Wall clock time and date at job start Mon Mar 8 2021 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47490 * 239.99587 * 2 1 3 5 5 C 1.37982 * 120.32645 * 120.02322 * 4 2 1 6 6 N 1.32007 * 120.90207 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64629 * 359.72225 * 6 5 4 8 8 N 1.39140 * 119.71829 * 180.27154 * 7 6 5 9 9 C 1.46495 * 120.00119 * 0.26510 * 8 7 6 10 10 H 1.08994 * 112.85515 * 336.19785 * 9 8 7 11 11 C 1.53784 * 113.61423 * 107.50518 * 9 8 7 12 12 C 1.53785 * 87.08243 * 89.11658 * 11 9 8 13 13 H 1.09004 * 113.61219 * 270.88882 * 12 11 9 14 14 C 1.50691 * 113.69246 * 139.99268 * 12 11 9 15 15 C 1.38184 * 119.99029 * 322.46463 * 14 12 11 16 16 C 1.38234 * 120.05292 * 179.97438 * 15 14 12 17 17 C 1.38445 * 120.02618 * 0.02562 * 16 15 14 18 18 F 1.35095 * 120.01632 * 179.97438 * 17 16 15 19 19 C 1.38443 * 119.97364 * 0.02562 * 17 16 15 20 20 C 1.38397 * 119.94890 * 359.72256 * 19 17 16 21 21 F 1.35101 * 120.01371 * 180.27629 * 20 19 17 22 22 C 1.53780 * 87.08115 * 25.43207 * 12 11 9 23 23 C 1.39348 * 120.55873 * 0.53561 * 7 6 5 24 24 F 1.35104 * 120.46812 * 179.75154 * 23 7 6 25 25 C 1.38439 * 119.05915 * 359.48391 * 23 7 6 26 26 H 0.96701 * 114.00039 * 300.00047 * 1 2 3 27 27 H 1.09003 * 109.46936 * 119.99373 * 2 1 3 28 28 H 1.48502 * 109.99744 * 299.99303 * 3 2 1 29 29 H 1.48492 * 110.00288 * 61.31515 * 3 2 1 30 30 H 1.08006 * 119.54991 * 0.02562 * 5 4 2 31 31 H 0.97006 * 119.99496 * 180.26662 * 8 7 6 32 32 H 1.08992 * 113.61368 * 203.66197 * 11 9 8 33 33 H 1.09001 * 113.61242 * 334.57105 * 11 9 8 34 34 H 1.08000 * 119.97254 * 359.97438 * 15 14 12 35 35 H 1.08000 * 119.98607 * 180.02562 * 16 15 14 36 36 H 1.08000 * 120.02528 * 180.02562 * 19 17 16 37 37 H 1.08997 * 113.61617 * 220.02422 * 22 12 11 38 38 H 1.09000 * 113.61151 * 89.11506 * 22 12 11 39 39 H 1.07997 * 120.76130 * 180.26956 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7255 -0.0466 -2.1428 6 7 3.1723 -0.6580 -3.2241 7 6 2.8843 -1.9252 -3.4742 8 7 3.3813 -2.5317 -4.6236 9 6 4.2243 -1.7694 -5.5479 10 1 4.0643 -0.6936 -5.4776 11 6 5.7065 -2.1774 -5.5089 12 6 5.3678 -3.2166 -6.5908 13 1 5.0530 -4.1794 -6.1881 14 6 6.4236 -3.3456 -7.6582 15 6 7.0945 -2.2234 -8.1054 16 6 8.0636 -2.3403 -9.0841 17 6 8.3628 -3.5822 -9.6179 18 9 9.3096 -3.6962 -10.5748 19 6 7.6906 -4.7071 -9.1715 20 6 6.7241 -4.5895 -8.1878 21 9 6.0713 -5.6872 -7.7472 22 6 4.1966 -2.3033 -6.9899 23 6 2.0830 -2.6558 -2.5989 24 9 1.7860 -3.9479 -2.8586 25 6 1.6002 -2.0403 -1.4567 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5138 0.8901 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 2.9858 0.9872 -1.9696 31 1 3.1695 -3.4592 -4.8129 32 1 6.3838 -1.3953 -5.8517 33 1 6.0131 -2.6187 -4.5605 34 1 6.8614 -1.2541 -7.6899 35 1 8.5876 -1.4626 -9.4325 36 1 7.9236 -5.6764 -9.5870 37 1 3.2843 -2.8461 -7.2370 38 1 4.4612 -1.5556 -7.7375 39 1 0.9804 -2.5818 -0.7574 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13428182_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:10:53 Heat of formation + Delta-G solvation = -56.993121 kcal Electronic energy + Delta-G solvation = -27754.883395 eV Core-core repulsion = 23215.973109 eV Total energy + Delta-G solvation = -4538.910286 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.103 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.09527 -50.04624 -49.96688 -41.59463 -40.89013 -39.10515 -37.93503 -35.55702 -33.27099 -32.15200 -31.75357 -30.77444 -26.82417 -26.67027 -26.01022 -24.90726 -24.13323 -22.91430 -22.68818 -20.30522 -19.55625 -19.20697 -18.63897 -18.22628 -18.16393 -18.03600 -17.12261 -17.06408 -16.92579 -16.76018 -16.44034 -16.38474 -16.12673 -15.73653 -15.51455 -15.34033 -15.06247 -14.99158 -14.73762 -14.19966 -14.12558 -13.96239 -13.90568 -13.67788 -13.48283 -13.41937 -12.94066 -12.58017 -12.54107 -12.09647 -11.98139 -11.89749 -11.30304 -11.13275 -10.73843 -10.69820 -10.41012 -10.10502 -9.60171 -8.76049 -4.88109 -0.12755 -0.08654 -0.03506 0.10553 1.32626 1.65378 1.94046 2.00506 2.28477 2.50774 2.82080 3.02153 3.21528 3.32080 3.39591 3.48123 3.50425 3.65809 3.68201 3.70755 3.86812 3.88832 3.96162 4.06519 4.09829 4.20009 4.38874 4.47832 4.65278 4.70058 4.73523 4.76853 4.85347 4.86025 4.91641 4.94980 5.00310 5.04480 5.10043 5.13663 5.31275 5.46908 5.72738 6.01643 6.17528 6.62133 6.93789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.073 4.073 3 Si 0.764 3.236 4 C -0.168 4.168 5 C 0.148 3.852 6 N -0.519 5.519 7 C 0.385 3.615 8 N -0.699 5.699 9 C 0.132 3.868 10 H 0.111 0.889 11 C -0.134 4.134 12 C -0.076 4.076 13 H 0.090 0.910 14 C -0.111 4.111 15 C -0.053 4.053 16 C -0.152 4.152 17 C 0.107 3.893 18 F -0.142 7.142 19 C -0.199 4.199 20 C 0.111 3.889 21 F -0.141 7.141 22 C -0.129 4.129 23 C -0.040 4.040 24 F -0.141 7.141 25 C -0.042 4.042 26 H 0.397 0.603 27 H 0.100 0.900 28 H -0.292 1.292 29 H -0.285 1.285 30 H 0.184 0.816 31 H 0.414 0.586 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.149 0.851 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 4.652 2.852 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.182 4.182 3 Si 0.668 3.332 4 C -0.173 4.173 5 C -0.009 4.009 6 N -0.236 5.236 7 C 0.146 3.854 8 N -0.331 5.331 9 C 0.027 3.973 10 H 0.128 0.872 11 C -0.173 4.173 12 C -0.095 4.095 13 H 0.109 0.891 14 C -0.112 4.112 15 C -0.070 4.070 16 C -0.171 4.171 17 C 0.087 3.913 18 F -0.121 7.121 19 C -0.219 4.219 20 C 0.091 3.909 21 F -0.120 7.120 22 C -0.167 4.167 23 C -0.066 4.066 24 F -0.121 7.121 25 C -0.068 4.068 26 H 0.247 0.753 27 H 0.117 0.883 28 H -0.219 1.219 29 H -0.211 1.211 30 H 0.200 0.800 31 H 0.252 0.748 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.569 5.613 1.551 6.365 hybrid contribution -1.828 -2.153 0.723 2.915 sum 0.741 3.461 2.274 4.207 Atomic orbital electron populations 1.86542 1.18588 1.80745 1.51200 1.24811 0.84013 1.11808 0.97550 0.94266 0.90120 0.71770 0.77021 1.20050 1.03549 0.94051 0.99623 1.22654 0.91515 0.99778 0.86968 1.67347 1.27112 1.07215 1.21952 1.18510 0.90094 0.89237 0.87530 1.44322 1.53710 1.14528 1.20565 1.21859 0.89919 0.97187 0.88340 0.87151 1.23609 0.97124 0.98430 0.98097 1.21531 0.94129 0.99600 0.94228 0.89141 1.19995 1.00068 0.91432 0.99693 1.21097 0.92613 0.99297 0.94041 1.21544 1.00362 0.96588 0.98613 1.17566 0.89421 0.94650 0.89622 1.91523 1.62128 1.96931 1.61482 1.21155 0.99474 1.00563 1.00714 1.17391 0.93962 0.83271 0.96248 1.91496 1.79655 1.52558 1.88249 1.23481 0.97642 0.99144 0.96398 1.18147 1.07882 0.80896 0.99659 1.91466 1.92401 1.34082 1.94103 1.21429 0.95869 0.94893 0.94649 0.75265 0.88258 1.21944 1.21141 0.79951 0.74841 0.86516 0.91634 0.80603 0.81715 0.83352 0.90845 0.86434 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.00 12.75 -148.98 -1.90 -1.90 16 2 C -0.07 0.23 2.83 71.24 0.20 0.43 16 3 Si 0.76 -3.80 29.82 68.60 2.05 -1.75 16 4 C -0.17 -0.13 5.43 -19.77 -0.11 -0.24 16 5 C 0.15 0.06 9.84 84.61 0.83 0.89 16 6 N -0.52 -1.61 9.13 -193.03 -1.76 -3.37 16 7 C 0.38 1.42 7.49 133.09 1.00 2.42 16 8 N -0.70 -0.08 5.41 -321.78 -1.74 -1.83 16 9 C 0.13 -0.46 4.36 45.52 0.20 -0.26 16 10 H 0.11 -0.29 7.40 -2.39 -0.02 -0.31 16 11 C -0.13 0.68 7.26 31.12 0.23 0.90 16 12 C -0.08 0.27 3.78 -11.01 -0.04 0.22 16 13 H 0.09 -0.09 7.44 -2.38 -0.02 -0.10 16 14 C -0.11 0.20 5.30 -19.82 -0.10 0.09 16 15 C -0.05 0.30 8.61 22.26 0.19 0.49 16 16 C -0.15 0.51 10.02 22.32 0.22 0.74 16 17 C 0.11 0.18 7.30 22.37 0.16 0.35 16 18 F -0.14 -0.66 17.27 44.97 0.78 0.11 16 19 C -0.20 -0.50 10.01 22.36 0.22 -0.27 16 20 C 0.11 0.29 7.24 22.37 0.16 0.45 16 21 F -0.14 -0.77 16.36 44.97 0.74 -0.04 16 22 C -0.13 0.70 7.29 31.12 0.23 0.92 16 23 C -0.04 -0.19 7.35 22.58 0.17 -0.03 16 24 F -0.14 -0.89 16.65 44.97 0.75 -0.14 16 25 C -0.04 -0.12 9.75 22.48 0.22 0.09 16 26 H 0.40 -3.15 8.74 -74.06 -0.65 -3.80 16 27 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 28 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 29 H -0.28 0.15 7.11 99.48 0.71 0.86 16 30 H 0.18 -0.89 4.88 -2.91 -0.01 -0.90 16 31 H 0.41 -0.33 8.17 -92.70 -0.76 -1.09 16 32 H 0.12 -1.05 6.32 -2.39 -0.02 -1.06 16 33 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.18 -2.10 6.66 -2.91 -0.02 -2.12 16 35 H 0.17 -1.27 8.06 -2.91 -0.02 -1.29 16 36 H 0.15 0.19 8.06 -2.91 -0.02 0.16 16 37 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.12 -0.99 7.72 -2.39 -0.02 -1.01 16 39 H 0.15 0.15 8.06 -2.91 -0.02 0.13 16 Total: 0.00 -15.80 341.20 2.46 -13.34 By element: Atomic # 1 Polarization: -11.40 SS G_CDS: -0.22 Total: -11.62 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 3.78 Total: 7.19 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -3.50 Total: -5.20 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -1.90 Total: -1.90 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 2.26 Total: -0.06 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.05 Total: -1.75 kcal Total: -15.80 2.46 -13.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13428182_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.650 kcal (2) G-P(sol) polarization free energy of solvation -15.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds