Wall clock time and date at job start Mon Mar 8 2021 07:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33343 * 125.94686 * 2 1 4 4 C 1.50695 * 122.70290 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.47254 * 329.99520 * 4 3 2 6 6 Si 1.86304 * 109.47013 * 209.99888 * 4 3 2 7 7 H 1.48501 * 109.47130 * 59.99896 * 6 4 3 8 8 H 1.48500 * 109.47074 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46941 * 299.99753 * 6 4 3 10 10 N 1.32090 * 114.58957 * 179.97438 * 3 2 1 11 11 C 1.29760 * 116.85499 * 359.97438 * 10 3 2 12 12 S 1.76206 * 124.95423 * 179.97438 * 11 10 3 13 13 C 1.81000 * 99.99929 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46638 * 179.97438 * 13 12 11 15 15 Si 1.86300 * 109.46700 * 179.97438 * 14 13 12 16 16 C 1.86299 * 109.47217 * 60.00408 * 15 14 13 17 17 C 1.86303 * 109.47161 * 179.97438 * 15 14 13 18 18 C 1.86296 * 109.47655 * 300.00316 * 15 14 13 19 19 S 1.70967 * 110.09506 * 0.24553 * 11 10 3 20 20 H 1.08998 * 109.47076 * 90.00247 * 1 2 3 21 21 H 1.09004 * 109.46856 * 209.99540 * 1 2 3 22 22 H 1.08997 * 109.47721 * 330.00111 * 1 2 3 23 23 H 1.08999 * 109.47539 * 89.99436 * 4 3 2 24 24 H 0.96693 * 113.99936 * 300.00614 * 5 4 3 25 25 H 1.09000 * 109.47216 * 300.00172 * 13 12 11 26 26 H 1.09001 * 109.46620 * 60.00275 * 13 12 11 27 27 H 1.09000 * 109.47486 * 300.00041 * 14 13 12 28 28 H 1.09001 * 109.47362 * 60.00764 * 14 13 12 29 29 H 1.09000 * 109.47172 * 59.99811 * 16 15 14 30 30 H 1.09002 * 109.47329 * 179.97438 * 16 15 14 31 31 H 1.09001 * 109.47058 * 299.99968 * 16 15 14 32 32 H 1.09004 * 109.46801 * 60.00242 * 17 15 14 33 33 H 1.09002 * 109.47702 * 180.02562 * 17 15 14 34 34 H 1.09000 * 109.47332 * 300.00252 * 17 15 14 35 35 H 1.09001 * 109.47296 * 59.99624 * 18 15 14 36 36 H 1.08992 * 109.47275 * 180.02562 * 18 15 14 37 37 H 1.09004 * 109.46880 * 300.00109 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0795 0.0000 4 6 1.7411 2.4830 -0.0006 5 8 0.4812 2.5018 -0.6748 6 14 2.9321 3.6150 -0.8787 7 1 3.1129 3.1536 -2.2785 8 1 2.3918 4.9982 -0.8787 9 1 4.2413 3.5956 -0.1780 10 7 3.5847 0.8194 0.0005 11 6 3.9314 -0.4310 0.0015 12 16 5.5929 -1.0180 0.0017 13 6 5.2955 -2.8034 0.0024 14 6 6.6346 -3.5433 0.0021 15 14 6.3285 -5.3810 0.0036 16 6 5.3593 -5.8504 -1.5166 17 6 7.9591 -6.2822 0.0024 18 6 5.3612 -5.8483 1.5256 19 16 2.5412 -1.4261 -0.0051 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6083 2.8217 1.0269 24 1 0.5238 2.2117 -1.5962 25 1 4.7289 -3.0770 0.8925 26 1 4.7290 -3.0776 -0.8875 27 1 7.2008 -3.2696 -0.8882 28 1 7.2015 -3.2692 0.8918 29 1 5.9253 -5.5771 -2.4071 30 1 5.1806 -6.9257 -1.5160 31 1 4.4053 -5.3232 -1.5164 32 1 8.5266 -6.0076 0.8916 33 1 7.7801 -7.3574 0.0028 34 1 8.5247 -6.0088 -0.8884 35 1 4.4071 -5.3211 1.5259 36 1 5.1825 -6.9235 1.5266 37 1 5.9283 -5.5737 2.4151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13466070_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:29:49 Heat of formation + Delta-G solvation = -47.795526 kcal Electronic energy + Delta-G solvation = -16739.102362 eV Core-core repulsion = 14085.381084 eV Total energy + Delta-G solvation = -2653.721278 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 291.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06576 -37.71660 -34.03354 -33.41281 -29.90625 -29.60511 -28.55306 -28.55127 -26.30220 -25.67264 -24.02075 -20.55382 -19.45656 -18.17747 -17.66020 -16.75898 -16.23799 -16.13885 -15.85378 -15.15723 -14.79361 -14.40229 -14.34103 -14.14117 -14.11717 -13.97058 -13.85330 -13.64454 -13.48998 -13.36405 -13.33126 -13.21557 -12.85176 -12.67152 -12.37695 -12.08612 -11.91880 -11.78624 -10.98566 -10.94908 -10.86106 -10.74817 -10.52822 -10.38895 -10.04163 -8.56040 -0.45725 -0.01704 0.05083 0.57585 1.16102 1.25761 1.62265 1.66339 1.68200 1.71918 1.72998 1.75296 2.16466 2.46977 3.20530 3.40485 3.69514 3.71300 3.94023 4.17411 4.28714 4.49001 4.57808 4.59894 4.60654 4.62249 4.64074 4.64961 4.65011 4.65317 4.75084 4.95395 5.02363 5.17344 5.35704 5.43476 5.43937 6.32132 6.58512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.193 4.193 3 C 0.031 3.969 4 C -0.046 4.046 5 O -0.534 6.534 6 Si 0.975 3.025 7 H -0.258 1.258 8 H -0.257 1.257 9 H -0.242 1.242 10 N -0.451 5.451 11 C 0.017 3.983 12 S 0.009 5.991 13 C -0.118 4.118 14 C -0.403 4.403 15 Si 1.024 2.976 16 C -0.453 4.453 17 C -0.450 4.450 18 C -0.454 4.454 19 S 0.130 5.870 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.099 0.901 23 H 0.127 0.873 24 H 0.377 0.623 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -4.213 -0.511 4.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.318 4.318 3 C -0.103 4.103 4 C -0.159 4.159 5 O -0.338 6.338 6 Si 0.795 3.205 7 H -0.181 1.181 8 H -0.181 1.181 9 H -0.165 1.165 10 N -0.170 5.170 11 C -0.369 4.369 12 S 0.241 5.759 13 C -0.267 4.267 14 C -0.488 4.488 15 Si 1.218 2.782 16 C -0.561 4.561 17 C -0.558 4.558 18 C -0.561 4.561 19 S 0.382 5.618 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.117 0.883 23 H 0.144 0.856 24 H 0.224 0.776 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.128 -3.525 -0.362 3.719 hybrid contribution -1.542 -0.335 -0.209 1.592 sum -0.415 -3.860 -0.571 3.924 Atomic orbital electron populations 1.20380 0.85770 1.03919 1.03333 1.25634 1.02003 0.93433 1.10741 1.20689 0.87237 0.97870 1.04481 1.24483 0.92730 0.94741 1.03903 1.86520 1.28716 1.89611 1.28955 0.85245 0.78256 0.77217 0.79749 1.18144 1.18140 1.16537 1.66236 1.16496 1.16997 1.17307 1.28413 1.04221 0.95585 1.08632 1.86059 0.96322 1.02778 1.90779 1.23593 1.02900 0.93667 1.06518 1.26152 0.97182 1.18860 1.06577 0.79053 0.67435 0.64299 0.67387 1.26180 1.08806 1.05764 1.15340 1.26111 1.16681 1.08372 1.04670 1.26179 1.08795 1.05755 1.15367 1.83989 0.96896 1.11108 1.69821 0.90379 0.91668 0.88273 0.85552 0.77557 0.88560 0.88587 0.89042 0.89036 0.91040 0.90947 0.91271 0.91079 0.90962 0.91085 0.91264 0.90947 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.07 8.95 36.00 0.32 0.39 16 2 C -0.19 -0.26 6.50 -36.02 -0.23 -0.49 16 3 C 0.03 0.08 5.92 -84.19 -0.50 -0.42 16 4 C -0.05 -0.04 2.82 36.00 0.10 0.06 16 5 O -0.53 0.13 9.90 -35.23 -0.35 -0.22 16 6 Si 0.97 1.77 27.37 -169.99 -4.65 -2.88 16 7 H -0.26 -0.71 7.11 56.52 0.40 -0.30 16 8 H -0.26 -0.56 7.11 56.52 0.40 -0.16 16 9 H -0.24 -0.92 7.11 56.52 0.40 -0.52 16 10 N -0.45 -2.00 8.95 -10.94 -0.10 -2.10 16 11 C 0.02 0.05 7.59 51.89 0.39 0.45 16 12 S 0.01 0.01 22.31 -107.50 -2.40 -2.38 16 13 C -0.12 0.20 4.00 37.16 0.15 0.35 16 14 C -0.40 1.20 4.45 37.16 0.17 1.37 16 15 Si 1.02 -4.24 12.19 -169.99 -2.07 -6.31 16 16 C -0.45 1.32 8.65 101.05 0.87 2.19 16 17 C -0.45 1.23 8.65 101.05 0.87 2.10 16 18 C -0.45 1.30 8.65 101.05 0.87 2.18 16 19 S 0.13 0.11 21.54 -107.50 -2.32 -2.21 16 20 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 21 H 0.06 -0.09 8.14 -51.93 -0.42 -0.52 16 22 H 0.10 -0.05 6.62 -51.93 -0.34 -0.39 16 23 H 0.13 -0.01 7.96 -51.93 -0.41 -0.42 16 24 H 0.38 -1.12 8.68 45.56 0.40 -0.73 16 25 H 0.10 -0.24 7.63 -51.92 -0.40 -0.64 16 26 H 0.10 -0.25 7.62 -51.92 -0.40 -0.64 16 27 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 28 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 29 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 30 H 0.07 -0.19 7.96 -51.93 -0.41 -0.61 16 31 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 32 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 35 H 0.07 -0.20 7.79 -51.93 -0.40 -0.60 16 36 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 LS Contribution 331.80 15.07 5.00 5.00 Total: 0.00 -5.45 331.80 -9.19 -14.64 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -5.32 Total: -11.70 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 3.02 Total: 8.17 kcal Atomic # 7 Polarization: -2.00 SS G_CDS: -0.10 Total: -2.10 kcal Atomic # 8 Polarization: 0.13 SS G_CDS: -0.35 Total: -0.22 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: -6.72 Total: -9.19 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -4.71 Total: -4.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -5.45 -9.19 -14.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13466070_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.157 kcal (2) G-P(sol) polarization free energy of solvation -5.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds