Wall clock time and date at job start Mon Mar 8 2021 07:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.47052 * 2 1 4 4 C 1.50700 * 109.47224 * 120.00103 * 2 1 3 5 5 C 1.33323 * 125.95232 * 64.71616 * 4 2 1 6 6 N 1.32115 * 114.58156 * 180.26731 * 5 4 2 7 7 C 1.29684 * 116.86689 * 359.97438 * 6 5 4 8 8 N 1.38608 * 124.95073 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00285 * 0.02562 * 8 7 6 10 10 H 1.09005 * 109.46946 * 34.99559 * 9 8 7 11 11 C 1.53002 * 109.47336 * 154.99408 * 9 8 7 12 12 C 1.53009 * 109.46946 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47085 * 300.00474 * 12 11 9 14 14 H 1.09005 * 109.46859 * 299.99969 * 13 12 11 15 15 C 1.52998 * 109.47057 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47339 * 174.99711 * 15 13 12 17 17 O 1.42904 * 109.47382 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47615 * 59.99936 * 13 12 11 19 19 C 1.52999 * 109.46913 * 300.00136 * 18 13 12 20 20 S 1.70962 * 110.10214 * 0.02562 * 7 6 5 21 21 H 0.96697 * 114.00078 * 299.99943 * 1 2 3 22 22 H 1.08999 * 109.47263 * 240.00372 * 2 1 3 23 23 H 1.48496 * 110.00087 * 300.00208 * 3 2 1 24 24 H 1.48505 * 109.99878 * 61.32240 * 3 2 1 25 25 H 1.08005 * 122.70971 * 0.23936 * 5 4 2 26 26 H 0.97003 * 120.00312 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47121 * 299.99716 * 11 9 8 28 28 H 1.08994 * 109.46951 * 60.00692 * 11 9 8 29 29 H 1.09002 * 109.46741 * 60.00171 * 12 11 9 30 30 H 1.09000 * 109.46812 * 180.02562 * 12 11 9 31 31 H 1.09009 * 109.47071 * 294.99510 * 15 13 12 32 32 H 1.09001 * 109.47176 * 54.99462 * 15 13 12 33 33 H 1.08998 * 109.47280 * 299.99674 * 16 15 13 34 34 H 1.09001 * 109.47190 * 59.99759 * 16 15 13 35 35 H 0.96700 * 113.99925 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.46670 * 60.00035 * 18 13 12 37 37 H 1.09001 * 109.47266 * 179.97438 * 18 13 12 38 38 H 1.09005 * 109.47274 * 299.99791 * 19 18 13 39 39 H 1.09000 * 109.46779 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7577 -2.0014 1.5147 6 7 2.2895 -2.3882 2.6605 7 6 2.9047 -1.4831 3.3563 8 7 3.5206 -1.7034 4.5783 9 6 3.5064 -3.0412 5.1752 10 1 3.5701 -3.7914 4.3869 11 6 4.7008 -3.1911 6.1195 12 6 4.6863 -4.5886 6.7424 13 6 3.3877 -4.7835 7.5275 14 1 3.3238 -4.0336 8.3160 15 6 3.3735 -6.1807 8.1508 16 6 2.1354 -6.3313 9.0370 17 8 2.1217 -7.6365 9.6187 18 6 2.1933 -4.6337 6.5831 19 6 2.2078 -3.2363 5.9603 20 16 2.8440 0.0218 2.5474 21 1 -0.3933 0.4417 0.7650 22 1 1.7923 -0.5138 -0.8900 23 1 1.5614 2.4679 -1.2084 24 1 1.5879 2.4585 1.2243 25 1 1.2248 -2.6763 0.8612 26 1 3.9617 -0.9719 5.0381 27 1 5.6260 -3.0527 5.5601 28 1 4.6371 -2.4410 6.9078 29 1 4.7502 -5.3384 5.9539 30 1 5.5370 -4.6952 7.4155 31 1 3.3479 -6.9310 7.3604 32 1 4.2709 -6.3187 8.7539 33 1 2.1608 -5.5812 9.8274 34 1 1.2379 -6.1933 8.4340 35 1 1.3625 -7.8027 10.1941 36 1 2.2572 -5.3836 5.7947 37 1 1.2681 -4.7730 7.1424 38 1 2.1439 -2.4863 6.7488 39 1 1.3571 -3.1297 5.2872 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13461144_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:41 Heat of formation + Delta-G solvation = -49.179623 kcal Electronic energy + Delta-G solvation = -20328.700944 eV Core-core repulsion = 17170.790782 eV Total energy + Delta-G solvation = -3157.910162 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95790 -40.02389 -38.19971 -37.77625 -36.25711 -33.10259 -31.78221 -31.21155 -28.63521 -26.48861 -24.90981 -24.14812 -23.35996 -21.98954 -20.98022 -20.66230 -19.60886 -18.34526 -18.24651 -17.15214 -16.63596 -16.48734 -16.27234 -15.90181 -15.67924 -15.36635 -15.19226 -14.98656 -14.90916 -14.60805 -13.97917 -13.65057 -13.50429 -13.14453 -12.96354 -12.89936 -12.48023 -12.23565 -12.11649 -12.06089 -11.97592 -11.64209 -11.46676 -11.20426 -11.01920 -10.90018 -10.70771 -10.28011 -10.21582 -8.73177 -5.02706 -0.05703 0.03046 0.66869 1.25625 1.54183 1.88095 1.97449 2.18635 3.26766 3.38841 3.61392 3.66107 3.73575 3.91984 3.94329 4.05472 4.19003 4.27378 4.35818 4.42008 4.52393 4.55324 4.56754 4.58409 4.61216 4.71080 4.79411 4.90353 4.99698 5.07917 5.10129 5.16602 5.18921 5.22777 5.24373 5.39993 5.52760 5.86554 6.17999 6.43212 6.85527 7.02618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.023 4.023 3 Si 0.724 3.276 4 C -0.306 4.306 5 C 0.105 3.895 6 N -0.578 5.578 7 C 0.318 3.682 8 N -0.682 5.682 9 C 0.164 3.836 10 H 0.069 0.931 11 C -0.119 4.119 12 C -0.108 4.108 13 C -0.077 4.077 14 H 0.083 0.917 15 C -0.115 4.115 16 C 0.069 3.931 17 O -0.601 6.601 18 C -0.110 4.110 19 C -0.121 4.121 20 S 0.109 5.891 21 H 0.385 0.615 22 H 0.135 0.865 23 H -0.275 1.275 24 H -0.265 1.265 25 H 0.177 0.823 26 H 0.423 0.577 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.396 0.604 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 2.634 3.239 5.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.136 4.136 3 Si 0.626 3.374 4 C -0.429 4.429 5 C -0.046 4.046 6 N -0.304 5.304 7 C -0.053 4.053 8 N -0.322 5.322 9 C 0.057 3.943 10 H 0.087 0.913 11 C -0.157 4.157 12 C -0.146 4.146 13 C -0.096 4.096 14 H 0.101 0.899 15 C -0.153 4.153 16 C -0.008 4.008 17 O -0.410 6.410 18 C -0.148 4.148 19 C -0.160 4.160 20 S 0.359 5.641 21 H 0.235 0.765 22 H 0.152 0.848 23 H -0.201 1.201 24 H -0.191 1.191 25 H 0.194 0.806 26 H 0.263 0.737 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.246 0.754 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.575 3.411 2.850 5.704 hybrid contribution -2.102 -0.606 0.327 2.212 sum 1.473 2.805 3.177 4.487 Atomic orbital electron populations 1.86588 1.18287 1.80290 1.49949 1.24277 0.82953 1.10476 0.95853 0.94343 0.90736 0.73135 0.79174 1.25599 1.14988 0.98106 1.04245 1.21454 0.97169 0.93794 0.92208 1.66486 1.19906 1.34679 1.09378 1.23956 0.95312 0.93510 0.92500 1.44256 1.58512 1.12840 1.16567 1.21008 0.95542 0.82763 0.94962 0.91252 1.21763 0.96871 0.98467 0.98594 1.21501 0.97448 0.96137 0.99540 1.21073 0.95004 0.96006 0.97501 0.89914 1.21550 0.97738 0.97313 0.98693 1.22369 0.98528 0.83868 0.96067 1.86429 1.52301 1.34242 1.68030 1.21583 0.98519 0.96190 0.98554 1.21851 0.97237 0.97779 0.99161 1.83867 1.55101 1.10342 1.14811 0.76537 0.84789 1.20110 1.19090 0.80606 0.73734 0.90617 0.89845 0.92112 0.90316 0.92290 0.91504 0.92702 0.92901 0.75438 0.92520 0.91292 0.91080 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.59 12.88 -148.98 -1.92 -3.51 16 2 C -0.02 0.00 2.99 71.24 0.21 0.21 16 3 Si 0.72 -0.76 31.07 68.60 2.13 1.37 16 4 C -0.31 -0.59 5.73 24.57 0.14 -0.44 16 5 C 0.10 0.51 11.24 83.54 0.94 1.45 16 6 N -0.58 -3.96 9.90 -202.03 -2.00 -5.97 16 7 C 0.32 0.90 8.06 179.32 1.45 2.34 16 8 N -0.68 1.20 5.23 -330.40 -1.73 -0.53 16 9 C 0.16 -0.26 2.58 44.99 0.12 -0.14 16 10 H 0.07 0.23 7.77 -2.38 -0.02 0.21 16 11 C -0.12 0.66 5.39 30.60 0.16 0.83 16 12 C -0.11 0.48 5.20 30.60 0.16 0.64 16 13 C -0.08 0.29 2.19 -10.79 -0.02 0.27 16 14 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 15 C -0.12 0.09 5.05 30.59 0.15 0.24 16 16 C 0.07 -0.06 6.80 71.98 0.49 0.43 16 17 O -0.60 -1.57 13.66 -148.98 -2.04 -3.61 16 18 C -0.11 0.21 4.96 30.59 0.15 0.37 16 19 C -0.12 0.12 5.51 30.59 0.17 0.29 16 20 S 0.11 0.00 20.59 -56.49 -1.16 -1.16 16 21 H 0.39 -0.84 8.70 -74.06 -0.64 -1.49 16 22 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 23 H -0.28 -1.41 7.11 99.48 0.71 -0.71 16 24 H -0.27 -0.67 7.11 99.48 0.71 0.04 16 25 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 26 H 0.42 -2.81 8.73 -92.71 -0.81 -3.62 16 27 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 32 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.05 -0.12 6.57 -2.39 -0.02 -0.13 16 35 H 0.40 -2.34 9.12 -74.06 -0.68 -3.02 16 36 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.07 -0.16 6.56 -2.39 -0.02 -0.18 16 38 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 39 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 Total: 0.00 -14.30 326.26 -3.62 -17.92 By element: Atomic # 1 Polarization: -9.97 SS G_CDS: -1.02 Total: -11.00 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 4.12 Total: 6.48 kcal Atomic # 7 Polarization: -2.76 SS G_CDS: -3.73 Total: -6.49 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -3.95 Total: -7.12 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.13 Total: 1.37 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.16 Total: -1.16 kcal Total: -14.30 -3.62 -17.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13461144_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.263 kcal (2) G-P(sol) polarization free energy of solvation -14.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds