Wall clock time and date at job start Mon Mar 8 2021 07:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33323 * 125.95232 * 2 1 4 4 C 1.50703 * 122.70916 * 0.22548 * 3 2 1 5 5 O 1.42901 * 109.47106 * 29.99891 * 4 3 2 6 6 Si 1.86295 * 109.47206 * 150.00183 * 4 3 2 7 7 N 1.32115 * 114.58155 * 180.26254 * 3 2 1 8 8 C 1.29684 * 116.86695 * 0.02562 * 7 3 2 9 9 N 1.38608 * 124.95078 * 179.97438 * 8 7 3 10 10 C 1.46506 * 120.00235 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46837 * 35.00794 * 10 9 8 12 12 C 1.52999 * 109.47033 * 155.00077 * 10 9 8 13 13 C 1.52999 * 109.46899 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47373 * 300.00361 * 13 12 10 15 15 H 1.09008 * 109.47029 * 300.00079 * 14 13 12 16 16 C 1.52999 * 109.47373 * 180.02562 * 14 13 12 17 17 C 1.52993 * 109.47262 * 174.99762 * 16 14 13 18 18 O 1.42904 * 109.47157 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47084 * 60.00077 * 14 13 12 20 20 C 1.52998 * 109.47435 * 275.00559 * 10 9 8 21 21 S 1.70962 * 110.10209 * 0.02562 * 8 7 3 22 22 H 1.09000 * 109.47239 * 179.72129 * 1 2 3 23 23 H 1.09004 * 109.47256 * 299.71481 * 1 2 3 24 24 H 1.08994 * 109.47160 * 59.71554 * 1 2 3 25 25 H 1.08997 * 109.47286 * 270.00130 * 4 3 2 26 26 H 0.96707 * 113.99828 * 60.00566 * 5 4 3 27 27 H 1.48503 * 110.00155 * 58.68001 * 6 4 3 28 28 H 1.48502 * 110.00092 * 180.02562 * 6 4 3 29 29 H 0.97000 * 120.00130 * 0.03258 * 9 8 7 30 30 H 1.09001 * 109.47443 * 300.00337 * 12 10 9 31 31 H 1.09008 * 109.46920 * 60.00435 * 12 10 9 32 32 H 1.09000 * 109.47033 * 60.00679 * 13 12 10 33 33 H 1.09003 * 109.47255 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.47286 * 295.00458 * 16 14 13 35 35 H 1.09008 * 109.47002 * 55.00112 * 16 14 13 36 36 H 1.09001 * 109.47703 * 300.00012 * 17 16 14 37 37 H 1.09001 * 109.47117 * 60.00539 * 17 16 14 38 38 H 0.96695 * 114.00020 * 179.97438 * 18 17 16 39 39 H 1.08994 * 109.47316 * 60.00207 * 19 14 13 40 40 H 1.09001 * 109.47124 * 180.02562 * 19 14 13 41 41 H 1.09003 * 109.46604 * 299.99738 * 20 10 9 42 42 H 1.09003 * 109.46872 * 59.99635 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0050 5 8 0.4834 2.5005 0.6827 6 14 2.9350 3.6129 0.8820 7 7 3.5850 0.8188 -0.0055 8 6 3.9314 -0.4309 -0.0107 9 7 5.2384 -0.8925 -0.0174 10 6 5.5065 -2.3328 -0.0233 11 1 4.7432 -2.8420 -0.6117 12 6 6.8828 -2.5928 -0.6392 13 6 7.1625 -4.0970 -0.6460 14 6 7.1376 -4.6269 0.7890 15 1 7.9010 -4.1180 1.3776 16 6 7.4180 -6.1310 0.7822 17 6 7.5167 -6.6379 2.2224 18 8 7.7780 -8.0428 2.2160 19 6 5.7613 -4.3670 1.4048 20 6 5.4818 -2.8623 1.4119 21 16 2.5413 -1.4261 -0.0095 22 1 -0.3634 -1.0276 -0.0050 23 1 -0.3634 0.5094 0.8926 24 1 -0.3633 0.5182 -0.8874 25 1 1.6059 2.8238 -1.0214 26 1 0.5286 2.2086 1.6035 27 1 4.2567 3.5791 0.2056 28 1 2.4055 5.0002 0.8942 29 1 5.9755 -0.2620 -0.0180 30 1 6.9004 -2.2156 -1.6618 31 1 7.6462 -2.0835 -0.0509 32 1 6.3992 -4.6058 -1.2346 33 1 8.1432 -4.2822 -1.0844 34 1 6.6078 -6.6493 0.2693 35 1 8.3577 -6.3231 0.2643 36 1 8.3268 -6.1196 2.7354 37 1 6.5770 -6.4458 2.7404 38 1 7.8536 -8.4327 3.0976 39 1 4.9980 -4.8758 0.8163 40 1 5.7437 -4.7441 2.4273 41 1 6.2452 -2.3530 2.0002 42 1 4.5013 -2.6770 1.8506 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13461144_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:11:44 Heat of formation + Delta-G solvation = -53.510487 kcal Electronic energy + Delta-G solvation = -22374.288734 eV Core-core repulsion = 19060.653153 eV Total energy + Delta-G solvation = -3313.635582 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07018 -40.42219 -38.22734 -37.63635 -36.31624 -33.47694 -32.17999 -31.97780 -29.50099 -28.15995 -25.56470 -24.63888 -24.42225 -23.31200 -22.08844 -21.23697 -20.34634 -19.08127 -18.39323 -17.84725 -17.32512 -16.77792 -16.61355 -16.39308 -15.76372 -15.54889 -15.36052 -15.29212 -15.14372 -14.76009 -14.13670 -14.01015 -13.87829 -13.74499 -13.54001 -13.39800 -13.32383 -13.10937 -12.65374 -12.40225 -12.32115 -12.18006 -12.16651 -11.82049 -11.77530 -11.52235 -11.36596 -10.99357 -10.78897 -10.52606 -10.29560 -9.92797 -8.57764 -4.82764 0.07942 0.22930 0.83656 1.41948 1.86474 1.93598 1.98300 2.28220 3.09355 3.36865 3.41599 3.50400 3.58189 3.75846 3.81047 3.95163 4.11436 4.12158 4.18520 4.22438 4.29241 4.36729 4.37725 4.39580 4.43771 4.57877 4.61234 4.70953 4.81990 4.84043 4.87292 4.92663 4.95242 4.99782 5.03003 5.03264 5.13476 5.21025 5.32353 5.34667 5.64120 6.29826 6.52698 6.62751 7.01472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.241 4.241 3 C 0.066 3.934 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.546 5.546 8 C 0.321 3.679 9 N -0.692 5.692 10 C 0.152 3.848 11 H 0.082 0.918 12 C -0.124 4.124 13 C -0.110 4.110 14 C -0.087 4.087 15 H 0.075 0.925 16 C -0.117 4.117 17 C 0.073 3.927 18 O -0.577 6.577 19 C -0.115 4.115 20 C -0.136 4.136 21 S 0.099 5.901 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.378 0.622 27 H -0.252 1.252 28 H -0.262 1.262 29 H 0.411 0.589 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.381 0.619 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 -3.039 3.465 4.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.364 4.364 3 C -0.064 4.064 4 C -0.146 4.146 5 O -0.340 6.340 6 Si 0.617 3.383 7 N -0.273 5.273 8 C -0.050 4.050 9 N -0.332 5.332 10 C 0.047 3.953 11 H 0.099 0.901 12 C -0.162 4.162 13 C -0.148 4.148 14 C -0.106 4.106 15 H 0.093 0.907 16 C -0.154 4.154 17 C -0.005 4.005 18 O -0.382 6.382 19 C -0.153 4.153 20 C -0.175 4.175 21 S 0.348 5.652 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.136 0.864 26 H 0.226 0.774 27 H -0.177 1.177 28 H -0.188 1.188 29 H 0.249 0.751 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.228 0.772 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.770 -2.895 2.152 4.018 hybrid contribution -0.036 0.642 0.018 0.643 sum 1.734 -2.253 2.170 3.576 Atomic orbital electron populations 1.20141 0.86404 1.01595 1.03688 1.25142 1.01286 0.92780 1.17161 1.20103 0.86799 0.97140 1.02404 1.24517 0.92422 0.95569 1.02112 1.86524 1.29027 1.89486 1.28990 0.94092 0.77601 0.76448 0.90181 1.65975 1.17242 1.16665 1.27396 1.23282 0.91860 0.91439 0.98465 1.44099 1.01751 1.07052 1.80251 1.21196 0.98504 0.78639 0.96979 0.90053 1.21773 0.95284 0.97529 1.01651 1.21522 1.02749 0.94048 0.96462 1.21155 0.97702 0.94949 0.96756 0.90656 1.21556 1.03168 0.94682 0.96002 1.22269 0.99146 0.81492 0.97602 1.86474 1.95110 1.22494 1.34167 1.21658 0.96922 0.95117 1.01640 1.22076 1.02874 0.96299 0.96291 1.83989 0.96560 1.10577 1.74115 0.92410 0.89889 0.90776 0.86353 0.77394 1.17651 1.18788 0.75075 0.90769 0.90801 0.91260 0.90830 0.91003 0.91021 0.93743 0.93409 0.77186 0.91331 0.91093 0.90986 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.01 8.91 36.01 0.32 0.31 16 2 C -0.24 -0.43 6.50 -36.02 -0.23 -0.66 16 3 C 0.07 0.17 5.92 -84.19 -0.50 -0.33 16 4 C -0.03 -0.05 2.94 36.01 0.11 0.06 16 5 O -0.54 -0.17 10.18 -35.23 -0.36 -0.53 16 6 Si 0.72 0.92 32.08 -169.99 -5.45 -4.54 16 7 N -0.55 -1.90 8.95 -11.37 -0.10 -2.00 16 8 C 0.32 0.62 8.22 -87.68 -0.72 -0.10 16 9 N -0.69 0.20 5.23 -55.78 -0.29 -0.09 16 10 C 0.15 -0.29 2.40 -67.93 -0.16 -0.46 16 11 H 0.08 -0.11 7.26 -51.93 -0.38 -0.49 16 12 C -0.12 0.36 5.39 -26.73 -0.14 0.21 16 13 C -0.11 0.32 5.20 -26.73 -0.14 0.18 16 14 C -0.09 0.24 2.19 -90.62 -0.20 0.05 16 15 H 0.08 -0.21 8.14 -51.92 -0.42 -0.63 16 16 C -0.12 0.17 5.05 -26.74 -0.14 0.03 16 17 C 0.07 -0.09 6.80 37.15 0.25 0.16 16 18 O -0.58 -0.30 13.66 -35.23 -0.48 -0.78 16 19 C -0.12 0.32 4.96 -26.71 -0.13 0.19 16 20 C -0.14 0.31 5.51 -26.71 -0.15 0.16 16 21 S 0.10 0.10 21.69 -107.50 -2.33 -2.23 16 22 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 23 H 0.08 -0.09 6.41 -51.93 -0.33 -0.42 16 24 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.12 0.23 7.96 -51.93 -0.41 -0.18 16 26 H 0.38 -1.21 8.14 45.56 0.37 -0.83 16 27 H -0.25 -1.20 7.11 56.52 0.40 -0.80 16 28 H -0.26 -0.96 7.11 56.52 0.40 -0.56 16 29 H 0.41 -0.34 8.73 -40.82 -0.36 -0.70 16 30 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 31 H 0.07 -0.23 8.14 -51.92 -0.42 -0.66 16 32 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 33 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 34 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.07 -0.05 8.14 -51.92 -0.42 -0.47 16 36 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 37 H 0.05 -0.10 6.57 -51.93 -0.34 -0.45 16 38 H 0.38 -1.39 9.12 45.56 0.42 -0.98 16 39 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 40 H 0.07 -0.21 6.57 -51.93 -0.34 -0.55 16 41 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 42 H 0.07 -0.09 8.04 -51.93 -0.42 -0.51 16 LS Contribution 342.48 15.07 5.16 5.16 Total: 0.00 -6.49 342.48 -11.75 -18.24 By element: Atomic # 1 Polarization: -6.98 SS G_CDS: -6.06 Total: -13.04 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.83 Total: -0.20 kcal Atomic # 7 Polarization: -1.69 SS G_CDS: -0.39 Total: -2.09 kcal Atomic # 8 Polarization: -0.46 SS G_CDS: -0.84 Total: -1.30 kcal Atomic # 14 Polarization: 0.92 SS G_CDS: -5.45 Total: -4.54 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.33 Total: -2.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -6.49 -11.75 -18.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13461144_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.271 kcal (2) G-P(sol) polarization free energy of solvation -6.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds