Wall clock time and date at job start Mon Mar 8 2021 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38607 * 120.72139 * 244.72325 * 4 2 1 6 6 N 1.32278 * 119.19775 * 179.78712 * 5 4 2 7 7 C 1.32493 * 120.74091 * 0.47788 * 6 5 4 8 8 N 1.38404 * 119.21549 * 179.75083 * 7 6 5 9 9 C 1.46500 * 120.00461 * 0.02562 * 8 7 6 10 10 H 1.09005 * 109.46281 * 34.99833 * 9 8 7 11 11 C 1.52998 * 109.47172 * 154.99839 * 9 8 7 12 12 C 1.53003 * 109.46757 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47220 * 300.00073 * 12 11 9 14 14 H 1.08997 * 109.46934 * 300.00237 * 13 12 11 15 15 C 1.50702 * 109.47309 * 180.02562 * 13 12 11 16 16 N 1.30638 * 119.25308 * 334.73029 * 15 13 12 17 17 C 1.33516 * 121.50461 * 179.76076 * 16 15 13 18 18 C 1.36194 * 119.91175 * 0.50354 * 17 16 15 19 19 C 1.41023 * 118.59036 * 359.75967 * 18 17 16 20 20 O 1.21988 * 120.70681 * 180.02562 * 19 18 17 21 21 N 1.34741 * 119.25473 * 154.99482 * 15 13 12 22 22 C 1.52998 * 109.47315 * 60.00269 * 13 12 11 23 23 C 1.52995 * 109.47264 * 275.00193 * 9 8 7 24 24 N 1.32491 * 121.56255 * 359.77541 * 7 6 5 25 25 C 1.32270 * 120.74252 * 359.97422 * 24 7 6 26 26 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 27 27 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 28 28 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 29 29 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 30 30 H 1.08006 * 120.40271 * 359.97438 * 5 4 2 31 31 H 0.97003 * 119.99716 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.47206 * 300.00281 * 11 9 8 33 33 H 1.08997 * 109.47146 * 60.00225 * 11 9 8 34 34 H 1.09001 * 109.46994 * 60.00396 * 12 11 9 35 35 H 1.09001 * 109.46755 * 179.97438 * 12 11 9 36 36 H 1.08007 * 120.04130 * 180.26467 * 17 16 15 37 37 H 1.07999 * 120.70615 * 179.72988 * 18 17 16 38 38 H 0.96998 * 120.04427 * 359.96059 * 21 15 13 39 39 H 1.08997 * 109.47146 * 60.00098 * 22 13 12 40 40 H 1.08998 * 109.47206 * 180.02562 * 22 13 12 41 41 H 1.08997 * 109.46934 * 299.99701 * 23 9 8 42 42 H 1.09000 * 109.47102 * 59.99483 * 23 9 8 43 43 H 1.07999 * 120.40058 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6469 -0.0261 2.2006 6 7 3.0698 -0.6785 3.2708 7 6 2.8242 -1.9723 3.4162 8 7 3.2860 -2.6247 4.5462 9 6 4.0359 -1.8849 5.5642 10 1 3.6428 -0.8710 5.6397 11 6 3.8933 -2.5891 6.9150 12 6 4.6760 -1.8160 7.9783 13 6 6.1536 -1.7617 7.5849 14 1 6.5470 -2.7754 7.5095 15 6 6.9247 -1.0007 8.6326 16 7 6.3023 -0.1189 9.3685 17 6 6.9402 0.5771 10.3126 18 6 8.2723 0.3811 10.5174 19 6 8.9455 -0.5670 9.7195 20 8 10.1382 -0.7738 9.8705 21 7 8.2416 -1.2415 8.7853 22 6 6.2962 -1.0574 6.2342 23 6 5.5134 -1.8310 5.1706 24 7 2.1477 -2.6564 2.5054 25 6 1.6926 -2.0632 1.4143 26 1 -0.3934 0.4417 0.7649 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7703 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 2.8542 1.0276 2.0854 31 1 3.1130 -3.5719 4.6640 32 1 2.8407 -2.6275 7.1954 33 1 4.2863 -3.6030 6.8394 34 1 4.2825 -0.8023 8.0537 35 1 4.5740 -2.3175 8.9407 36 1 6.4014 1.2974 10.9104 37 1 8.8020 0.9401 11.2746 38 1 8.6833 -1.8986 8.2251 39 1 5.9028 -0.0437 6.3096 40 1 7.3488 -1.0191 5.9538 41 1 5.9064 -2.8448 5.0951 42 1 5.6150 -1.3293 4.2083 43 1 1.1413 -2.6261 0.6756 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13455922_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:18 Heat of formation + Delta-G solvation = 29.757471 kcal Electronic energy + Delta-G solvation = -27446.055874 eV Core-core repulsion = 23493.234140 eV Total energy + Delta-G solvation = -3952.821734 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.87588 -42.12438 -40.23194 -38.67491 -38.03716 -36.42160 -35.40205 -34.71659 -33.22288 -32.16634 -31.82515 -30.02092 -26.81419 -26.01685 -25.60649 -25.11601 -23.91066 -23.32063 -22.47224 -21.16987 -19.77630 -19.40572 -19.04764 -18.74162 -18.10250 -17.80990 -17.03496 -16.74075 -16.61738 -16.18724 -15.89390 -15.80168 -15.67237 -15.57735 -15.36097 -15.27834 -14.64486 -14.42401 -14.22674 -14.07804 -14.02410 -13.62874 -13.40788 -13.22851 -12.65687 -12.49516 -12.37763 -12.23802 -12.06697 -12.00370 -11.86012 -11.77659 -11.53079 -11.23288 -11.18781 -11.11292 -10.59858 -10.03508 -9.57619 -9.14327 -5.13616 -0.48254 0.04803 0.14126 0.77366 1.20026 1.53772 1.54408 1.75113 1.90448 2.53618 2.65417 2.80898 3.10808 3.23306 3.38744 3.40877 3.50175 3.57563 3.60340 3.68770 3.73751 3.77309 3.95652 3.99396 4.11836 4.15616 4.18116 4.22365 4.26844 4.43431 4.47576 4.50525 4.57782 4.73270 4.76604 4.82827 4.85519 4.91690 4.96572 5.10220 5.14667 5.28431 5.40361 5.42067 5.75630 5.98525 6.37756 6.49378 6.68224 6.78601 7.27387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.046 4.046 3 Si 0.680 3.320 4 C -0.295 4.295 5 C 0.200 3.800 6 N -0.560 5.560 7 C 0.568 3.432 8 N -0.693 5.693 9 C 0.159 3.841 10 H 0.098 0.902 11 C -0.130 4.130 12 C -0.094 4.094 13 C -0.047 4.047 14 H 0.101 0.899 15 C 0.404 3.596 16 N -0.532 5.532 17 C 0.156 3.844 18 C -0.293 4.293 19 C 0.519 3.481 20 O -0.537 6.537 21 N -0.627 5.627 22 C -0.107 4.107 23 C -0.127 4.127 24 N -0.570 5.570 25 C 0.223 3.777 26 H 0.379 0.621 27 H 0.115 0.885 28 H -0.255 1.255 29 H -0.251 1.251 30 H 0.166 0.834 31 H 0.414 0.586 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.171 0.829 37 H 0.157 0.843 38 H 0.417 0.583 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 0.599 0.119 4.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.158 4.158 3 Si 0.581 3.419 4 C -0.303 4.303 5 C 0.032 3.968 6 N -0.283 5.283 7 C 0.212 3.788 8 N -0.328 5.328 9 C 0.054 3.946 10 H 0.116 0.884 11 C -0.168 4.168 12 C -0.132 4.132 13 C -0.067 4.067 14 H 0.119 0.881 15 C 0.138 3.862 16 N -0.256 5.256 17 C 0.018 3.982 18 C -0.318 4.318 19 C 0.318 3.682 20 O -0.415 6.415 21 N -0.265 5.265 22 C -0.146 4.146 23 C -0.166 4.166 24 N -0.291 5.291 25 C 0.055 3.945 26 H 0.226 0.774 27 H 0.132 0.868 28 H -0.180 1.180 29 H -0.175 1.175 30 H 0.183 0.817 31 H 0.251 0.749 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.188 0.812 37 H 0.175 0.825 38 H 0.256 0.744 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.293 0.767 0.403 3.405 hybrid contribution 0.871 -0.935 -0.928 1.579 sum -2.421 -0.167 -0.526 2.484 Atomic orbital electron populations 1.86514 1.17127 1.81633 1.49286 1.24695 0.85120 1.09591 0.96422 0.95016 0.81063 0.77786 0.87995 1.21707 1.09029 0.97869 1.01684 1.22767 0.88166 0.99161 0.86701 1.67916 1.27088 1.08275 1.24981 1.19395 0.86937 0.85510 0.86972 1.44270 1.58355 1.12127 1.18054 1.21045 0.90769 0.97139 0.85665 0.88429 1.21868 1.01759 0.99670 0.93480 1.21354 0.90888 1.02903 0.98076 1.20565 0.96582 0.98230 0.91343 0.88144 1.23200 0.80782 0.89980 0.92197 1.68293 1.36644 1.10475 1.10177 1.22761 0.91721 0.93062 0.90649 1.22973 0.96732 1.05202 1.06867 1.17365 0.87601 0.82565 0.80680 1.91032 1.14094 1.67235 1.69147 1.44773 1.10278 1.37542 1.33956 1.21562 1.01099 1.00338 0.91616 1.21941 0.94720 1.00908 0.98997 1.67988 1.16655 1.40013 1.04464 1.22831 0.89141 0.90960 0.91561 0.77357 0.86754 1.18008 1.17541 0.81731 0.74856 0.90293 0.91092 0.89123 0.90580 0.81223 0.82531 0.74377 0.90018 0.91188 0.91458 0.90627 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.64 12.85 -35.23 -0.45 0.18 16 2 C -0.05 0.08 2.83 36.01 0.10 0.18 16 3 Si 0.68 -1.61 29.88 -169.99 -5.08 -6.69 16 4 C -0.29 0.25 5.36 -104.35 -0.56 -0.31 16 5 C 0.20 -0.15 9.92 -17.22 -0.17 -0.32 16 6 N -0.56 -0.46 9.20 -13.93 -0.13 -0.59 16 7 C 0.57 0.64 8.40 -322.81 -2.71 -2.07 16 8 N -0.69 0.87 5.22 -55.80 -0.29 0.58 16 9 C 0.16 -0.45 2.45 -67.93 -0.17 -0.61 16 10 H 0.10 -0.15 7.50 -51.93 -0.39 -0.54 16 11 C -0.13 0.56 5.39 -26.73 -0.14 0.42 16 12 C -0.09 0.38 4.67 -26.73 -0.12 0.25 16 13 C -0.05 0.20 2.48 -91.77 -0.23 -0.03 16 14 H 0.10 -0.58 8.14 -51.93 -0.42 -1.00 16 15 C 0.40 -0.75 6.73 -155.57 -1.05 -1.79 16 16 N -0.53 0.39 9.12 -10.64 -0.10 0.29 16 17 C 0.16 -0.14 11.20 -17.55 -0.20 -0.33 16 18 C -0.29 -0.26 10.07 -39.26 -0.40 -0.66 16 19 C 0.52 1.49 7.75 -15.09 -0.12 1.37 16 20 O -0.54 -3.84 17.97 4.93 0.09 -3.75 16 21 N -0.63 0.52 5.25 -12.27 -0.06 0.45 16 22 C -0.11 0.41 5.19 -26.71 -0.14 0.27 16 23 C -0.13 0.39 5.51 -26.71 -0.15 0.25 16 24 N -0.57 -1.02 10.46 -13.93 -0.15 -1.16 16 25 C 0.22 0.07 10.99 -17.23 -0.19 -0.12 16 26 H 0.38 -1.82 8.70 45.56 0.40 -1.42 16 27 H 0.12 -0.17 7.96 -51.93 -0.41 -0.59 16 28 H -0.26 0.00 7.11 56.52 0.40 0.41 16 29 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 30 H 0.17 -0.54 5.07 -52.48 -0.27 -0.80 16 31 H 0.41 -0.92 8.72 -40.82 -0.36 -1.27 16 32 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 33 H 0.07 -0.35 8.14 -51.93 -0.42 -0.78 16 34 H 0.09 -0.27 7.76 -51.93 -0.40 -0.68 16 35 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 36 H 0.17 -0.62 8.06 -52.48 -0.42 -1.04 16 37 H 0.16 0.00 8.06 -52.49 -0.42 -0.42 16 38 H 0.42 -1.23 8.78 -40.82 -0.36 -1.59 16 39 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 40 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 42 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 43 H 0.17 -0.22 8.06 -52.49 -0.42 -0.64 16 LS Contribution 356.90 15.07 5.38 5.38 Total: 0.00 -10.33 356.90 -12.66 -22.99 By element: Atomic # 1 Polarization: -8.55 SS G_CDS: -5.64 Total: -14.19 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -6.23 Total: -3.50 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.73 Total: -0.42 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.36 Total: -3.56 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.08 Total: -6.69 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -10.33 -12.66 -22.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13455922_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.748 kcal (2) G-P(sol) polarization free energy of solvation -10.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds