Wall clock time and date at job start Mon Mar 8 2021 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86303 * 109.47445 * 2 1 4 4 C 1.50706 * 109.47300 * 240.00092 * 2 1 3 5 5 C 1.37981 * 120.32870 * 120.02076 * 4 2 1 6 6 N 1.32008 * 120.90211 * 179.72949 * 5 4 2 7 7 C 1.32339 * 121.64294 * 0.51719 * 6 5 4 8 8 N 1.39148 * 119.71551 * 179.75826 * 7 6 5 9 9 C 1.46498 * 120.00249 * 359.72477 * 8 7 6 10 10 H 1.09004 * 109.46682 * 35.00218 * 9 8 7 11 11 C 1.52995 * 109.47100 * 154.99737 * 9 8 7 12 12 C 1.52997 * 109.47183 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47298 * 300.00536 * 12 11 9 14 14 H 1.09004 * 109.47091 * 299.99644 * 13 12 11 15 15 C 1.50703 * 109.47444 * 179.97438 * 13 12 11 16 16 N 1.30640 * 119.25163 * 335.00057 * 15 13 12 17 17 C 1.33524 * 121.50652 * 179.97438 * 16 15 13 18 18 C 1.36191 * 119.90681 * 0.02562 * 17 16 15 19 19 C 1.41019 * 118.59828 * 359.97438 * 18 17 16 20 20 O 1.21984 * 120.71423 * 179.97438 * 19 18 17 21 21 N 1.34747 * 119.25794 * 154.99586 * 15 13 12 22 22 C 1.53004 * 109.47133 * 59.99922 * 13 12 11 23 23 C 1.52996 * 109.46755 * 299.99771 * 22 13 12 24 24 C 1.39343 * 120.56581 * 359.48645 * 7 6 5 25 25 F 1.35099 * 120.47165 * 180.27598 * 24 7 6 26 26 C 1.38445 * 119.05396 * 0.25139 * 24 7 6 27 27 H 0.96705 * 113.99545 * 300.00286 * 1 2 3 28 28 H 1.09001 * 109.47246 * 120.00305 * 2 1 3 29 29 H 1.48500 * 110.00019 * 178.68121 * 3 2 1 30 30 H 1.48497 * 109.99934 * 300.00339 * 3 2 1 31 31 H 1.08000 * 119.55214 * 359.97438 * 5 4 2 32 32 H 0.97000 * 119.99580 * 179.73447 * 8 7 6 33 33 H 1.09004 * 109.46960 * 60.00651 * 11 9 8 34 34 H 1.08996 * 109.47784 * 300.00919 * 11 9 8 35 35 H 1.09002 * 109.47383 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.46758 * 60.00384 * 12 11 9 37 37 H 1.07998 * 120.04594 * 180.02562 * 17 16 15 38 38 H 1.08002 * 120.70573 * 179.97438 * 18 17 16 39 39 H 0.97002 * 120.03423 * 359.97438 * 21 15 13 40 40 H 1.08991 * 109.47116 * 60.00071 * 22 13 12 41 41 H 1.09001 * 109.46902 * 180.02562 * 22 13 12 42 42 H 1.08998 * 109.47385 * 299.99709 * 23 22 13 43 43 H 1.09002 * 109.47047 * 180.02562 * 23 22 13 44 44 H 1.08006 * 120.75401 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7254 -0.0465 -2.1430 6 7 3.1760 -0.6592 -3.2219 7 6 2.8794 -1.9234 -3.4773 8 7 3.3721 -2.5283 -4.6294 9 6 4.2105 -1.7644 -5.5567 10 1 4.8335 -1.0689 -4.9943 11 6 5.1026 -2.7241 -6.3465 12 6 5.9786 -1.9263 -7.3144 13 6 5.0881 -1.1445 -8.2822 14 1 4.4651 -1.8398 -8.8449 15 6 5.9510 -0.3582 -9.2352 16 7 7.1598 -0.0212 -8.8721 17 6 7.9628 0.6747 -9.6807 18 6 7.5248 1.0491 -10.9148 19 6 6.2199 0.6855 -11.3069 20 8 5.7882 1.0010 -12.4033 21 7 5.4582 -0.0186 -10.4425 22 6 4.1960 -0.1847 -7.4923 23 6 3.3200 -0.9826 -6.5245 24 6 2.0824 -2.6555 -2.5995 25 9 1.7853 -3.9476 -2.8593 26 6 1.5998 -2.0401 -1.4571 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5139 0.8900 29 1 3.5347 1.7702 0.0321 30 1 1.5615 2.4679 -1.2084 31 1 2.9851 0.9875 -1.9702 32 1 3.1604 -3.4558 -4.8187 33 1 4.4796 -3.4197 -6.9089 34 1 5.7373 -3.2808 -5.6571 35 1 6.6139 -2.6101 -7.8774 36 1 6.6017 -1.2311 -6.7517 37 1 8.9581 0.9403 -9.3566 38 1 8.1633 1.6126 -11.5791 39 1 4.5577 -0.2802 -10.6904 40 1 4.8190 0.5104 -6.9297 41 1 3.5613 0.3719 -8.1818 42 1 2.6969 -1.6778 -7.0871 43 1 2.6841 -0.2989 -5.9620 44 1 0.9794 -2.5816 -0.7582 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13455922_17656566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:48:31 Heat of formation + Delta-G solvation = -29.899004 kcal Electronic energy + Delta-G solvation = -29866.978977 eV Core-core repulsion = 25507.542279 eV Total energy + Delta-G solvation = -4359.436698 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.89111 -42.86889 -41.49634 -40.15101 -38.65190 -37.91527 -36.41373 -35.40334 -33.46306 -32.87686 -32.08677 -31.50045 -29.86626 -26.69263 -25.86049 -25.39224 -24.62747 -23.88812 -22.94528 -22.36644 -21.15937 -19.77085 -19.36422 -19.02578 -18.63843 -18.31519 -18.00477 -17.80633 -17.05527 -16.85649 -16.79884 -16.39245 -15.87715 -15.65733 -15.58459 -15.53126 -15.37737 -15.04273 -14.74490 -14.51303 -14.36312 -14.18430 -14.10775 -13.93098 -13.82521 -13.54928 -13.35667 -12.71540 -12.59936 -12.44165 -12.35598 -12.10680 -12.05542 -11.96769 -11.52488 -11.23521 -11.18521 -11.10857 -10.77861 -10.68788 -10.35726 -9.57288 -8.79865 -5.06403 -0.47906 -0.11282 0.10463 0.77724 1.18612 1.55060 1.56674 1.86795 1.89080 2.49627 2.53996 2.66110 3.01746 3.14830 3.25407 3.30020 3.42645 3.51433 3.59978 3.60732 3.78285 3.80880 3.95360 3.97811 4.06312 4.13401 4.18019 4.22685 4.23854 4.28086 4.40040 4.49487 4.54296 4.59219 4.65294 4.77806 4.83796 4.86336 4.92932 4.95085 4.98547 5.12098 5.19779 5.36409 5.41223 5.42372 5.90922 6.13288 6.53706 6.68679 6.78949 6.90882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.059 4.059 3 Si 0.681 3.319 4 C -0.163 4.163 5 C 0.141 3.859 6 N -0.509 5.509 7 C 0.391 3.609 8 N -0.714 5.714 9 C 0.155 3.845 10 H 0.096 0.904 11 C -0.130 4.130 12 C -0.094 4.094 13 C -0.047 4.047 14 H 0.101 0.899 15 C 0.404 3.596 16 N -0.533 5.533 17 C 0.156 3.844 18 C -0.293 4.293 19 C 0.520 3.480 20 O -0.537 6.537 21 N -0.627 5.627 22 C -0.107 4.107 23 C -0.127 4.127 24 C -0.018 4.018 25 F -0.132 7.132 26 C -0.035 4.035 27 H 0.384 0.616 28 H 0.077 0.923 29 H -0.251 1.251 30 H -0.247 1.247 31 H 0.154 0.846 32 H 0.412 0.588 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.418 0.582 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -0.736 7.144 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.171 4.171 3 Si 0.582 3.418 4 C -0.168 4.168 5 C -0.015 4.015 6 N -0.226 5.226 7 C 0.152 3.848 8 N -0.346 5.346 9 C 0.050 3.950 10 H 0.114 0.886 11 C -0.168 4.168 12 C -0.132 4.132 13 C -0.067 4.067 14 H 0.119 0.881 15 C 0.139 3.861 16 N -0.256 5.256 17 C 0.018 3.982 18 C -0.318 4.318 19 C 0.318 3.682 20 O -0.415 6.415 21 N -0.265 5.265 22 C -0.146 4.146 23 C -0.166 4.166 24 C -0.045 4.045 25 F -0.111 7.111 26 C -0.061 4.061 27 H 0.232 0.768 28 H 0.094 0.906 29 H -0.175 1.175 30 H -0.172 1.172 31 H 0.171 0.829 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.188 0.812 38 H 0.175 0.825 39 H 0.256 0.744 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.136 0.203 5.411 5.532 hybrid contribution -1.256 -1.429 -0.650 2.011 sum -0.120 -1.227 4.761 4.918 Atomic orbital electron populations 1.86490 1.17199 1.81853 1.49818 1.24467 0.85739 1.10210 0.96635 0.95073 0.80918 0.77961 0.87869 1.19936 1.03684 0.94430 0.98778 1.22126 0.92762 0.98580 0.88076 1.67276 1.26338 1.07596 1.21398 1.18403 0.90147 0.89035 0.87188 1.44640 1.54907 1.14547 1.20532 1.21015 0.91025 0.93419 0.89508 0.88648 1.21866 0.98418 0.98054 0.98455 1.21352 0.96783 0.98880 0.96200 1.20566 0.95285 0.96268 0.94579 0.88129 1.23200 0.90878 0.88806 0.83253 1.68297 1.02702 1.19941 1.34696 1.22760 0.98670 0.87749 0.89026 1.22971 0.96950 1.11104 1.00747 1.17361 0.87110 0.79048 0.84677 1.91030 1.74433 1.55473 1.20553 1.44776 1.19324 1.47108 1.15336 1.21556 0.97640 0.97402 0.98048 1.21931 0.98155 0.99449 0.97054 1.17984 1.06746 0.80958 0.98783 1.91493 1.92194 1.33466 1.93962 1.21260 0.95814 0.94184 0.94829 0.76826 0.90555 1.17539 1.17159 0.82947 0.75086 0.91160 0.90388 0.90609 0.89192 0.81236 0.82515 0.74369 0.90133 0.91168 0.91464 0.90582 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.54 12.75 -35.23 -0.45 0.09 16 2 C -0.06 0.08 2.83 36.01 0.10 0.18 16 3 Si 0.68 -1.58 29.82 -169.99 -5.07 -6.65 16 4 C -0.16 -0.21 5.43 -104.47 -0.57 -0.77 16 5 C 0.14 0.28 9.84 -17.57 -0.17 0.10 16 6 N -0.51 -1.27 9.20 -12.36 -0.11 -1.39 16 7 C 0.39 0.70 7.47 -154.85 -1.16 -0.46 16 8 N -0.71 0.39 5.23 -53.85 -0.28 0.11 16 9 C 0.15 -0.27 2.47 -67.94 -0.17 -0.44 16 10 H 0.10 -0.02 7.54 -51.93 -0.39 -0.41 16 11 C -0.13 0.45 5.39 -26.74 -0.14 0.30 16 12 C -0.09 0.30 4.67 -26.73 -0.12 0.17 16 13 C -0.05 0.16 2.48 -91.77 -0.23 -0.07 16 14 H 0.10 -0.51 8.14 -51.93 -0.42 -0.93 16 15 C 0.40 -0.48 6.73 -155.57 -1.05 -1.53 16 16 N -0.53 0.04 9.11 -10.63 -0.10 -0.06 16 17 C 0.16 -0.05 11.20 -17.55 -0.20 -0.25 16 18 C -0.29 -0.40 10.07 -39.26 -0.40 -0.79 16 19 C 0.52 1.73 7.75 -15.09 -0.12 1.61 16 20 O -0.54 -4.04 17.97 4.93 0.09 -3.95 16 21 N -0.63 0.18 5.25 -12.27 -0.06 0.11 16 22 C -0.11 0.31 5.18 -26.73 -0.14 0.17 16 23 C -0.13 0.27 5.51 -26.73 -0.15 0.12 16 24 C -0.02 -0.04 7.35 -39.09 -0.29 -0.32 16 25 F -0.13 -0.28 16.65 2.25 0.04 -0.25 16 26 C -0.03 -0.05 9.75 -39.26 -0.38 -0.43 16 27 H 0.38 -2.28 8.74 45.56 0.40 -1.88 16 28 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16 29 H -0.25 0.02 7.11 56.52 0.40 0.42 16 30 H -0.25 -0.21 7.11 56.52 0.40 0.20 16 31 H 0.15 0.14 4.88 -52.49 -0.26 -0.11 16 32 H 0.41 -0.72 8.07 -40.82 -0.33 -1.05 16 33 H 0.07 -0.29 8.14 -51.93 -0.42 -0.72 16 34 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 35 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.09 -0.19 7.76 -51.93 -0.40 -0.59 16 37 H 0.17 -0.52 8.06 -52.49 -0.42 -0.95 16 38 H 0.16 0.07 8.06 -52.49 -0.42 -0.36 16 39 H 0.42 -1.01 8.78 -40.82 -0.36 -1.37 16 40 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 41 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 42 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 43 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 44 H 0.15 0.01 8.06 -52.48 -0.42 -0.41 16 LS Contribution 367.35 15.07 5.54 5.54 Total: 0.00 -10.01 367.35 -11.19 -21.20 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: -5.60 Total: -12.36 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -5.17 Total: -2.40 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -0.56 Total: -1.22 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.36 Total: -3.86 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.04 Total: -0.25 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.07 Total: -6.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -10.01 -11.19 -21.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13455922_17656566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.699 kcal (2) G-P(sol) polarization free energy of solvation -10.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds