15.02485 -14.75111 -14.20193 -14.14064 -14.00342 -13.95002 -13.71149 -13.62913 -13.46445 -12.98911 -12.64045 -12.59572 -12.14419 -12.04693 -11.97562 -11.41558 -11.18990 -10.69941 -10.69359 -10.47233 -10.15368 -9.63204 -8.76019 -5.04321 -0.16018 -0.08745 -0.04421 0.14573 1.18882 1.52561 1.88951 1.90364 2.22369 2.52935 2.80238 3.06490 3.15060 3.23297 3.32485 3.40829 3.43190 3.55700 3.59070 3.61597 3.76883 3.83211 3.86240 3.97639 4.05444 4.12017 4.24848 4.48690 4.53208 4.57197 4.65309 4.70142 4.72439 4.75416 4.83832 4.85838 4.92781 4.98877 5.00207 5.00940 5.23243 5.43461 5.67349 5.96837 6.17083 6.36089 6.95739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.063 4.063 3 Si 0.679 3.321 4 C -0.161 4.161 5 C 0.150 3.850 6 N -0.509 5.509 7 C 0.392 3.608 8 N -0.700 5.700 9 C 0.135 3.865 10 H 0.112 0.888 11 C -0.143 4.143 12 C -0.077 4.077 13 H 0.102 0.898 14 C -0.114 4.114 15 C -0.060 4.060 16 C -0.159 4.159 17 C 0.127 3.873 18 F -0.130 7.130 19 C -0.190 4.190 20 C 0.133 3.867 21 F -0.129 7.129 22 C -0.138 4.138 23 C -0.019 4.019 24 F -0.133 7.133 25 C -0.037 4.037 26 H 0.381 0.619 27 H 0.079 0.921 28 H -0.251 1.251 29 H -0.258 1.258 30 H 0.164 0.836 31 H 0.413 0.587 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 3.079 2.414 4.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.174 4.174 3 Si 0.580 3.420 4 C -0.166 4.166 5 C -0.007 4.007 6 N -0.226 5.226 7 C 0.154 3.846 8 N -0.333 5.333 9 C 0.029 3.971 10 H 0.130 0.870 11 C -0.182 4.182 12 C -0.095 4.095 13 H 0.120 0.880 14 C -0.115 4.115 15 C -0.078 4.078 16 C -0.178 4.178 17 C 0.107 3.893 18 F -0.109 7.109 19 C -0.210 4.210 20 C 0.113 3.887 21 F -0.107 7.107 22 C -0.176 4.176 23 C -0.046 4.046 24 F -0.112 7.112 25 C -0.063 4.063 26 H 0.230 0.770 27 H 0.097 0.903 28 H -0.175 1.175 29 H -0.183 1.183 30 H 0.181 0.819 31 H 0.250 0.750 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.187 4.068 1.108 4.750 hybrid contribution -1.669 -1.698 0.839 2.524 sum 0.518 2.370 1.947 3.111 Atomic orbital electron populations 1.86588 1.17799 1.80175 1.49907 1.24570 0.84461 1.10821 0.97506 0.95213 0.91536 0.74408 0.80876 1.19832 1.03599 0.94250 0.98937 1.22271 0.91999 0.98996 0.87409 1.67299 1.26628 1.07254 1.21369 1.18370 0.90038 0.89072 0.87119 1.44216 1.53845 1.14373 1.20832 1.21790 0.89724 0.97461 0.88152 0.86971 1.23619 0.97294 0.98381 0.98883 1.21566 0.93956 0.99762 0.94209 0.87983 1.19815 1.00083 0.91658 0.99922 1.20771 0.93648 0.98559 0.94801 1.21254 1.00628 0.96744 0.99186 1.17334 0.89029 0.93811 0.89104 1.91557 1.61598 1.96816 1.60902 1.21082 0.99210 1.00209 1.00466 1.17161 0.93254 0.82896 0.95366 1.91532 1.79331 1.51830 1.88014 1.23487 0.98249 0.99230 0.96613 1.17970 1.06782 0.80970 0.98833 1.91496 1.92215 1.33541 1.93969 1.21255 0.95911 0.94376 0.94741 0.77037 0.90337 1.17505 1.18278 0.81923 0.74969 0.88444 0.90464 0.83636 0.83752 0.83334 0.90351 0.88053 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.10 12.75 -35.23 -0.45 -0.55 16 2 C -0.06 0.08 2.83 36.00 0.10 0.18 16 3 Si 0.68 -1.44 29.82 -169.99 -5.07 -6.51 16 4 C -0.16 -0.07 5.43 -104.47 -0.57 -0.64 16 5 C 0.15 0.05 9.84 -17.57 -0.17 -0.12 16 6 N -0.51 -0.80 9.13 -12.36 -0.11 -0.91 16 7 C 0.39 0.61 7.49 -154.86 -1.16 -0.55 16 8 N -0.70 0.14 5.41 -53.06 -0.29 -0.14 16 9 C 0.13 -0.20 4.36 -67.12 -0.29 -0.50 16 10 H 0.11 -0.10 7.40 -51.93 -0.38 -0.48 16 11 C -0.14 0.30 7.26 -25.91 -0.19 0.11 16 12 C -0.08 0.13 3.78 -90.96 -0.34 -0.22 16 13 H 0.10 -0.10 7.44 -51.93 -0.39 -0.48 16 14 C -0.11 0.08 5.30 -104.55 -0.55 -0.47 16 15 C -0.06 0.12 8.61 -39.60 -0.34 -0.22 16 16 C -0.16 0.17 10.02 -39.51 -0.40 -0.22 16 17 C 0.13 0.09 7.30 -39.43 -0.29 -0.20 16 18 F -0.13 -0.26 17.27 2.25 0.04 -0.22 16 19 C -0.19 -0.12 10.01 -39.45 -0.39 -0.52 16 20 C 0.13 0.11 7.24 -39.43 -0.29 -0.18 16 21 F -0.13 -0.25 16.36 2.25 0.04 -0.21 16 22 C -0.14 0.32 7.29 -25.92 -0.19 0.13 16 23 C -0.02 -0.04 7.35 -39.09 -0.29 -0.32 16 24 F -0.13 -0.33 16.65 2.25 0.04 -0.29 16 25 C -0.04 -0.04 9.75 -39.26 -0.38 -0.43 16 26 H 0.38 -1.43 8.74 45.56 0.40 -1.03 16 27 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 28 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 29 H -0.26 0.00 7.11 56.52 0.40 0.40 16 30 H 0.16 -0.33 4.88 -52.48 -0.26 -0.59 16 31 H 0.41 -0.39 8.17 -40.82 -0.33 -0.72 16 32 H 0.10 -0.32 6.32 -51.93 -0.33 -0.65 16 33 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.15 -0.63 6.66 -52.49 -0.35 -0.98 16 35 H 0.14 -0.41 8.06 -52.49 -0.42 -0.83 16 36 H 0.15 -0.05 8.06 -52.49 -0.42 -0.47 16 37 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 38 H 0.10 -0.33 7.72 -51.93 -0.40 -0.73 16 39 H 0.15 0.03 8.06 -52.49 -0.42 -0.40 16 LS Contribution 341.20 15.07 5.14 5.14 Total: 0.00 -6.19 341.20 -10.17 -16.36 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -3.77 Total: -8.50 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -5.74 Total: -4.17 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -0.40 Total: -1.05 kcal Atomic # 8 Polarization: -0.10 SS G_CDS: -0.45 Total: -0.55 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.11 Total: -0.72 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.07 Total: -6.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -6.19 -10.17 -16.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.546 kcal (2) G-P(sol) polarization free energy of solvation -6.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds