Wall clock time and date at job start Mon Mar 8 2021 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47215 * 2 1 4 4 C 1.50697 * 109.46897 * 119.99849 * 2 1 3 5 5 C 1.37982 * 120.32799 * 244.99902 * 4 2 1 6 6 N 1.32004 * 120.90356 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64738 * 0.02562 * 6 5 4 8 8 N 1.39142 * 119.71683 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00366 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47393 * 184.79155 * 9 8 7 11 11 C 1.50698 * 112.85119 * 63.63743 * 10 9 8 12 12 C 1.38240 * 119.99884 * 66.07704 * 11 10 9 13 13 C 1.38227 * 119.99918 * 179.72912 * 12 11 10 14 14 C 1.38235 * 120.00351 * 0.24834 * 13 12 11 15 15 C 1.38240 * 119.99740 * 0.03260 * 14 13 12 16 16 C 1.38233 * 120.00078 * 359.94742 * 15 14 13 17 17 C 1.53782 * 113.61183 * 292.44491 * 10 9 8 18 18 C 1.53781 * 87.08327 * 270.79861 * 17 10 9 19 19 H 1.08999 * 113.61676 * 89.19836 * 18 17 10 20 20 F 1.39895 * 113.61648 * 220.02225 * 18 17 10 21 21 C 1.53785 * 113.61452 * 194.83881 * 10 9 8 22 22 C 1.39336 * 120.56248 * 0.25450 * 7 6 5 23 23 F 1.35098 * 120.47445 * 179.72038 * 22 7 6 24 24 C 1.38450 * 119.05763 * 359.49282 * 22 7 6 25 25 H 0.96706 * 113.99829 * 60.00079 * 1 2 3 26 26 H 1.09000 * 109.47059 * 239.99987 * 2 1 3 27 27 H 1.48502 * 109.99840 * 298.68366 * 3 2 1 28 28 H 1.48498 * 110.00044 * 59.99419 * 3 2 1 29 29 H 1.08000 * 119.54714 * 359.95801 * 5 4 2 30 30 H 0.97006 * 119.99765 * 179.97438 * 8 7 6 31 31 H 1.08999 * 109.47073 * 64.79100 * 9 8 7 32 32 H 1.08999 * 109.47263 * 304.78737 * 9 8 7 33 33 H 1.08001 * 119.99854 * 0.02562 * 12 11 10 34 34 H 1.08004 * 119.99941 * 180.27513 * 13 12 11 35 35 H 1.07995 * 120.00076 * 180.02562 * 14 13 12 36 36 H 1.08001 * 119.99921 * 179.97438 * 15 14 13 37 37 H 1.07989 * 119.99973 * 180.02562 * 16 15 14 38 38 H 1.09002 * 113.61759 * 25.34495 * 17 10 9 39 39 H 1.09000 * 113.61188 * 156.16709 * 17 10 9 40 40 H 1.09000 * 113.61292 * 203.74646 * 21 10 9 41 41 H 1.08995 * 113.61514 * 334.64846 * 21 10 9 42 42 H 1.07992 * 120.76234 * 180.24365 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6381 -0.0201 2.1938 6 7 3.0828 -0.6309 3.2762 7 6 2.8719 -1.9211 3.4816 8 7 3.3595 -2.5244 4.6368 9 6 4.1032 -1.7319 5.6191 10 6 4.6253 -2.6506 6.7256 11 6 5.6151 -3.6693 6.2221 12 6 6.8425 -3.2590 5.7361 13 6 7.7525 -4.1938 5.2794 14 6 7.4333 -5.5386 5.3038 15 6 6.2036 -5.9484 5.7844 16 6 5.2937 -5.0136 6.2415 17 6 3.5141 -3.2522 7.6021 18 6 3.6553 -2.0095 8.4968 19 1 3.0173 -1.1790 8.1946 20 9 3.5692 -2.2908 9.8645 21 6 5.1008 -1.8968 7.9789 22 6 2.1708 -2.6819 2.5483 23 9 1.9613 -4.0001 2.7571 24 6 1.6877 -2.0666 1.4059 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 -0.8900 27 1 1.5878 2.4585 -1.2242 28 1 1.5614 2.4679 1.2084 29 1 2.8302 1.0342 2.0602 30 1 3.2069 -3.4697 4.7917 31 1 3.4445 -0.9792 6.0524 32 1 4.9433 -1.2405 5.1284 33 1 7.0922 -2.2084 5.7177 34 1 8.7132 -3.8736 4.9038 35 1 8.1445 -6.2689 4.9473 36 1 5.9541 -6.9991 5.8031 37 1 4.3333 -5.3339 6.6173 38 1 2.5497 -3.3205 7.0988 39 1 3.8014 -4.1813 8.0946 40 1 5.8231 -2.4538 8.5757 41 1 5.4154 -0.8725 7.7792 42 1 1.1373 -2.6291 0.6664 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13458984_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:19 Heat of formation + Delta-G solvation = -25.342656 kcal Electronic energy + Delta-G solvation = -28406.137348 eV Core-core repulsion = 24182.515885 eV Total energy + Delta-G solvation = -4223.621462 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.82452 -48.52707 -41.68023 -41.10454 -38.96149 -38.08535 -36.30025 -33.29394 -32.26156 -31.91480 -31.61730 -28.57041 -27.27839 -26.15924 -25.39694 -24.17637 -23.27626 -22.73094 -22.55288 -20.16999 -19.08656 -18.68506 -18.46917 -18.16832 -17.97944 -17.51541 -16.86631 -16.66765 -16.43306 -16.31524 -15.78740 -15.72602 -15.53716 -15.38323 -15.31209 -15.09514 -14.68184 -14.36427 -14.30985 -14.20042 -13.97541 -13.82984 -13.67747 -13.61201 -13.45422 -12.64085 -12.54680 -12.45136 -12.24886 -12.05074 -11.86033 -11.58178 -11.37003 -11.16756 -10.71488 -10.66721 -10.47243 -9.87285 -9.69105 -8.73447 -5.03565 -0.02348 0.16651 0.36615 0.44796 1.19420 1.52435 1.88506 1.91193 2.55342 2.77705 3.03185 3.06958 3.12480 3.22363 3.29767 3.43241 3.46237 3.58618 3.64171 3.78917 3.88415 4.02312 4.03651 4.10811 4.12264 4.19998 4.24921 4.44517 4.50906 4.51434 4.55418 4.57675 4.60354 4.65814 4.72655 4.74570 4.87769 5.01938 5.02735 5.07150 5.17380 5.36998 5.52238 5.57917 5.59590 5.93188 6.02880 6.17484 6.37295 6.97249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.063 4.063 3 Si 0.680 3.320 4 C -0.162 4.162 5 C 0.150 3.850 6 N -0.512 5.512 7 C 0.392 3.608 8 N -0.712 5.712 9 C 0.160 3.840 10 C -0.057 4.057 11 C -0.067 4.067 12 C -0.108 4.108 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.155 4.155 18 C 0.066 3.934 19 H 0.112 0.888 20 F -0.204 7.204 21 C -0.138 4.138 22 C -0.020 4.020 23 F -0.134 7.134 24 C -0.037 4.037 25 H 0.381 0.619 26 H 0.078 0.922 27 H -0.258 1.258 28 H -0.251 1.251 29 H 0.164 0.836 30 H 0.413 0.587 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 0.997 -2.972 4.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.173 4.173 3 Si 0.581 3.419 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.229 5.229 7 C 0.153 3.847 8 N -0.346 5.346 9 C 0.036 3.964 10 C -0.057 4.057 11 C -0.067 4.067 12 C -0.126 4.126 13 C -0.134 4.134 14 C -0.138 4.138 15 C -0.134 4.134 16 C -0.136 4.136 17 C -0.193 4.193 18 C 0.030 3.970 19 H 0.129 0.871 20 F -0.185 7.185 21 C -0.176 4.176 22 C -0.046 4.046 23 F -0.112 7.112 24 C -0.063 4.063 25 H 0.229 0.771 26 H 0.096 0.904 27 H -0.183 1.183 28 H -0.175 1.175 29 H 0.180 0.820 30 H 0.251 0.749 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.193 2.058 -1.594 4.119 hybrid contribution -1.681 -1.385 -1.073 2.428 sum 1.511 0.673 -2.666 3.137 Atomic orbital electron populations 1.86599 1.17823 1.80164 1.49872 1.24567 0.84444 1.10826 0.97492 0.95147 0.91551 0.74439 0.80777 1.19806 1.04667 0.93705 0.98547 1.22314 0.91863 0.99340 0.87164 1.67319 1.25248 1.07234 1.23088 1.18376 0.90562 0.88968 0.86782 1.44386 1.59222 1.12195 1.18779 1.21083 0.96015 0.91947 0.87383 1.20801 0.95395 0.95646 0.93867 1.19373 0.94506 0.93300 0.99536 1.20949 0.93338 0.99728 0.98615 1.21177 0.99516 0.93218 0.99482 1.21223 0.96948 0.96107 0.99547 1.21177 0.93988 0.99643 0.98575 1.21074 0.99807 0.92407 1.00348 1.23786 0.99425 0.98873 0.97189 1.23121 0.98700 0.99140 0.76062 0.87070 1.92826 1.97231 1.94818 1.33601 1.23660 0.96828 1.02145 0.94955 1.17959 1.08786 0.79460 0.98382 1.91490 1.93735 1.31079 1.94943 1.21256 0.95317 0.94500 0.95252 0.77090 0.90413 1.18261 1.17545 0.81980 0.74948 0.90946 0.90190 0.86028 0.85912 0.86009 0.85924 0.85939 0.89729 0.87856 0.87918 0.89286 0.83453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.20 12.82 -35.23 -0.45 -0.65 16 2 C -0.06 0.06 2.81 36.00 0.10 0.16 16 3 Si 0.68 -1.31 29.87 -169.99 -5.08 -6.39 16 4 C -0.16 -0.12 5.39 -104.47 -0.56 -0.68 16 5 C 0.15 0.11 9.84 -17.57 -0.17 -0.06 16 6 N -0.51 -0.99 9.57 -12.37 -0.12 -1.11 16 7 C 0.39 0.74 7.49 -154.86 -1.16 -0.42 16 8 N -0.71 -0.12 5.37 -60.34 -0.32 -0.45 16 9 C 0.16 -0.18 4.85 -4.04 -0.02 -0.20 16 10 C -0.06 0.10 0.62 -154.85 -0.10 0.00 16 11 C -0.07 0.03 4.56 -104.62 -0.48 -0.45 16 12 C -0.11 0.01 9.37 -39.58 -0.37 -0.36 16 13 C -0.12 -0.01 10.05 -39.59 -0.40 -0.41 16 14 C -0.12 -0.03 10.05 -39.58 -0.40 -0.42 16 15 C -0.12 -0.02 10.05 -39.58 -0.40 -0.41 16 16 C -0.12 0.02 9.05 -39.58 -0.36 -0.34 16 17 C -0.16 0.24 6.04 -25.92 -0.16 0.08 16 18 C 0.07 -0.06 5.32 -25.82 -0.14 -0.19 16 19 H 0.11 -0.24 7.61 -51.93 -0.40 -0.64 16 20 F -0.20 -0.50 17.41 2.25 0.04 -0.46 16 21 C -0.14 0.24 7.01 -25.82 -0.18 0.06 16 22 C -0.02 -0.04 7.35 -39.10 -0.29 -0.33 16 23 F -0.13 -0.36 16.65 2.25 0.04 -0.33 16 24 C -0.04 -0.05 9.82 -39.25 -0.39 -0.44 16 25 H 0.38 -1.36 8.74 45.56 0.40 -0.96 16 26 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 27 H -0.26 -0.04 7.11 56.52 0.40 0.36 16 28 H -0.25 -0.25 7.05 56.52 0.40 0.15 16 29 H 0.16 -0.23 4.87 -52.49 -0.26 -0.48 16 30 H 0.41 -0.08 7.72 -40.82 -0.31 -0.40 16 31 H 0.07 -0.09 7.31 -51.93 -0.38 -0.47 16 32 H 0.08 -0.05 8.00 -51.93 -0.42 -0.47 16 33 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 34 H 0.12 -0.17 8.06 -52.48 -0.42 -0.59 16 35 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 36 H 0.12 -0.15 8.06 -52.49 -0.42 -0.58 16 37 H 0.12 -0.18 6.43 -52.49 -0.34 -0.51 16 38 H 0.08 -0.15 8.00 -51.93 -0.42 -0.57 16 39 H 0.10 -0.12 6.81 -51.93 -0.35 -0.48 16 40 H 0.10 -0.10 8.09 -51.93 -0.42 -0.52 16 41 H 0.09 -0.25 8.10 -51.93 -0.42 -0.67 16 42 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 LS Contribution 355.44 15.07 5.36 5.36 Total: 0.00 -6.39 355.44 -11.04 -17.42 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -5.04 Total: -9.00 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -5.46 Total: -4.40 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -0.44 Total: -1.56 kcal Atomic # 8 Polarization: -0.20 SS G_CDS: -0.45 Total: -0.65 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.08 Total: -0.79 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.08 Total: -6.39 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -6.39 -11.04 -17.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13458984_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.919 kcal (2) G-P(sol) polarization free energy of solvation -6.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds