Wall clock time and date at job start Mon Mar 8 2021 07:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47052 * 2 1 4 4 C 1.50700 * 109.47224 * 120.00103 * 2 1 3 5 5 C 1.33323 * 125.95232 * 64.71616 * 4 2 1 6 6 N 1.32115 * 114.58156 * 180.26731 * 5 4 2 7 7 C 1.29684 * 116.86689 * 359.97438 * 6 5 4 8 8 N 1.38608 * 124.95073 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00285 * 0.02562 * 8 7 6 10 10 H 1.09005 * 109.46946 * 34.99559 * 9 8 7 11 11 C 1.53002 * 109.47336 * 154.99408 * 9 8 7 12 12 C 1.53009 * 109.46946 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47085 * 300.00474 * 12 11 9 14 14 H 1.09005 * 109.46859 * 299.99969 * 13 12 11 15 15 C 1.52998 * 109.47057 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47339 * 174.99711 * 15 13 12 17 17 O 1.42904 * 109.47382 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47615 * 59.99936 * 13 12 11 19 19 C 1.52999 * 109.46913 * 300.00136 * 18 13 12 20 20 S 1.70962 * 110.10214 * 0.02562 * 7 6 5 21 21 H 0.96697 * 114.00078 * 299.99943 * 1 2 3 22 22 H 1.08999 * 109.47263 * 240.00372 * 2 1 3 23 23 H 1.48496 * 110.00087 * 300.00208 * 3 2 1 24 24 H 1.48505 * 109.99878 * 61.32240 * 3 2 1 25 25 H 1.08005 * 122.70971 * 0.23936 * 5 4 2 26 26 H 0.97003 * 120.00312 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47121 * 299.99716 * 11 9 8 28 28 H 1.08994 * 109.46951 * 60.00692 * 11 9 8 29 29 H 1.09002 * 109.46741 * 60.00171 * 12 11 9 30 30 H 1.09000 * 109.46812 * 180.02562 * 12 11 9 31 31 H 1.09009 * 109.47071 * 294.99510 * 15 13 12 32 32 H 1.09001 * 109.47176 * 54.99462 * 15 13 12 33 33 H 1.08998 * 109.47280 * 299.99674 * 16 15 13 34 34 H 1.09001 * 109.47190 * 59.99759 * 16 15 13 35 35 H 0.96700 * 113.99925 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.46670 * 60.00035 * 18 13 12 37 37 H 1.09001 * 109.47266 * 179.97438 * 18 13 12 38 38 H 1.09005 * 109.47274 * 299.99791 * 19 18 13 39 39 H 1.09000 * 109.46779 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7577 -2.0014 1.5147 6 7 2.2895 -2.3882 2.6605 7 6 2.9047 -1.4831 3.3563 8 7 3.5206 -1.7034 4.5783 9 6 3.5064 -3.0412 5.1752 10 1 3.5701 -3.7914 4.3869 11 6 4.7008 -3.1911 6.1195 12 6 4.6863 -4.5886 6.7424 13 6 3.3877 -4.7835 7.5275 14 1 3.3238 -4.0336 8.3160 15 6 3.3735 -6.1807 8.1508 16 6 2.1354 -6.3313 9.0370 17 8 2.1217 -7.6365 9.6187 18 6 2.1933 -4.6337 6.5831 19 6 2.2078 -3.2363 5.9603 20 16 2.8440 0.0218 2.5474 21 1 -0.3933 0.4417 0.7650 22 1 1.7923 -0.5138 -0.8900 23 1 1.5614 2.4679 -1.2084 24 1 1.5879 2.4585 1.2243 25 1 1.2248 -2.6763 0.8612 26 1 3.9617 -0.9719 5.0381 27 1 5.6260 -3.0527 5.5601 28 1 4.6371 -2.4410 6.9078 29 1 4.7502 -5.3384 5.9539 30 1 5.5370 -4.6952 7.4155 31 1 3.3479 -6.9310 7.3604 32 1 4.2709 -6.3187 8.7539 33 1 2.1608 -5.5812 9.8274 34 1 1.2379 -6.1933 8.4340 35 1 1.3625 -7.8027 10.1941 36 1 2.2572 -5.3836 5.7947 37 1 1.2681 -4.7730 7.1424 38 1 2.1439 -2.4863 6.7488 39 1 1.3571 -3.1297 5.2872 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13461144_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:41 Heat of formation + Delta-G solvation = -50.394803 kcal Electronic energy + Delta-G solvation = -20328.753639 eV Core-core repulsion = 17170.790782 eV Total energy + Delta-G solvation = -3157.962856 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.93780 -40.04902 -38.18045 -37.75502 -36.27173 -33.13101 -31.87476 -31.16664 -28.67344 -26.45019 -24.91938 -24.17185 -23.42241 -22.03806 -21.05947 -20.62369 -19.60541 -18.35091 -18.19666 -17.16036 -16.63324 -16.50994 -16.25607 -15.86048 -15.71273 -15.36415 -15.22475 -15.06295 -14.87512 -14.62344 -13.91287 -13.68972 -13.56982 -13.22711 -13.01113 -12.85345 -12.36796 -12.27873 -12.21249 -12.06245 -12.00505 -11.71531 -11.52995 -11.25616 -11.04553 -10.87009 -10.75141 -10.21027 -10.16763 -8.71432 -5.03741 0.00373 0.06647 0.72138 1.26571 1.56305 1.91506 2.06667 2.13801 3.15204 3.36336 3.54987 3.62340 3.66585 3.86157 3.93390 4.00153 4.09212 4.20005 4.26443 4.36189 4.41807 4.46288 4.48900 4.54096 4.55527 4.70358 4.77240 4.85218 4.92535 4.94973 5.06404 5.08692 5.12667 5.15309 5.22149 5.31878 5.43748 5.87712 6.07944 6.37148 6.66652 7.04613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.017 4.017 3 Si 0.653 3.347 4 C -0.306 4.306 5 C 0.121 3.879 6 N -0.550 5.550 7 C 0.329 3.671 8 N -0.690 5.690 9 C 0.160 3.840 10 H 0.091 0.909 11 C -0.127 4.127 12 C -0.108 4.108 13 C -0.086 4.086 14 H 0.073 0.927 15 C -0.116 4.116 16 C 0.073 3.927 17 O -0.577 6.577 18 C -0.114 4.114 19 C -0.128 4.128 20 S 0.082 5.918 21 H 0.376 0.624 22 H 0.125 0.875 23 H -0.238 1.238 24 H -0.244 1.244 25 H 0.175 0.825 26 H 0.413 0.587 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.381 0.619 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 1.864 2.481 3.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.333 6.333 2 C -0.130 4.130 3 Si 0.553 3.447 4 C -0.429 4.429 5 C -0.031 4.031 6 N -0.276 5.276 7 C -0.042 4.042 8 N -0.328 5.328 9 C 0.054 3.946 10 H 0.109 0.891 11 C -0.165 4.165 12 C -0.147 4.147 13 C -0.105 4.105 14 H 0.091 0.909 15 C -0.154 4.154 16 C -0.005 4.005 17 O -0.382 6.382 18 C -0.152 4.152 19 C -0.167 4.167 20 S 0.332 5.668 21 H 0.224 0.776 22 H 0.143 0.857 23 H -0.162 1.162 24 H -0.168 1.168 25 H 0.192 0.808 26 H 0.250 0.750 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.955 2.648 2.065 4.473 hybrid contribution -1.868 -0.365 0.564 1.985 sum 1.087 2.282 2.629 3.647 Atomic orbital electron populations 1.86615 1.17572 1.79921 1.49181 1.24063 0.83424 1.09826 0.95714 0.95160 0.91846 0.75226 0.82503 1.25486 1.15230 0.98302 1.03883 1.21339 0.96548 0.93133 0.92037 1.66491 1.18869 1.33516 1.08676 1.23739 0.95354 0.93094 0.91977 1.44213 1.59063 1.12409 1.17165 1.21079 0.94872 0.83288 0.95379 0.89052 1.21823 0.97665 0.98376 0.98677 1.21501 0.97379 0.96104 0.99676 1.21150 0.95240 0.96529 0.97578 0.90861 1.21559 0.97788 0.96955 0.99090 1.22273 0.98379 0.84159 0.95692 1.86475 1.51001 1.33357 1.67413 1.21628 0.98001 0.96822 0.98756 1.21939 0.98037 0.97304 0.99471 1.84033 1.55659 1.11529 1.15609 0.77613 0.85734 1.16151 1.16767 0.80789 0.75036 0.90983 0.91273 0.91267 0.91057 0.91014 0.91082 0.93793 0.93420 0.77237 0.91351 0.91510 0.91942 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.70 12.88 -35.23 -0.45 -1.16 16 2 C -0.02 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.65 -0.31 31.07 -169.99 -5.28 -5.59 16 4 C -0.31 -0.26 5.73 -36.02 -0.21 -0.47 16 5 C 0.12 0.24 11.24 -19.15 -0.22 0.02 16 6 N -0.55 -1.60 9.90 -15.21 -0.15 -1.75 16 7 C 0.33 0.41 8.06 -87.68 -0.71 -0.29 16 8 N -0.69 0.57 5.23 -55.78 -0.29 0.27 16 9 C 0.16 -0.15 2.58 -67.93 -0.18 -0.32 16 10 H 0.09 0.09 7.77 -51.93 -0.40 -0.31 16 11 C -0.13 0.31 5.39 -26.73 -0.14 0.16 16 12 C -0.11 0.23 5.20 -26.73 -0.14 0.09 16 13 C -0.09 0.15 2.19 -90.62 -0.20 -0.04 16 14 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 15 C -0.12 0.06 5.05 -26.73 -0.14 -0.07 16 16 C 0.07 -0.03 6.80 37.16 0.25 0.22 16 17 O -0.58 -0.71 13.66 -35.23 -0.48 -1.19 16 18 C -0.11 0.14 4.96 -26.73 -0.13 0.01 16 19 C -0.13 0.09 5.51 -26.73 -0.15 -0.06 16 20 S 0.08 0.01 20.59 -107.50 -2.21 -2.20 16 21 H 0.38 -0.47 8.70 45.56 0.40 -0.07 16 22 H 0.13 -0.11 7.96 -51.93 -0.41 -0.53 16 23 H -0.24 -0.53 7.11 56.52 0.40 -0.12 16 24 H -0.24 -0.34 7.11 56.52 0.40 0.06 16 25 H 0.18 0.15 8.06 -52.48 -0.42 -0.27 16 26 H 0.41 -1.19 8.73 -40.82 -0.36 -1.54 16 27 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 28 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 29 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 30 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 31 H 0.07 0.02 8.14 -51.92 -0.42 -0.40 16 32 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 34 H 0.05 -0.05 6.57 -51.93 -0.34 -0.39 16 35 H 0.38 -1.14 9.12 45.56 0.42 -0.72 16 36 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.07 -0.09 6.56 -51.93 -0.34 -0.43 16 38 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 LS Contribution 326.26 15.07 4.92 4.92 Total: 0.00 -6.03 326.26 -11.11 -17.14 By element: Atomic # 1 Polarization: -4.48 SS G_CDS: -5.31 Total: -9.80 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.84 Total: -0.65 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -0.44 Total: -1.47 kcal Atomic # 8 Polarization: -1.41 SS G_CDS: -0.94 Total: -2.34 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -5.28 Total: -5.59 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.21 Total: -2.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -6.03 -11.11 -17.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13461144_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.255 kcal (2) G-P(sol) polarization free energy of solvation -6.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds