Wall clock time and date at job start Mon Mar 8 2021 06:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47343 * 2 1 4 4 C 1.50696 * 109.47051 * 120.00481 * 2 1 3 5 5 C 1.33327 * 125.95347 * 64.97254 * 4 2 1 6 6 N 1.32124 * 114.58039 * 179.75373 * 5 4 2 7 7 C 1.29686 * 116.86102 * 0.47458 * 6 5 4 8 8 N 1.38615 * 124.94441 * 179.81225 * 7 6 5 9 9 C 1.46500 * 120.00084 * 359.69604 * 8 7 6 10 10 C 1.53000 * 109.47126 * 185.35172 * 9 8 7 11 11 C 1.50704 * 112.84907 * 59.38715 * 10 9 8 12 12 C 1.38233 * 120.00046 * 257.13445 * 11 10 9 13 13 C 1.38234 * 119.99719 * 180.02562 * 12 11 10 14 14 C 1.38237 * 120.00225 * 359.94892 * 13 12 11 15 15 C 1.38238 * 119.99787 * 0.02562 * 14 13 12 16 16 C 1.38231 * 120.00123 * 0.09240 * 15 14 13 17 17 C 1.53777 * 113.69132 * 288.12200 * 10 9 8 18 18 C 1.53780 * 87.08090 * 270.86785 * 17 10 9 19 19 H 1.09006 * 113.61357 * 89.11762 * 18 17 10 20 20 F 1.39902 * 113.61795 * 220.01584 * 18 17 10 21 21 C 1.53779 * 113.61587 * 190.58200 * 10 9 8 22 22 S 1.70960 * 110.10593 * 359.54643 * 7 6 5 23 23 H 0.96701 * 114.00029 * 59.99601 * 1 2 3 24 24 H 1.09001 * 109.46997 * 240.00013 * 2 1 3 25 25 H 1.48499 * 109.99770 * 60.00187 * 3 2 1 26 26 H 1.48496 * 109.99888 * 181.31743 * 3 2 1 27 27 H 1.07996 * 122.71118 * 359.97438 * 5 4 2 28 28 H 0.97001 * 120.00069 * 179.69013 * 8 7 6 29 29 H 1.09006 * 109.46830 * 65.35661 * 9 8 7 30 30 H 1.08993 * 109.47368 * 305.35431 * 9 8 7 31 31 H 1.08000 * 119.99963 * 359.97438 * 12 11 10 32 32 H 1.08000 * 119.99581 * 179.97438 * 13 12 11 33 33 H 1.07999 * 120.00023 * 179.72386 * 14 13 12 34 34 H 1.08000 * 119.99742 * 179.97438 * 15 14 13 35 35 H 1.07992 * 120.00276 * 179.97438 * 16 15 14 36 36 H 1.08998 * 113.61997 * 25.41904 * 17 10 9 37 37 H 1.09010 * 113.61564 * 156.32314 * 17 10 9 38 38 H 1.08999 * 113.61712 * 203.74798 * 21 10 9 39 39 H 1.08997 * 113.61431 * 334.65813 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7618 -2.0025 1.5123 6 7 2.3018 -2.3915 2.6536 7 6 2.9113 -1.4849 3.3525 8 7 3.5314 -1.7064 4.5723 9 6 3.5226 -3.0457 5.1660 10 6 4.1515 -2.9898 6.5597 11 6 3.4250 -2.0555 7.4926 12 6 3.9514 -0.8076 7.7693 13 6 3.2852 0.0491 8.6254 14 6 2.0921 -0.3415 9.2040 15 6 1.5654 -1.5892 8.9268 16 6 2.2328 -2.4469 8.0726 17 6 5.6750 -2.7812 6.5422 18 6 5.8050 -4.3125 6.4869 19 1 5.8104 -4.7140 5.4735 20 9 6.8439 -4.8157 7.2774 21 6 4.4272 -4.3754 7.1671 22 16 2.8449 0.0215 2.5469 23 1 -0.3933 0.4418 -0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 1.5616 2.4678 1.2085 26 1 3.5346 1.7701 -0.0321 27 1 1.2292 -2.6775 0.8587 28 1 3.9713 -0.9747 5.0327 29 1 4.0954 -3.7262 4.5359 30 1 2.4954 -3.4014 5.2450 31 1 4.8836 -0.5025 7.3173 32 1 3.6968 1.0239 8.8420 33 1 1.5739 0.3262 9.8763 34 1 0.6334 -1.8945 9.3791 35 1 1.8216 -3.4218 7.8563 36 1 6.0368 -2.2796 5.6446 37 1 6.0663 -2.3426 7.4602 38 1 4.4774 -4.3728 8.2559 39 1 3.7817 -5.1608 6.7740 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13458984_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:13 Heat of formation + Delta-G solvation = 26.505967 kcal Electronic energy + Delta-G solvation = -24293.572695 eV Core-core repulsion = 20630.805780 eV Total energy + Delta-G solvation = -3662.766915 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.56904 -41.63766 -40.54278 -38.99261 -37.85544 -36.22421 -32.22898 -31.98307 -31.51954 -28.88338 -27.33632 -26.27952 -25.28145 -24.06852 -23.33089 -22.65564 -20.72916 -20.44656 -19.25178 -18.46124 -18.34720 -17.63988 -17.53465 -16.71587 -16.52013 -16.23709 -16.01861 -15.65418 -15.56581 -15.48070 -15.42163 -14.80972 -14.62617 -14.47995 -14.39374 -14.22112 -13.79438 -13.66694 -13.53357 -12.83055 -12.61109 -12.54859 -12.41948 -12.29360 -12.06092 -11.95806 -11.58705 -11.41675 -11.14112 -10.63922 -10.31376 -10.14903 -9.93282 -9.75499 -8.75158 -5.21664 -0.04471 0.09763 0.30812 0.38634 0.67128 1.22950 1.57625 1.92589 2.01146 2.05811 2.72080 2.97635 3.06630 3.25751 3.39091 3.45277 3.48719 3.71591 3.73970 3.96131 3.97981 3.98944 4.06356 4.15207 4.39007 4.40748 4.44481 4.48891 4.50839 4.56095 4.57866 4.67150 4.75515 4.80696 4.96526 5.00966 5.07363 5.12201 5.46256 5.51128 5.54045 5.76930 5.96141 5.99101 6.59058 6.98214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.017 4.017 3 Si 0.667 3.333 4 C -0.261 4.261 5 C 0.124 3.876 6 N -0.547 5.547 7 C 0.331 3.669 8 N -0.688 5.688 9 C 0.162 3.838 10 C -0.057 4.057 11 C -0.067 4.067 12 C -0.120 4.120 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.153 4.153 18 C 0.066 3.934 19 H 0.112 0.888 20 F -0.203 7.203 21 C -0.139 4.139 22 S 0.070 5.930 23 H 0.383 0.617 24 H 0.082 0.918 25 H -0.239 1.239 26 H -0.243 1.243 27 H 0.178 0.822 28 H 0.414 0.586 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 2.299 -2.325 3.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.131 4.131 3 Si 0.567 3.433 4 C -0.383 4.383 5 C -0.027 4.027 6 N -0.273 5.273 7 C -0.039 4.039 8 N -0.328 5.328 9 C 0.036 3.964 10 C -0.058 4.058 11 C -0.067 4.067 12 C -0.138 4.138 13 C -0.133 4.133 14 C -0.137 4.137 15 C -0.132 4.132 16 C -0.126 4.126 17 C -0.190 4.190 18 C 0.030 3.970 19 H 0.130 0.870 20 F -0.184 7.184 21 C -0.177 4.177 22 S 0.318 5.682 23 H 0.231 0.769 24 H 0.100 0.900 25 H -0.162 1.162 26 H -0.167 1.167 27 H 0.195 0.805 28 H 0.252 0.748 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.386 2.842 -0.819 2.983 hybrid contribution -0.265 -0.786 -0.070 0.832 sum 0.120 2.057 -0.889 2.244 Atomic orbital electron populations 1.86526 1.17195 1.81731 1.49742 1.23675 0.85452 1.09271 0.94657 0.95179 0.81775 0.78172 0.88202 1.24276 1.14731 0.96851 1.02482 1.21345 0.96227 0.93046 0.92064 1.66476 1.19036 1.33069 1.08695 1.23742 0.95398 0.92969 0.91803 1.43886 1.59364 1.12168 1.17366 1.21166 1.01855 0.83333 0.90007 1.20799 0.94626 0.96292 0.94042 1.19374 0.95392 0.94370 0.97607 1.21012 1.00074 0.93587 0.99173 1.21173 0.95428 0.99666 0.97054 1.21233 0.96134 0.96566 0.99817 1.21199 0.99904 0.94119 0.98027 1.20972 0.94623 0.99916 0.97128 1.23777 0.94374 0.96319 1.04577 1.23085 0.84613 0.94483 0.94819 0.87008 1.92832 1.60594 1.88817 1.76163 1.23645 0.96063 0.95643 1.02343 1.84113 1.55897 1.12250 1.15938 0.76940 0.90003 1.16227 1.16689 0.80460 0.74818 0.90746 0.90171 0.86108 0.85862 0.85924 0.85836 0.85975 0.89746 0.87853 0.87775 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.19 12.86 -35.23 -0.45 -0.65 16 2 C -0.02 0.00 2.98 36.00 0.11 0.10 16 3 Si 0.67 -0.39 31.07 -169.99 -5.28 -5.67 16 4 C -0.26 -0.76 5.76 -36.03 -0.21 -0.97 16 5 C 0.12 0.41 11.24 -19.14 -0.22 0.19 16 6 N -0.55 -2.23 10.14 -15.21 -0.15 -2.39 16 7 C 0.33 0.93 8.09 -87.68 -0.71 0.22 16 8 N -0.69 -0.24 5.46 -62.30 -0.34 -0.58 16 9 C 0.16 -0.11 5.20 -4.04 -0.02 -0.13 16 10 C -0.06 0.10 0.63 -154.85 -0.10 0.00 16 11 C -0.07 0.03 4.41 -104.62 -0.46 -0.43 16 12 C -0.12 0.06 8.43 -39.58 -0.33 -0.27 16 13 C -0.12 0.01 10.05 -39.58 -0.40 -0.39 16 14 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 15 C -0.11 -0.04 10.05 -39.58 -0.40 -0.44 16 16 C -0.11 -0.01 9.39 -39.58 -0.37 -0.39 16 17 C -0.15 0.28 6.08 -25.92 -0.16 0.12 16 18 C 0.07 -0.07 5.32 -25.92 -0.14 -0.20 16 19 H 0.11 -0.26 7.60 -51.93 -0.39 -0.65 16 20 F -0.20 -0.47 17.41 2.25 0.04 -0.43 16 21 C -0.14 0.24 6.76 -25.92 -0.18 0.06 16 22 S 0.07 0.19 20.59 -107.50 -2.21 -2.02 16 23 H 0.38 -1.86 8.74 45.56 0.40 -1.46 16 24 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 25 H -0.24 -0.63 7.11 56.52 0.40 -0.23 16 26 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 27 H 0.18 0.26 8.06 -52.49 -0.42 -0.16 16 28 H 0.41 -0.37 7.81 -40.82 -0.32 -0.69 16 29 H 0.07 -0.06 7.30 -51.93 -0.38 -0.44 16 30 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 31 H 0.12 -0.25 7.03 -52.49 -0.37 -0.62 16 32 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 33 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 34 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 35 H 0.12 -0.12 8.03 -52.49 -0.42 -0.54 16 36 H 0.08 -0.20 8.10 -51.93 -0.42 -0.62 16 37 H 0.10 -0.14 7.45 -51.92 -0.39 -0.53 16 38 H 0.10 -0.11 8.09 -51.93 -0.42 -0.53 16 39 H 0.09 -0.24 8.10 -51.93 -0.42 -0.66 16 LS Contribution 342.75 15.07 5.17 5.17 Total: 0.00 -7.29 342.75 -12.07 -19.36 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: -4.86 Total: -9.84 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.97 Total: -2.95 kcal Atomic # 7 Polarization: -2.48 SS G_CDS: -0.49 Total: -2.97 kcal Atomic # 8 Polarization: -0.19 SS G_CDS: -0.45 Total: -0.65 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.04 Total: -0.43 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.28 Total: -5.67 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.21 Total: -2.02 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -7.29 -12.07 -19.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13458984_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.863 kcal (2) G-P(sol) polarization free energy of solvation -7.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds