Wall clock time and date at job start Mon Mar 8 2021 06:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38607 * 120.72139 * 244.72325 * 4 2 1 6 6 N 1.32278 * 119.19775 * 179.78712 * 5 4 2 7 7 C 1.32493 * 120.74091 * 0.47788 * 6 5 4 8 8 N 1.38404 * 119.21549 * 179.75083 * 7 6 5 9 9 C 1.46500 * 120.00461 * 0.02562 * 8 7 6 10 10 H 1.09005 * 109.46281 * 34.99833 * 9 8 7 11 11 C 1.52998 * 109.47172 * 154.99839 * 9 8 7 12 12 C 1.53003 * 109.46757 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47220 * 300.00073 * 12 11 9 14 14 H 1.08997 * 109.46934 * 300.00237 * 13 12 11 15 15 C 1.50702 * 109.47309 * 180.02562 * 13 12 11 16 16 N 1.30638 * 119.25308 * 334.73029 * 15 13 12 17 17 C 1.33516 * 121.50461 * 179.76076 * 16 15 13 18 18 C 1.36194 * 119.91175 * 0.50354 * 17 16 15 19 19 C 1.41023 * 118.59036 * 359.75967 * 18 17 16 20 20 O 1.21988 * 120.70681 * 180.02562 * 19 18 17 21 21 N 1.34741 * 119.25473 * 154.99482 * 15 13 12 22 22 C 1.52998 * 109.47315 * 60.00269 * 13 12 11 23 23 C 1.52995 * 109.47264 * 275.00193 * 9 8 7 24 24 N 1.32491 * 121.56255 * 359.77541 * 7 6 5 25 25 C 1.32270 * 120.74252 * 359.97422 * 24 7 6 26 26 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 27 27 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 28 28 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 29 29 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 30 30 H 1.08006 * 120.40271 * 359.97438 * 5 4 2 31 31 H 0.97003 * 119.99716 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.47206 * 300.00281 * 11 9 8 33 33 H 1.08997 * 109.47146 * 60.00225 * 11 9 8 34 34 H 1.09001 * 109.46994 * 60.00396 * 12 11 9 35 35 H 1.09001 * 109.46755 * 179.97438 * 12 11 9 36 36 H 1.08007 * 120.04130 * 180.26467 * 17 16 15 37 37 H 1.07999 * 120.70615 * 179.72988 * 18 17 16 38 38 H 0.96998 * 120.04427 * 359.96059 * 21 15 13 39 39 H 1.08997 * 109.47146 * 60.00098 * 22 13 12 40 40 H 1.08998 * 109.47206 * 180.02562 * 22 13 12 41 41 H 1.08997 * 109.46934 * 299.99701 * 23 9 8 42 42 H 1.09000 * 109.47102 * 59.99483 * 23 9 8 43 43 H 1.07999 * 120.40058 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6469 -0.0261 2.2006 6 7 3.0698 -0.6785 3.2708 7 6 2.8242 -1.9723 3.4162 8 7 3.2860 -2.6247 4.5462 9 6 4.0359 -1.8849 5.5642 10 1 3.6428 -0.8710 5.6397 11 6 3.8933 -2.5891 6.9150 12 6 4.6760 -1.8160 7.9783 13 6 6.1536 -1.7617 7.5849 14 1 6.5470 -2.7754 7.5095 15 6 6.9247 -1.0007 8.6326 16 7 6.3023 -0.1189 9.3685 17 6 6.9402 0.5771 10.3126 18 6 8.2723 0.3811 10.5174 19 6 8.9455 -0.5670 9.7195 20 8 10.1382 -0.7738 9.8705 21 7 8.2416 -1.2415 8.7853 22 6 6.2962 -1.0574 6.2342 23 6 5.5134 -1.8310 5.1706 24 7 2.1477 -2.6564 2.5054 25 6 1.6926 -2.0632 1.4143 26 1 -0.3934 0.4417 0.7649 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7703 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 2.8542 1.0276 2.0854 31 1 3.1130 -3.5719 4.6640 32 1 2.8407 -2.6275 7.1954 33 1 4.2863 -3.6030 6.8394 34 1 4.2825 -0.8023 8.0537 35 1 4.5740 -2.3175 8.9407 36 1 6.4014 1.2974 10.9104 37 1 8.8020 0.9401 11.2746 38 1 8.6833 -1.8986 8.2251 39 1 5.9028 -0.0437 6.3096 40 1 7.3488 -1.0191 5.9538 41 1 5.9064 -2.8448 5.0951 42 1 5.6150 -1.3293 4.2083 43 1 1.1413 -2.6261 0.6756 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13455922_12175864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:17 Heat of formation + Delta-G solvation = 28.916240 kcal Electronic energy + Delta-G solvation = -27446.092353 eV Core-core repulsion = 23493.234140 eV Total energy + Delta-G solvation = -3952.858213 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.88121 -42.07994 -40.08805 -38.76784 -37.93931 -36.30514 -35.39019 -34.69979 -33.15682 -32.01215 -31.67306 -29.89829 -26.72423 -25.95618 -25.58817 -25.06924 -23.66479 -23.24260 -22.34236 -20.94038 -19.75792 -19.35337 -19.03420 -18.66754 -17.99517 -17.77819 -17.06325 -16.62718 -16.55041 -16.09193 -15.81852 -15.70172 -15.61257 -15.53847 -15.17051 -15.12002 -14.57127 -14.40263 -14.09915 -14.03456 -13.96874 -13.45101 -13.16421 -13.14886 -12.44850 -12.32875 -12.23556 -12.11680 -12.01465 -11.87472 -11.77432 -11.72030 -11.43236 -11.28184 -11.08395 -10.99789 -10.50450 -10.00957 -9.64970 -9.05537 -4.98487 -0.43522 0.09191 0.16596 0.69568 1.33715 1.57144 1.65277 1.86891 2.00450 2.52145 2.79080 2.83391 3.19872 3.42743 3.56353 3.59292 3.67709 3.70017 3.74924 3.75733 3.84415 4.02229 4.18883 4.21828 4.26460 4.32595 4.40423 4.43189 4.52664 4.54796 4.58123 4.68163 4.83785 4.84687 4.90589 5.02140 5.10670 5.18259 5.22980 5.31535 5.36334 5.37272 5.48266 5.54459 5.83124 6.09798 6.45824 6.67928 6.72691 6.80682 7.31887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.047 4.047 3 Si 0.767 3.233 4 C -0.289 4.289 5 C 0.195 3.805 6 N -0.573 5.573 7 C 0.554 3.446 8 N -0.687 5.687 9 C 0.161 3.839 10 H 0.084 0.916 11 C -0.120 4.120 12 C -0.089 4.089 13 C -0.041 4.041 14 H 0.125 0.875 15 C 0.410 3.590 16 N -0.542 5.542 17 C 0.174 3.826 18 C -0.319 4.319 19 C 0.508 3.492 20 O -0.595 6.595 21 N -0.616 5.616 22 C -0.101 4.101 23 C -0.119 4.119 24 N -0.592 5.592 25 C 0.211 3.789 26 H 0.395 0.605 27 H 0.112 0.888 28 H -0.284 1.284 29 H -0.298 1.298 30 H 0.187 0.813 31 H 0.418 0.582 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.199 0.801 37 H 0.158 0.842 38 H 0.428 0.572 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 0.379 0.308 5.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.158 4.158 3 Si 0.673 3.327 4 C -0.298 4.298 5 C 0.028 3.972 6 N -0.295 5.295 7 C 0.197 3.803 8 N -0.323 5.323 9 C 0.056 3.944 10 H 0.102 0.898 11 C -0.158 4.158 12 C -0.127 4.127 13 C -0.061 4.061 14 H 0.143 0.857 15 C 0.146 3.854 16 N -0.265 5.265 17 C 0.035 3.965 18 C -0.344 4.344 19 C 0.309 3.691 20 O -0.478 6.478 21 N -0.253 5.253 22 C -0.140 4.140 23 C -0.158 4.158 24 N -0.314 5.314 25 C 0.044 3.956 26 H 0.245 0.755 27 H 0.129 0.871 28 H -0.211 1.211 29 H -0.226 1.226 30 H 0.204 0.796 31 H 0.256 0.744 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.216 0.784 37 H 0.176 0.824 38 H 0.268 0.732 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -4.347 0.513 0.594 4.417 hybrid contribution 1.067 -0.846 -1.077 1.736 sum -3.280 -0.333 -0.482 3.332 Atomic orbital electron populations 1.86481 1.17242 1.82071 1.50474 1.24781 0.85110 1.10032 0.95915 0.93994 0.77874 0.75241 0.85566 1.21737 1.08734 0.97477 1.01828 1.23163 0.87669 1.00114 0.86301 1.67970 1.27585 1.08308 1.25654 1.19673 0.87241 0.85860 0.87536 1.44374 1.57986 1.12353 1.17611 1.21074 0.90612 0.96585 0.86091 0.89809 1.21789 1.01788 1.00069 0.92161 1.21298 0.90682 1.02478 0.98257 1.20668 0.96338 0.99007 0.90103 0.85690 1.23696 0.80241 0.89432 0.92043 1.68391 1.36810 1.10807 1.10462 1.23190 0.91014 0.92407 0.89894 1.22996 0.97627 1.06009 1.07752 1.17684 0.87120 0.83001 0.81278 1.90990 1.16316 1.69315 1.71143 1.44645 1.10567 1.37005 1.33083 1.21486 1.01193 0.99781 0.91510 1.21842 0.94609 1.01183 0.98144 1.68000 1.17551 1.40667 1.05179 1.23098 0.89272 0.91686 0.91561 0.75545 0.87051 1.21080 1.22560 0.79628 0.74404 0.90386 0.89686 0.90057 0.90277 0.78390 0.82421 0.73185 0.90908 0.90720 0.90564 0.92585 0.80422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.55 12.85 -148.98 -1.91 -0.37 16 2 C -0.05 0.17 2.83 71.24 0.20 0.37 16 3 Si 0.77 -3.74 29.88 68.60 2.05 -1.69 16 4 C -0.29 0.51 5.36 -19.69 -0.11 0.41 16 5 C 0.19 -0.32 9.92 84.71 0.84 0.52 16 6 N -0.57 -1.06 9.20 -197.98 -1.82 -2.88 16 7 C 0.55 1.42 8.40 261.49 2.20 3.62 16 8 N -0.69 1.79 5.22 -330.44 -1.73 0.06 16 9 C 0.16 -0.98 2.45 44.99 0.11 -0.87 16 10 H 0.08 -0.24 7.50 -2.38 -0.02 -0.26 16 11 C -0.12 1.19 5.39 30.59 0.16 1.36 16 12 C -0.09 0.84 4.67 30.59 0.14 0.98 16 13 C -0.04 0.40 2.48 -11.54 -0.03 0.38 16 14 H 0.13 -1.76 8.14 -2.39 -0.02 -1.78 16 15 C 0.41 -1.87 6.73 138.18 0.93 -0.94 16 16 N -0.54 1.33 9.12 -187.56 -1.71 -0.38 16 17 C 0.17 -0.44 11.20 83.96 0.94 0.50 16 18 C -0.32 -0.78 10.07 22.48 0.23 -0.56 16 19 C 0.51 3.51 7.75 84.89 0.66 4.17 16 20 O -0.59 -9.83 17.97 -5.28 -0.09 -9.92 16 21 N -0.62 1.03 5.25 -310.69 -1.63 -0.61 16 22 C -0.10 0.85 5.19 30.61 0.16 1.01 16 23 C -0.12 0.80 5.51 30.61 0.17 0.97 16 24 N -0.59 -2.36 10.46 -197.99 -2.07 -4.43 16 25 C 0.21 0.20 10.99 84.71 0.93 1.13 16 26 H 0.39 -4.09 8.70 -74.06 -0.64 -4.73 16 27 H 0.11 -0.34 7.96 -2.39 -0.02 -0.36 16 28 H -0.28 0.01 7.11 99.48 0.71 0.72 16 29 H -0.30 -0.93 7.11 99.48 0.71 -0.22 16 30 H 0.19 -1.34 5.07 -2.91 -0.01 -1.35 16 31 H 0.42 -1.97 8.72 -92.71 -0.81 -2.78 16 32 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.08 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H 0.08 -0.57 7.76 -2.39 -0.02 -0.58 16 35 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.20 -1.77 8.06 -2.91 -0.02 -1.79 16 37 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 38 H 0.43 -2.58 8.78 -92.71 -0.81 -3.40 16 39 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.07 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H 0.08 -0.63 8.14 -2.39 -0.02 -0.64 16 42 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.18 -0.39 8.06 -2.91 -0.02 -0.41 16 Total: 0.00 -25.84 356.90 -2.53 -28.37 By element: Atomic # 1 Polarization: -20.05 SS G_CDS: -1.15 Total: -21.20 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 7.54 Total: 13.05 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -8.96 Total: -8.24 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -2.01 Total: -10.29 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.05 Total: -1.69 kcal Total: -25.84 -2.53 -28.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13455922_12175864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.283 kcal (2) G-P(sol) polarization free energy of solvation -25.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds