Wall clock time and date at job start Mon Mar 8 2021 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47343 * 2 1 4 4 C 1.50696 * 109.47051 * 120.00481 * 2 1 3 5 5 C 1.33327 * 125.95347 * 64.97254 * 4 2 1 6 6 N 1.32124 * 114.58039 * 179.75373 * 5 4 2 7 7 C 1.29686 * 116.86102 * 0.47458 * 6 5 4 8 8 N 1.38615 * 124.94441 * 179.81225 * 7 6 5 9 9 C 1.46500 * 120.00084 * 359.69604 * 8 7 6 10 10 C 1.53000 * 109.47126 * 185.35172 * 9 8 7 11 11 C 1.50704 * 112.84907 * 59.38715 * 10 9 8 12 12 C 1.38233 * 120.00046 * 257.13445 * 11 10 9 13 13 C 1.38234 * 119.99719 * 180.02562 * 12 11 10 14 14 C 1.38237 * 120.00225 * 359.94892 * 13 12 11 15 15 C 1.38238 * 119.99787 * 0.02562 * 14 13 12 16 16 C 1.38231 * 120.00123 * 0.09240 * 15 14 13 17 17 C 1.53777 * 113.69132 * 288.12200 * 10 9 8 18 18 C 1.53780 * 87.08090 * 270.86785 * 17 10 9 19 19 H 1.09006 * 113.61357 * 89.11762 * 18 17 10 20 20 F 1.39902 * 113.61795 * 220.01584 * 18 17 10 21 21 C 1.53779 * 113.61587 * 190.58200 * 10 9 8 22 22 S 1.70960 * 110.10593 * 359.54643 * 7 6 5 23 23 H 0.96701 * 114.00029 * 59.99601 * 1 2 3 24 24 H 1.09001 * 109.46997 * 240.00013 * 2 1 3 25 25 H 1.48499 * 109.99770 * 60.00187 * 3 2 1 26 26 H 1.48496 * 109.99888 * 181.31743 * 3 2 1 27 27 H 1.07996 * 122.71118 * 359.97438 * 5 4 2 28 28 H 0.97001 * 120.00069 * 179.69013 * 8 7 6 29 29 H 1.09006 * 109.46830 * 65.35661 * 9 8 7 30 30 H 1.08993 * 109.47368 * 305.35431 * 9 8 7 31 31 H 1.08000 * 119.99963 * 359.97438 * 12 11 10 32 32 H 1.08000 * 119.99581 * 179.97438 * 13 12 11 33 33 H 1.07999 * 120.00023 * 179.72386 * 14 13 12 34 34 H 1.08000 * 119.99742 * 179.97438 * 15 14 13 35 35 H 1.07992 * 120.00276 * 179.97438 * 16 15 14 36 36 H 1.08998 * 113.61997 * 25.41904 * 17 10 9 37 37 H 1.09010 * 113.61564 * 156.32314 * 17 10 9 38 38 H 1.08999 * 113.61712 * 203.74798 * 21 10 9 39 39 H 1.08997 * 113.61431 * 334.65813 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7618 -2.0025 1.5123 6 7 2.3018 -2.3915 2.6536 7 6 2.9113 -1.4849 3.3525 8 7 3.5314 -1.7064 4.5723 9 6 3.5226 -3.0457 5.1660 10 6 4.1515 -2.9898 6.5597 11 6 3.4250 -2.0555 7.4926 12 6 3.9514 -0.8076 7.7693 13 6 3.2852 0.0491 8.6254 14 6 2.0921 -0.3415 9.2040 15 6 1.5654 -1.5892 8.9268 16 6 2.2328 -2.4469 8.0726 17 6 5.6750 -2.7812 6.5422 18 6 5.8050 -4.3125 6.4869 19 1 5.8104 -4.7140 5.4735 20 9 6.8439 -4.8157 7.2774 21 6 4.4272 -4.3754 7.1671 22 16 2.8449 0.0215 2.5469 23 1 -0.3933 0.4418 -0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 1.5616 2.4678 1.2085 26 1 3.5346 1.7701 -0.0321 27 1 1.2292 -2.6775 0.8587 28 1 3.9713 -0.9747 5.0327 29 1 4.0954 -3.7262 4.5359 30 1 2.4954 -3.4014 5.2450 31 1 4.8836 -0.5025 7.3173 32 1 3.6968 1.0239 8.8420 33 1 1.5739 0.3262 9.8763 34 1 0.6334 -1.8945 9.3791 35 1 1.8216 -3.4218 7.8563 36 1 6.0368 -2.2796 5.6446 37 1 6.0663 -2.3426 7.4602 38 1 4.4774 -4.3728 8.2559 39 1 3.7817 -5.1608 6.7740 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13458984_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:12 Heat of formation + Delta-G solvation = 31.241261 kcal Electronic energy + Delta-G solvation = -24293.367357 eV Core-core repulsion = 20630.805780 eV Total energy + Delta-G solvation = -3662.561577 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.62490 -41.60030 -40.67427 -38.94237 -37.83796 -36.27366 -32.20055 -31.93616 -31.58952 -28.90054 -27.23631 -26.34488 -25.26422 -24.15596 -23.28805 -22.60222 -20.81633 -20.50136 -19.27839 -18.42776 -18.31756 -17.68763 -17.52610 -16.68143 -16.51618 -16.28237 -16.09380 -15.70841 -15.56531 -15.51117 -15.44574 -14.79505 -14.67485 -14.55651 -14.34155 -14.29018 -13.77891 -13.61398 -13.45979 -12.91210 -12.58855 -12.54156 -12.44668 -12.25372 -12.16876 -11.90472 -11.58135 -11.32144 -11.15645 -10.80730 -10.43153 -10.23656 -9.90465 -9.72266 -8.87258 -5.19624 -0.20769 -0.05785 0.33807 0.41292 0.51066 1.23636 1.56331 1.84767 1.92006 1.97724 2.75204 3.06906 3.14032 3.34533 3.48352 3.52543 3.54909 3.66218 3.82383 3.97624 4.04137 4.05438 4.14731 4.22596 4.43039 4.47603 4.50421 4.58461 4.61048 4.62573 4.63388 4.65949 4.79112 4.88526 4.95671 5.02976 5.06951 5.21550 5.50170 5.54700 5.56708 5.67153 5.94253 6.02433 6.81855 6.92288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.022 4.022 3 Si 0.754 3.246 4 C -0.273 4.273 5 C 0.111 3.889 6 N -0.568 5.568 7 C 0.329 3.671 8 N -0.680 5.680 9 C 0.166 3.834 10 C -0.044 4.044 11 C -0.071 4.071 12 C -0.126 4.126 13 C -0.126 4.126 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.121 4.121 17 C -0.148 4.148 18 C 0.058 3.942 19 H 0.127 0.873 20 F -0.223 7.223 21 C -0.135 4.135 22 S 0.049 5.951 23 H 0.405 0.595 24 H 0.108 0.892 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.191 0.809 28 H 0.420 0.580 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 2.263 -3.164 3.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.136 4.136 3 Si 0.658 3.342 4 C -0.395 4.395 5 C -0.039 4.039 6 N -0.295 5.295 7 C -0.042 4.042 8 N -0.320 5.320 9 C 0.040 3.960 10 C -0.045 4.045 11 C -0.071 4.071 12 C -0.144 4.144 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.139 4.139 17 C -0.185 4.185 18 C 0.022 3.978 19 H 0.145 0.855 20 F -0.204 7.204 21 C -0.173 4.173 22 S 0.297 5.703 23 H 0.256 0.744 24 H 0.126 0.874 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.208 0.792 28 H 0.259 0.741 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.355 2.801 -1.676 3.284 hybrid contribution -0.277 -0.740 0.231 0.823 sum 0.078 2.061 -1.445 2.519 Atomic orbital electron populations 1.86471 1.17096 1.82318 1.51521 1.23830 0.85687 1.09602 0.94444 0.94248 0.78531 0.75868 0.85525 1.24642 1.14691 0.97000 1.03174 1.21615 0.96472 0.93569 0.92205 1.66488 1.19912 1.33695 1.09362 1.23896 0.95285 0.92695 0.92292 1.43971 1.58603 1.12809 1.16584 1.21168 1.01466 0.82853 0.90467 1.20629 0.94512 0.96180 0.93174 1.19501 0.95311 0.94629 0.97660 1.21239 1.00605 0.93521 0.99065 1.21425 0.95491 1.00393 0.97125 1.21461 0.96549 0.96862 1.00247 1.21415 1.00477 0.94396 0.98375 1.21166 0.95019 1.00350 0.97341 1.23746 0.93981 0.95893 1.04889 1.23352 0.84168 0.94995 0.95261 0.85544 1.92790 1.61617 1.89151 1.76844 1.23617 0.95875 0.95880 1.01952 1.84163 1.56505 1.12876 1.16776 0.74356 0.87438 1.21294 1.20079 0.79185 0.74142 0.90149 0.91162 0.84665 0.84655 0.84989 0.85011 0.85299 0.88847 0.88114 0.88420 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.13 12.86 -148.98 -1.92 -1.79 16 2 C -0.02 0.01 2.98 71.23 0.21 0.22 16 3 Si 0.75 -0.90 31.07 68.60 2.13 1.24 16 4 C -0.27 -1.63 5.76 24.57 0.14 -1.49 16 5 C 0.11 0.76 11.24 83.54 0.94 1.70 16 6 N -0.57 -4.86 10.14 -202.03 -2.05 -6.91 16 7 C 0.33 2.01 8.09 179.32 1.45 3.46 16 8 N -0.68 -0.59 5.46 -351.01 -1.92 -2.51 16 9 C 0.17 -0.24 5.20 86.38 0.45 0.21 16 10 C -0.04 0.16 0.63 -52.40 -0.03 0.12 16 11 C -0.07 0.05 4.41 -19.86 -0.09 -0.03 16 12 C -0.13 0.12 8.43 22.27 0.19 0.31 16 13 C -0.13 -0.02 10.05 22.27 0.22 0.21 16 14 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 15 C -0.13 -0.17 10.05 22.27 0.22 0.05 16 16 C -0.12 -0.09 9.39 22.27 0.21 0.12 16 17 C -0.15 0.59 6.08 31.12 0.19 0.78 16 18 C 0.06 -0.13 5.32 31.12 0.17 0.04 16 19 H 0.13 -0.68 7.60 -2.38 -0.02 -0.70 16 20 F -0.22 -1.08 17.41 44.97 0.78 -0.30 16 21 C -0.14 0.48 6.76 31.12 0.21 0.69 16 22 S 0.05 0.31 20.59 -56.49 -1.16 -0.85 16 23 H 0.40 -4.53 8.74 -74.06 -0.65 -5.18 16 24 H 0.11 -0.57 7.96 -2.39 -0.02 -0.59 16 25 H -0.29 -1.90 7.11 99.48 0.71 -1.19 16 26 H -0.27 -1.08 7.11 99.48 0.71 -0.37 16 27 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 28 H 0.42 -0.73 7.81 -92.71 -0.72 -1.46 16 29 H 0.08 -0.18 7.30 -2.38 -0.02 -0.20 16 30 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.14 -0.62 7.03 -2.91 -0.02 -0.64 16 32 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 33 H 0.13 -0.24 8.06 -2.91 -0.02 -0.26 16 34 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 35 H 0.13 -0.18 8.03 -2.91 -0.02 -0.21 16 36 H 0.09 -0.52 8.10 -2.39 -0.02 -0.54 16 37 H 0.10 -0.30 7.45 -2.38 -0.02 -0.32 16 38 H 0.10 -0.18 8.09 -2.39 -0.02 -0.20 16 39 H 0.10 -0.58 8.10 -2.39 -0.02 -0.60 16 Total: 0.00 -17.51 342.75 0.33 -17.18 By element: Atomic # 1 Polarization: -12.28 SS G_CDS: -0.25 Total: -12.53 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 4.70 Total: 6.46 kcal Atomic # 7 Polarization: -5.45 SS G_CDS: -3.97 Total: -9.41 kcal Atomic # 8 Polarization: 0.13 SS G_CDS: -1.92 Total: -1.79 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.78 Total: -0.30 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: 2.13 Total: 1.24 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.16 Total: -0.85 kcal Total: -17.51 0.33 -17.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13458984_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.420 kcal (2) G-P(sol) polarization free energy of solvation -17.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds